Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 Y_RNA.180-201ENST00000363867 113 ntBASIC-0.39□□□□□ -2.47
SDC1P18827 SNORD114-29-201ENST00000364819 70 ntBASIC-0.39□□□□□ -2.47
SDC1P18827 Y_RNA.346-201ENST00000365385 112 ntBASIC-0.39□□□□□ -2.47
SDC1P18827 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.39□□□□□ -2.47
SDC1P18827 SNORD101-201ENST00000384027 73 ntBASIC-0.39□□□□□ -2.47
SDC1P18827 RNU6-154P-201ENST00000384306 106 ntBASIC-0.39□□□□□ -2.47
SDC1P18827 Y_RNA.568-201ENST00000384742 113 ntBASIC-0.39□□□□□ -2.47
SDC1P18827 MIR577-201ENST00000385196 96 ntBASIC-0.39□□□□□ -2.47
SDC1P18827 AL035470.1-201ENST00000622571 220 ntBASIC-0.39□□□□□ -2.47
SDC1P18827 Y_RNA.283-201ENST00000364798 112 ntBASIC-0.4□□□□□ -2.47
SDC1P18827 RNU6-320P-201ENST00000516511 106 ntBASIC-0.4□□□□□ -2.47
SDC1P18827 RNU6-175P-201ENST00000516896 107 ntBASIC-0.4□□□□□ -2.47
SDC1P18827 AC007012.1-201ENST00000567192 175 ntBASIC-0.4□□□□□ -2.47
SDC1P18827 MIR4696-201ENST00000581431 70 ntBASIC-0.4□□□□□ -2.47
SDC1P18827 MIR3666-201ENST00000607845 111 ntBASIC-0.4□□□□□ -2.47
SDC1P18827 AL157777.2-201ENST00000258070 137 ntBASIC-0.41□□□□□ -2.48
SDC1P18827 MIR655-201ENST00000362159 97 ntBASIC-0.41□□□□□ -2.48
SDC1P18827 RNU6-664P-201ENST00000362381 107 ntBASIC-0.41□□□□□ -2.48
SDC1P18827 Y_RNA.343-201ENST00000365354 112 ntBASIC-0.41□□□□□ -2.48
SDC1P18827 MIR539-201ENST00000365690 78 ntBASIC-0.41□□□□□ -2.48
SDC1P18827 RNU6-811P-201ENST00000384069 107 ntBASIC-0.41□□□□□ -2.48
SDC1P18827 RNU7-107P-201ENST00000459121 61 ntBASIC-0.41□□□□□ -2.48
SDC1P18827 RNU6-346P-201ENST00000516288 111 ntBASIC-0.41□□□□□ -2.48
SDC1P18827 RNA5SP285-201ENST00000516619 119 ntBASIC-0.41□□□□□ -2.48
SDC1P18827 RNU6-255P-201ENST00000516957 105 ntBASIC-0.41□□□□□ -2.48
SDC1P18827 AC096720.1-201ENST00000604441 183 ntBASIC-0.41□□□□□ -2.48
SDC1P18827 RNU6-1125P-201ENST00000363601 107 ntBASIC-0.42□□□□□ -2.48
SDC1P18827 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.42□□□□□ -2.48
SDC1P18827 RNU6-480P-201ENST00000384332 107 ntBASIC-0.42□□□□□ -2.48
SDC1P18827 Y_RNA.506-201ENST00000384494 102 ntBASIC-0.42□□□□□ -2.48
SDC1P18827 Y_RNA.525-201ENST00000384570 113 ntBASIC-0.42□□□□□ -2.48
SDC1P18827 RNU6-1211P-201ENST00000459179 105 ntBASIC-0.42□□□□□ -2.48
SDC1P18827 MIR4694-201ENST00000578534 80 ntBASIC-0.42□□□□□ -2.48
SDC1P18827 RNA5SP98-201ENST00000363158 137 ntBASIC-0.43□□□□□ -2.48
SDC1P18827 RNA5SP205-201ENST00000364653 136 ntBASIC-0.43□□□□□ -2.48
SDC1P18827 Y_RNA.309-201ENST00000365046 111 ntBASIC-0.43□□□□□ -2.48
SDC1P18827 RNA5SP300-201ENST00000391197 107 ntBASIC-0.43□□□□□ -2.48
SDC1P18827 RNU6-794P-201ENST00000517261 64 ntBASIC-0.43□□□□□ -2.48
SDC1P18827 MIR4679-2-201ENST00000578358 77 ntBASIC-0.43□□□□□ -2.48
SDC1P18827 Y_RNA.30-201ENST00000362572 97 ntBASIC-0.44□□□□□ -2.48
SDC1P18827 RNA5SP275-201ENST00000363936 118 ntBASIC-0.44□□□□□ -2.48
SDC1P18827 RNY1P5-201ENST00000383890 115 ntBASIC-0.44□□□□□ -2.48
SDC1P18827 Y_RNA.549-201ENST00000384657 102 ntBASIC-0.44□□□□□ -2.48
SDC1P18827 RNU6-971P-201ENST00000516920 106 ntBASIC-0.44□□□□□ -2.48
SDC1P18827 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.44□□□□□ -2.48
SDC1P18827 AC025521.1-201ENST00000621624 286 ntBASIC-0.44□□□□□ -2.48
SDC1P18827 SNORD114-31-201ENST00000363219 75 ntBASIC-0.45□□□□□ -2.48
SDC1P18827 RNU6-832P-201ENST00000363319 107 ntBASIC-0.45□□□□□ -2.48
SDC1P18827 Y_RNA.163-201ENST00000363702 113 ntBASIC-0.45□□□□□ -2.48
SDC1P18827 MIR652-201ENST00000385278 98 ntBASIC-0.45□□□□□ -2.48
SDC1P18827 RNU6-935P-201ENST00000410371 100 ntBASIC-0.45□□□□□ -2.48
SDC1P18827 AC096531.1-201ENST00000419107 107 ntBASIC-0.45□□□□□ -2.48
SDC1P18827 Y_RNA.648-201ENST00000459455 110 ntBASIC-0.45□□□□□ -2.48
SDC1P18827 MIR548O2-201ENST00000616090 70 ntBASIC-0.45□□□□□ -2.48
SDC1P18827 MIR6759-201ENST00000638110 65 ntBASIC-0.45□□□□□ -2.48
SDC1P18827 RNU6-75P-201ENST00000515944 104 ntBASIC-0.46□□□□□ -2.48
SDC1P18827 Y_RNA.659-201ENST00000515994 113 ntBASIC-0.46□□□□□ -2.48
SDC1P18827 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.46□□□□□ -2.48
SDC1P18827 RNY3P2-201ENST00000362918 102 ntBASIC-0.47□□□□□ -2.48
SDC1P18827 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.47□□□□□ -2.48
SDC1P18827 MIR216B-201ENST00000390186 82 ntBASIC-0.47□□□□□ -2.48
SDC1P18827 Y_RNA.586-201ENST00000391146 98 ntBASIC-0.47□□□□□ -2.48
SDC1P18827 Y_RNA.649-201ENST00000459077 103 ntBASIC-0.47□□□□□ -2.48
SDC1P18827 IGLVI-20-201ENST00000519296 130 ntBASIC-0.47□□□□□ -2.48
SDC1P18827 AC068339.1-201ENST00000526965 141 ntBASIC-0.47□□□□□ -2.48
SDC1P18827 MIR3613-201ENST00000579844 87 ntBASIC-0.47□□□□□ -2.48
SDC1P18827 RNU6-86P-201ENST00000606534 107 ntBASIC-0.47□□□□□ -2.48
SDC1P18827 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.47□□□□□ -2.48
SDC1P18827 MIR3914-2-201ENST00000637339 95 ntBASIC-0.47□□□□□ -2.48
SDC1P18827 MIR4788-201ENST00000639104 80 ntBASIC-0.47□□□□□ -2.48
SDC1P18827 MIR20A-201ENST00000362279 71 ntBASIC-0.48□□□□□ -2.49
SDC1P18827 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.48□□□□□ -2.49
SDC1P18827 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.48□□□□□ -2.49
SDC1P18827 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-0.48□□□□□ -2.49
SDC1P18827 MIR4263-201ENST00000584745 83 ntBASIC-0.48□□□□□ -2.49
SDC1P18827 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.49□□□□□ -2.49
SDC1P18827 MIR451A-201ENST00000385059 72 ntBASIC-0.49□□□□□ -2.49
SDC1P18827 SNORD33.1-201ENST00000516213 88 ntBASIC-0.49□□□□□ -2.49
SDC1P18827 Y_RNA.712-201ENST00000517011 92 ntBASIC-0.49□□□□□ -2.49
SDC1P18827 AL590491.3-201ENST00000610731 82 ntBASIC-0.49□□□□□ -2.49
SDC1P18827 SNORD50.2-201ENST00000365465 70 ntBASIC-0.5□□□□□ -2.49
SDC1P18827 AC244090.1-201ENST00000441884 93 ntBASIC-0.5□□□□□ -2.49
SDC1P18827 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.51□□□□□ -2.49
SDC1P18827 SNORD14C-201ENST00000365382 88 ntBASIC-0.51□□□□□ -2.49
SDC1P18827 RNU6-80P-201ENST00000384195 107 ntBASIC-0.51□□□□□ -2.49
SDC1P18827 MIR548A1-201ENST00000385041 97 ntBASIC-0.51□□□□□ -2.49
SDC1P18827 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.51□□□□□ -2.49
SDC1P18827 AL513043.2-201ENST00000573941 143 ntBASIC-0.51□□□□□ -2.49
SDC1P18827 MIR4645-201ENST00000583158 77 ntBASIC-0.51□□□□□ -2.49
SDC1P18827 SNORD114-28-201ENST00000363610 72 ntBASIC-0.52□□□□□ -2.49
SDC1P18827 RNU6-54P-201ENST00000365563 107 ntBASIC-0.52□□□□□ -2.49
SDC1P18827 RNU6-455P-201ENST00000384681 107 ntBASIC-0.52□□□□□ -2.49
SDC1P18827 RNU7-85P-201ENST00000458851 63 ntBASIC-0.52□□□□□ -2.49
SDC1P18827 RNU6-65P-201ENST00000516332 98 ntBASIC-0.52□□□□□ -2.49
SDC1P18827 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.52□□□□□ -2.49
SDC1P18827 MIR5009-201ENST00000578736 100 ntBASIC-0.52□□□□□ -2.49
SDC1P18827 MIR8064-201ENST00000612863 90 ntBASIC-0.52□□□□□ -2.49
SDC1P18827 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.53□□□□□ -2.49
SDC1P18827 SNORD114-11-201ENST00000363738 75 ntBASIC-0.53□□□□□ -2.49
SDC1P18827 Y_RNA.218-201ENST00000364218 104 ntBASIC-0.53□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms