Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 MIR548AG2-201ENST00000581228 64 ntBASIC0.76□□□□□ -2.29
LDB3O75112 MIR4696-201ENST00000581431 70 ntBASIC0.76□□□□□ -2.29
LDB3O75112 AC104996.3-201ENST00000590718 94 ntBASIC0.76□□□□□ -2.29
LDB3O75112 RNA5SP403-201ENST00000363598 108 ntBASIC0.75□□□□□ -2.29
LDB3O75112 Y_RNA.219-201ENST00000364232 113 ntBASIC0.75□□□□□ -2.29
LDB3O75112 RNU6-652P-201ENST00000365488 107 ntBASIC0.75□□□□□ -2.29
LDB3O75112 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
LDB3O75112 RNY1P8-201ENST00000383970 114 ntBASIC0.75□□□□□ -2.29
LDB3O75112 MIR518E-201ENST00000385252 88 ntBASIC0.75□□□□□ -2.29
LDB3O75112 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
LDB3O75112 AC093729.1-201ENST00000513074 128 ntBASIC0.75□□□□□ -2.29
LDB3O75112 RNU6-351P-201ENST00000516097 100 ntBASIC0.75□□□□□ -2.29
LDB3O75112 SNORA25.13-201ENST00000516395 103 ntBASIC0.75□□□□□ -2.29
LDB3O75112 MIR4666B-201ENST00000578142 81 ntBASIC0.75□□□□□ -2.29
LDB3O75112 AL078603.1-201ENST00000603824 313 ntBASIC0.75□□□□□ -2.29
LDB3O75112 MTRNR2L2-201ENST00000604882 87 ntBASIC0.75□□□□□ -2.29
LDB3O75112 AL353765.1-201ENST00000605514 183 ntBASIC0.75□□□□□ -2.29
LDB3O75112 RNU6-664P-201ENST00000362381 107 ntBASIC0.74□□□□□ -2.29
LDB3O75112 RNU6-478P-201ENST00000363904 110 ntBASIC0.74□□□□□ -2.29
LDB3O75112 Y_RNA.316-201ENST00000365118 111 ntBASIC0.74□□□□□ -2.29
LDB3O75112 Y_RNA.426-201ENST00000384068 113 ntBASIC0.74□□□□□ -2.29
LDB3O75112 RNU6-242P-201ENST00000384359 107 ntBASIC0.74□□□□□ -2.29
LDB3O75112 Y_RNA.491-201ENST00000384417 107 ntBASIC0.74□□□□□ -2.29
LDB3O75112 MIR1236-201ENST00000408340 102 ntBASIC0.74□□□□□ -2.29
LDB3O75112 AL450471.1-201ENST00000447509 127 ntBASIC0.74□□□□□ -2.29
LDB3O75112 RPS29P1-201ENST00000465274 159 ntBASIC0.74□□□□□ -2.29
LDB3O75112 PSMC1P5-201ENST00000512850 177 ntBASIC0.74□□□□□ -2.29
LDB3O75112 RNA5SP395-201ENST00000516567 118 ntBASIC0.74□□□□□ -2.29
LDB3O75112 AC011195.1-201ENST00000578177 177 ntBASIC0.74□□□□□ -2.29
LDB3O75112 MIR4796-201ENST00000580742 81 ntBASIC0.74□□□□□ -2.29
LDB3O75112 MIR3140-201ENST00000583685 90 ntBASIC0.74□□□□□ -2.29
LDB3O75112 SNORD18A-201ENST00000363753 72 ntBASIC0.73□□□□□ -2.29
LDB3O75112 Y_RNA.607-201ENST00000410597 98 ntBASIC0.73□□□□□ -2.29
LDB3O75112 RNA5SP220-201ENST00000516298 104 ntBASIC0.73□□□□□ -2.29
LDB3O75112 MIR3678-201ENST00000578455 94 ntBASIC0.73□□□□□ -2.29
LDB3O75112 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.73□□□□□ -2.29
LDB3O75112 Y_RNA.94-201ENST00000363068 106 ntBASIC0.72□□□□□ -2.29
LDB3O75112 Y_RNA.174-201ENST00000363781 105 ntBASIC0.72□□□□□ -2.29
LDB3O75112 Y_RNA.207-201ENST00000364142 106 ntBASIC0.72□□□□□ -2.29
LDB3O75112 RNA5SP117-201ENST00000365294 118 ntBASIC0.72□□□□□ -2.29
LDB3O75112 SNORD101-201ENST00000384027 73 ntBASIC0.72□□□□□ -2.29
LDB3O75112 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC0.72□□□□□ -2.29
LDB3O75112 snoU13.17-201ENST00000458802 104 ntBASIC0.72□□□□□ -2.29
LDB3O75112 RNU7-104P-201ENST00000459398 79 ntBASIC0.72□□□□□ -2.29
LDB3O75112 RNU6-287P-201ENST00000516230 98 ntBASIC0.72□□□□□ -2.29
LDB3O75112 AC244669.1-204ENST00000621564 178 ntBASIC0.72□□□□□ -2.29
LDB3O75112 MIR6866-201ENST00000638146 69 ntBASIC0.72□□□□□ -2.29
LDB3O75112 MIR18A-201ENST00000362310 71 ntBASIC0.71□□□□□ -2.3
LDB3O75112 SNORD28-201ENST00000384706 75 ntBASIC0.71□□□□□ -2.3
LDB3O75112 Y_RNA.596-201ENST00000410462 109 ntBASIC0.71□□□□□ -2.3
LDB3O75112 RNU6-1052P-201ENST00000411398 104 ntBASIC0.71□□□□□ -2.3
LDB3O75112 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.71□□□□□ -2.3
LDB3O75112 RNU6-719P-201ENST00000516671 104 ntBASIC0.71□□□□□ -2.3
LDB3O75112 MIR3920-201ENST00000581751 86 ntBASIC0.71□□□□□ -2.3
LDB3O75112 MIR4653-201ENST00000585107 83 ntBASIC0.71□□□□□ -2.3
LDB3O75112 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.71□□□□□ -2.3
LDB3O75112 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.7□□□□□ -2.3
LDB3O75112 RNU6-624P-201ENST00000363411 107 ntBASIC0.7□□□□□ -2.3
LDB3O75112 SNORA36.1-201ENST00000363424 132 ntBASIC0.7□□□□□ -2.3
LDB3O75112 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC0.7□□□□□ -2.3
LDB3O75112 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.7□□□□□ -2.3
LDB3O75112 MIR6734-201ENST00000621166 68 ntBASIC0.7□□□□□ -2.3
LDB3O75112 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
LDB3O75112 RNU6-1126P-201ENST00000384002 107 ntBASIC0.69□□□□□ -2.3
LDB3O75112 RNU6-42P-201ENST00000384165 107 ntBASIC0.69□□□□□ -2.3
LDB3O75112 RNU6-1108P-201ENST00000516308 104 ntBASIC0.69□□□□□ -2.3
LDB3O75112 RNA5SP47-201ENST00000517230 109 ntBASIC0.69□□□□□ -2.3
LDB3O75112 MIR6788-201ENST00000618842 66 ntBASIC0.69□□□□□ -2.3
LDB3O75112 MIR3202-2-201ENST00000635980 79 ntBASIC0.69□□□□□ -2.3
LDB3O75112 SNORA63.2-201ENST00000362603 126 ntBASIC0.68□□□□□ -2.3
LDB3O75112 RNU6-161P-201ENST00000363051 106 ntBASIC0.68□□□□□ -2.3
LDB3O75112 SNORD115-37-201ENST00000363768 82 ntBASIC0.68□□□□□ -2.3
LDB3O75112 Y_RNA.239-201ENST00000364444 113 ntBASIC0.68□□□□□ -2.3
LDB3O75112 RNU6-1051P-201ENST00000365471 102 ntBASIC0.68□□□□□ -2.3
LDB3O75112 RNU6-110P-201ENST00000384508 104 ntBASIC0.68□□□□□ -2.3
LDB3O75112 Y_RNA.532-201ENST00000384590 113 ntBASIC0.68□□□□□ -2.3
LDB3O75112 MIR548U-201ENST00000390728 81 ntBASIC0.68□□□□□ -2.3
LDB3O75112 MIR2113-201ENST00000459007 91 ntBASIC0.68□□□□□ -2.3
LDB3O75112 RNU7-13P-201ENST00000516413 62 ntBASIC0.68□□□□□ -2.3
LDB3O75112 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.68□□□□□ -2.3
LDB3O75112 CYP3A137P-201ENST00000562436 69 ntBASIC0.68□□□□□ -2.3
LDB3O75112 MIR4712-201ENST00000583750 82 ntBASIC0.68□□□□□ -2.3
LDB3O75112 MIR151B-201ENST00000584249 96 ntBASIC0.68□□□□□ -2.3
LDB3O75112 MIR6835-201ENST00000621552 64 ntBASIC0.68□□□□□ -2.3
LDB3O75112 RNU6-726P-201ENST00000364680 107 ntBASIC0.67□□□□□ -2.3
LDB3O75112 RNU6-716P-201ENST00000365621 103 ntBASIC0.67□□□□□ -2.3
LDB3O75112 MIR451A-201ENST00000385059 72 ntBASIC0.67□□□□□ -2.3
LDB3O75112 MIR146A-201ENST00000385201 99 ntBASIC0.67□□□□□ -2.3
LDB3O75112 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.67□□□□□ -2.3
LDB3O75112 RNA5SP222-201ENST00000411039 105 ntBASIC0.67□□□□□ -2.3
LDB3O75112 FGF7P7-201ENST00000514120 227 ntBASIC0.67□□□□□ -2.3
LDB3O75112 MIR4639-201ENST00000584938 69 ntBASIC0.67□□□□□ -2.3
LDB3O75112 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.66□□□□□ -2.3
LDB3O75112 RNU4-45P-201ENST00000365469 141 ntBASIC0.66□□□□□ -2.3
LDB3O75112 SNORA24B-201ENST00000384176 131 ntBASIC0.66□□□□□ -2.3
LDB3O75112 MIR519E-201ENST00000385075 84 ntBASIC0.66□□□□□ -2.3
LDB3O75112 MIR548J-201ENST00000408833 112 ntBASIC0.66□□□□□ -2.3
LDB3O75112 RNU6-935P-201ENST00000410371 100 ntBASIC0.66□□□□□ -2.3
LDB3O75112 RNU6-857P-201ENST00000515893 110 ntBASIC0.66□□□□□ -2.3
LDB3O75112 Y_RNA.685-201ENST00000516532 108 ntBASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 199.3 ms