Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.84□□□□□ -2.27
RAPGEF3O95398 SNORD116-10-201ENST00000363791 102 ntBASIC0.83□□□□□ -2.28
RAPGEF3O95398 SNORD58A-201ENST00000383875 65 ntBASIC0.83□□□□□ -2.28
RAPGEF3O95398 AL606490.4-201ENST00000423117 127 ntBASIC0.83□□□□□ -2.28
RAPGEF3O95398 RNU7-61P-201ENST00000515897 61 ntBASIC0.83□□□□□ -2.28
RAPGEF3O95398 RNU6-168P-201ENST00000516189 101 ntBASIC0.83□□□□□ -2.28
RAPGEF3O95398 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.83□□□□□ -2.28
RAPGEF3O95398 AC243829.6-201ENST00000612652 106 ntBASIC0.83□□□□□ -2.28
RAPGEF3O95398 MIR6828-201ENST00000636181 60 ntBASIC0.83□□□□□ -2.28
RAPGEF3O95398 Y_RNA.221-201ENST00000364248 96 ntBASIC0.82□□□□□ -2.28
RAPGEF3O95398 Y_RNA.348-201ENST00000365403 103 ntBASIC0.82□□□□□ -2.28
RAPGEF3O95398 RNU6-466P-201ENST00000391224 103 ntBASIC0.82□□□□□ -2.28
RAPGEF3O95398 RNA5SP63-201ENST00000391225 112 ntBASIC0.82□□□□□ -2.28
RAPGEF3O95398 Y_RNA.677-201ENST00000516401 85 ntBASIC0.82□□□□□ -2.28
RAPGEF3O95398 RNU6-1265P-201ENST00000516342 103 ntBASIC0.81□□□□□ -2.28
RAPGEF3O95398 RNU7-161P-201ENST00000517289 62 ntBASIC0.81□□□□□ -2.28
RAPGEF3O95398 AL627230.5-201ENST00000619807 58 ntBASIC0.81□□□□□ -2.28
RAPGEF3O95398 AC067863.3-201ENST00000624172 122 ntBASIC0.81□□□□□ -2.28
RAPGEF3O95398 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.8□□□□□ -2.28
RAPGEF3O95398 AC092634.7-201ENST00000621022 103 ntBASIC0.8□□□□□ -2.28
RAPGEF3O95398 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
RAPGEF3O95398 RNY1P8-201ENST00000383970 114 ntBASIC0.79□□□□□ -2.28
RAPGEF3O95398 RNA5SP89-201ENST00000410300 108 ntBASIC0.79□□□□□ -2.28
RAPGEF3O95398 TRDV1-202ENST00000621643 102 ntBASIC0.79□□□□□ -2.28
RAPGEF3O95398 SNORA36.1-201ENST00000363424 132 ntBASIC0.78□□□□□ -2.28
RAPGEF3O95398 SNORD115-44-201ENST00000365391 82 ntBASIC0.78□□□□□ -2.28
RAPGEF3O95398 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.78□□□□□ -2.28
RAPGEF3O95398 RNU7-104P-201ENST00000459398 79 ntBASIC0.78□□□□□ -2.28
RAPGEF3O95398 RNA5SP268-201ENST00000516828 124 ntBASIC0.78□□□□□ -2.28
RAPGEF3O95398 AC018659.1-201ENST00000551083 169 ntBASIC0.78□□□□□ -2.28
RAPGEF3O95398 U7.3-201ENST00000616123 62 ntBASIC0.78□□□□□ -2.28
RAPGEF3O95398 Y_RNA.283-201ENST00000364798 112 ntBASIC0.77□□□□□ -2.29
RAPGEF3O95398 RNU6-905P-201ENST00000384434 107 ntBASIC0.77□□□□□ -2.29
RAPGEF3O95398 RNA5SP227-201ENST00000516184 113 ntBASIC0.77□□□□□ -2.29
RAPGEF3O95398 RNU7-13P-201ENST00000516413 62 ntBASIC0.77□□□□□ -2.29
RAPGEF3O95398 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
RAPGEF3O95398 RNU6-640P-201ENST00000363693 105 ntBASIC0.76□□□□□ -2.29
RAPGEF3O95398 RNA5SP517-201ENST00000364724 117 ntBASIC0.76□□□□□ -2.29
RAPGEF3O95398 SNORA8.2-201ENST00000384372 139 ntBASIC0.76□□□□□ -2.29
RAPGEF3O95398 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.76□□□□□ -2.29
RAPGEF3O95398 snoU13.11-201ENST00000459219 104 ntBASIC0.76□□□□□ -2.29
RAPGEF3O95398 SNORA62.5-201ENST00000516634 120 ntBASIC0.76□□□□□ -2.29
RAPGEF3O95398 AC023932.2-201ENST00000603176 175 ntBASIC0.76□□□□□ -2.29
RAPGEF3O95398 RNU6-957P-201ENST00000363652 99 ntBASIC0.75□□□□□ -2.29
RAPGEF3O95398 SNORA40.8-201ENST00000411034 126 ntBASIC0.75□□□□□ -2.29
RAPGEF3O95398 MTATP6P29-201ENST00000415057 132 ntBASIC0.75□□□□□ -2.29
RAPGEF3O95398 RN7SKP12-201ENST00000516275 143 ntBASIC0.75□□□□□ -2.29
RAPGEF3O95398 RNU6-726P-201ENST00000364680 107 ntBASIC0.74□□□□□ -2.29
RAPGEF3O95398 SNORD41.1-201ENST00000391000 69 ntBASIC0.74□□□□□ -2.29
RAPGEF3O95398 MIR548L-201ENST00000408303 86 ntBASIC0.74□□□□□ -2.29
RAPGEF3O95398 Y_RNA.596-201ENST00000410462 109 ntBASIC0.74□□□□□ -2.29
RAPGEF3O95398 SNORD71-201ENST00000411292 86 ntBASIC0.74□□□□□ -2.29
RAPGEF3O95398 RNU6-65P-201ENST00000516332 98 ntBASIC0.74□□□□□ -2.29
RAPGEF3O95398 MALAT1.1-201ENST00000618249 95 ntBASIC0.74□□□□□ -2.29
RAPGEF3O95398 MIR6759-201ENST00000638110 65 ntBASIC0.74□□□□□ -2.29
RAPGEF3O95398 Y_RNA.290-201ENST00000364879 114 ntBASIC0.73□□□□□ -2.29
RAPGEF3O95398 AC114737.2-201ENST00000421583 173 ntBASIC0.73□□□□□ -2.29
RAPGEF3O95398 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.73□□□□□ -2.29
RAPGEF3O95398 MIR3920-201ENST00000581751 86 ntBASIC0.73□□□□□ -2.29
RAPGEF3O95398 MIR4536-1-201ENST00000583537 88 ntBASIC0.73□□□□□ -2.29
RAPGEF3O95398 RNU6-519P-201ENST00000410590 108 ntBASIC0.72□□□□□ -2.29
RAPGEF3O95398 RNU7-74P-201ENST00000459104 62 ntBASIC0.72□□□□□ -2.29
RAPGEF3O95398 RNU6-162P-201ENST00000516228 103 ntBASIC0.72□□□□□ -2.29
RAPGEF3O95398 Y_RNA.694-201ENST00000516677 117 ntBASIC0.72□□□□□ -2.29
RAPGEF3O95398 MTRNR2L2-201ENST00000604882 87 ntBASIC0.72□□□□□ -2.29
RAPGEF3O95398 SNORD118-201ENST00000363593 134 ntBASIC0.71□□□□□ -2.3
RAPGEF3O95398 RNU6-945P-201ENST00000383947 107 ntBASIC0.71□□□□□ -2.3
RAPGEF3O95398 MIR518A1-201ENST00000385068 85 ntBASIC0.71□□□□□ -2.3
RAPGEF3O95398 RNU4-54P-201ENST00000516428 129 ntBASIC0.71□□□□□ -2.3
RAPGEF3O95398 AL161932.1-201ENST00000437408 146 ntBASIC0.7□□□□□ -2.3
RAPGEF3O95398 MIR7107-201ENST00000611489 80 ntBASIC0.7□□□□□ -2.3
RAPGEF3O95398 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.7□□□□□ -2.3
RAPGEF3O95398 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.69□□□□□ -2.3
RAPGEF3O95398 Y_RNA.220-201ENST00000364244 109 ntBASIC0.69□□□□□ -2.3
RAPGEF3O95398 MIR92A1-201ENST00000385233 78 ntBASIC0.69□□□□□ -2.3
RAPGEF3O95398 RNU7-85P-201ENST00000458851 63 ntBASIC0.69□□□□□ -2.3
RAPGEF3O95398 SNORD4B-201ENST00000459083 72 ntBASIC0.69□□□□□ -2.3
RAPGEF3O95398 RNU6-75P-201ENST00000515944 104 ntBASIC0.69□□□□□ -2.3
RAPGEF3O95398 U6.100-201ENST00000636230 99 ntBASIC0.69□□□□□ -2.3
RAPGEF3O95398 RNU6-1126P-201ENST00000384002 107 ntBASIC0.68□□□□□ -2.3
RAPGEF3O95398 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.68□□□□□ -2.3
RAPGEF3O95398 AL162376.1-201ENST00000624117 175 ntBASIC0.68□□□□□ -2.3
RAPGEF3O95398 Y_RNA.190-201ENST00000363964 101 ntBASIC0.67□□□□□ -2.3
RAPGEF3O95398 SNORD101-201ENST00000384027 73 ntBASIC0.67□□□□□ -2.3
RAPGEF3O95398 RNU6-863P-201ENST00000515989 104 ntBASIC0.67□□□□□ -2.3
RAPGEF3O95398 RNU6-664P-201ENST00000362381 107 ntBASIC0.66□□□□□ -2.3
RAPGEF3O95398 MIR329-2-201ENST00000385029 84 ntBASIC0.66□□□□□ -2.3
RAPGEF3O95398 MIR617-201ENST00000385030 97 ntBASIC0.66□□□□□ -2.3
RAPGEF3O95398 MIR548U-201ENST00000390728 81 ntBASIC0.66□□□□□ -2.3
RAPGEF3O95398 SNORA25.18-201ENST00000607153 114 ntBASIC0.66□□□□□ -2.3
RAPGEF3O95398 MIR488-201ENST00000365739 83 ntBASIC0.65□□□□□ -2.31
RAPGEF3O95398 MIR1265-201ENST00000408444 86 ntBASIC0.65□□□□□ -2.31
RAPGEF3O95398 RNU2-59P-201ENST00000410482 191 ntBASIC0.65□□□□□ -2.31
RAPGEF3O95398 Y_RNA.609-201ENST00000410669 89 ntBASIC0.65□□□□□ -2.31
RAPGEF3O95398 RNU6-287P-201ENST00000516230 98 ntBASIC0.65□□□□□ -2.31
RAPGEF3O95398 MIR4696-201ENST00000581431 70 ntBASIC0.65□□□□□ -2.31
RAPGEF3O95398 MIR6718-201ENST00000616153 80 ntBASIC0.65□□□□□ -2.31
RAPGEF3O95398 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.64□□□□□ -2.31
RAPGEF3O95398 RNU6-509P-201ENST00000363519 107 ntBASIC0.64□□□□□ -2.31
RAPGEF3O95398 Y_RNA.239-201ENST00000364444 113 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 194.8 ms