Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 SNORD38.2-201ENST00000384470 69 ntBASIC1.3□□□□□ -2.2
CCDC9Q9Y3X0 RNU6-1321P-201ENST00000390905 107 ntBASIC1.3□□□□□ -2.2
CCDC9Q9Y3X0 MIR548G-201ENST00000408442 89 ntBASIC1.3□□□□□ -2.2
CCDC9Q9Y3X0 RNU4-83P-201ENST00000410863 133 ntBASIC1.3□□□□□ -2.2
CCDC9Q9Y3X0 RNU7-48P-201ENST00000458875 63 ntBASIC1.3□□□□□ -2.2
CCDC9Q9Y3X0 RNU6-90P-201ENST00000606352 106 ntBASIC1.3□□□□□ -2.2
CCDC9Q9Y3X0 AC105081.1-201ENST00000617727 106 ntBASIC1.3□□□□□ -2.2
CCDC9Q9Y3X0 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
CCDC9Q9Y3X0 Y_RNA.73-201ENST00000362910 113 ntBASIC1.29□□□□□ -2.2
CCDC9Q9Y3X0 RNU6-219P-201ENST00000364728 107 ntBASIC1.29□□□□□ -2.2
CCDC9Q9Y3X0 RNY1P13-201ENST00000365030 105 ntBASIC1.29□□□□□ -2.2
CCDC9Q9Y3X0 RNU6-497P-201ENST00000365316 104 ntBASIC1.29□□□□□ -2.2
CCDC9Q9Y3X0 RPL39P28-201ENST00000465655 155 ntBASIC1.29□□□□□ -2.2
CCDC9Q9Y3X0 MIR4668-201ENST00000582284 70 ntBASIC1.29□□□□□ -2.2
CCDC9Q9Y3X0 RNU6-1244P-201ENST00000363614 108 ntBASIC1.28□□□□□ -2.2
CCDC9Q9Y3X0 RNU6-1124P-201ENST00000384169 107 ntBASIC1.28□□□□□ -2.2
CCDC9Q9Y3X0 Y_RNA.567-201ENST00000384736 106 ntBASIC1.28□□□□□ -2.2
CCDC9Q9Y3X0 MIR573-201ENST00000384964 99 ntBASIC1.28□□□□□ -2.2
CCDC9Q9Y3X0 Y_RNA.620-201ENST00000411009 88 ntBASIC1.28□□□□□ -2.2
CCDC9Q9Y3X0 SPINT5P-201ENST00000448174 155 ntBASIC1.28□□□□□ -2.2
CCDC9Q9Y3X0 RNU7-102P-201ENST00000458948 62 ntBASIC1.28□□□□□ -2.2
CCDC9Q9Y3X0 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.28□□□□□ -2.2
CCDC9Q9Y3X0 SNORD92-201ENST00000585078 85 ntBASIC1.28□□□□□ -2.2
CCDC9Q9Y3X0 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.28□□□□□ -2.2
CCDC9Q9Y3X0 AP001362.1-201ENST00000625165 124 ntBASIC1.28□□□□□ -2.2
CCDC9Q9Y3X0 RNU6-228P-201ENST00000362700 106 ntBASIC1.27□□□□□ -2.21
CCDC9Q9Y3X0 RNU6-979P-201ENST00000383896 107 ntBASIC1.27□□□□□ -2.21
CCDC9Q9Y3X0 AC244098.3-201ENST00000424803 96 ntBASIC1.27□□□□□ -2.21
CCDC9Q9Y3X0 Y_RNA.681-201ENST00000516445 113 ntBASIC1.27□□□□□ -2.21
CCDC9Q9Y3X0 RNU6-267P-201ENST00000516714 103 ntBASIC1.27□□□□□ -2.21
CCDC9Q9Y3X0 AC133485.1-201ENST00000567176 124 ntBASIC1.27□□□□□ -2.21
CCDC9Q9Y3X0 MIR5588-201ENST00000581890 63 ntBASIC1.27□□□□□ -2.21
CCDC9Q9Y3X0 RNU6-403P-201ENST00000363163 104 ntBASIC1.26□□□□□ -2.21
CCDC9Q9Y3X0 Y_RNA.173-201ENST00000363776 113 ntBASIC1.26□□□□□ -2.21
CCDC9Q9Y3X0 RNA5SP330-201ENST00000517096 96 ntBASIC1.26□□□□□ -2.21
CCDC9Q9Y3X0 MTND5P40-201ENST00000559945 246 ntBASIC1.26□□□□□ -2.21
CCDC9Q9Y3X0 SNORD114-23-201ENST00000363536 72 ntBASIC1.25□□□□□ -2.21
CCDC9Q9Y3X0 Y_RNA.426-201ENST00000384068 113 ntBASIC1.25□□□□□ -2.21
CCDC9Q9Y3X0 RNU6-110P-201ENST00000384508 104 ntBASIC1.25□□□□□ -2.21
CCDC9Q9Y3X0 RNU7-171P-201ENST00000459581 62 ntBASIC1.25□□□□□ -2.21
CCDC9Q9Y3X0 MIR6513-201ENST00000621188 64 ntBASIC1.25□□□□□ -2.21
CCDC9Q9Y3X0 MIR924-201ENST00000638017 53 ntBASIC1.25□□□□□ -2.21
CCDC9Q9Y3X0 RNU6-509P-201ENST00000363519 107 ntBASIC1.24□□□□□ -2.21
CCDC9Q9Y3X0 RNU6-1125P-201ENST00000363601 107 ntBASIC1.24□□□□□ -2.21
CCDC9Q9Y3X0 RNY1P2-201ENST00000364820 117 ntBASIC1.24□□□□□ -2.21
CCDC9Q9Y3X0 RNU6-480P-201ENST00000384332 107 ntBASIC1.24□□□□□ -2.21
CCDC9Q9Y3X0 MIR1255A-201ENST00000408338 113 ntBASIC1.24□□□□□ -2.21
CCDC9Q9Y3X0 Y_RNA.609-201ENST00000410669 89 ntBASIC1.24□□□□□ -2.21
CCDC9Q9Y3X0 RNA5SP222-201ENST00000411039 105 ntBASIC1.24□□□□□ -2.21
CCDC9Q9Y3X0 HSBP1P2-201ENST00000299671 229 ntBASIC1.23□□□□□ -2.21
CCDC9Q9Y3X0 RNU6-633P-201ENST00000362612 103 ntBASIC1.23□□□□□ -2.21
CCDC9Q9Y3X0 SNORA72.6-201ENST00000384520 129 ntBASIC1.23□□□□□ -2.21
CCDC9Q9Y3X0 MIR181B2-201ENST00000385004 89 ntBASIC1.23□□□□□ -2.21
CCDC9Q9Y3X0 Y_RNA.611-201ENST00000410682 108 ntBASIC1.23□□□□□ -2.21
CCDC9Q9Y3X0 RNA5SP225-201ENST00000410874 135 ntBASIC1.23□□□□□ -2.21
CCDC9Q9Y3X0 RNA5SP395-201ENST00000516567 118 ntBASIC1.23□□□□□ -2.21
CCDC9Q9Y3X0 MIR4666B-201ENST00000578142 81 ntBASIC1.23□□□□□ -2.21
CCDC9Q9Y3X0 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
CCDC9Q9Y3X0 RNU6-787P-201ENST00000384032 107 ntBASIC1.22□□□□□ -2.21
CCDC9Q9Y3X0 AL161932.1-201ENST00000437408 146 ntBASIC1.22□□□□□ -2.21
CCDC9Q9Y3X0 AL513043.2-201ENST00000573941 143 ntBASIC1.22□□□□□ -2.21
CCDC9Q9Y3X0 AC090897.1-201ENST00000580909 226 ntBASIC1.22□□□□□ -2.21
CCDC9Q9Y3X0 AC008608.1-201ENST00000603910 127 ntBASIC1.22□□□□□ -2.21
CCDC9Q9Y3X0 AL109933.3-201ENST00000619095 188 ntBASIC1.22□□□□□ -2.21
CCDC9Q9Y3X0 MIR548BB-201ENST00000626714 66 ntBASIC1.22□□□□□ -2.21
CCDC9Q9Y3X0 Y_RNA.437-201ENST00000384113 113 ntBASIC1.21□□□□□ -2.22
CCDC9Q9Y3X0 MIR936-201ENST00000401264 98 ntBASIC1.21□□□□□ -2.22
CCDC9Q9Y3X0 MIR4653-201ENST00000585107 83 ntBASIC1.21□□□□□ -2.22
CCDC9Q9Y3X0 AC025521.1-201ENST00000621624 286 ntBASIC1.21□□□□□ -2.22
CCDC9Q9Y3X0 AC006160.2-201ENST00000637708 154 ntBASIC1.21□□□□□ -2.22
CCDC9Q9Y3X0 Y_RNA.258-201ENST00000364613 105 ntBASIC1.2□□□□□ -2.22
CCDC9Q9Y3X0 RNU6-279P-201ENST00000391297 101 ntBASIC1.2□□□□□ -2.22
CCDC9Q9Y3X0 Y_RNA.607-201ENST00000410597 98 ntBASIC1.2□□□□□ -2.22
CCDC9Q9Y3X0 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.2□□□□□ -2.22
CCDC9Q9Y3X0 AC138749.4-201ENST00000563970 127 ntBASIC1.2□□□□□ -2.22
CCDC9Q9Y3X0 AC138907.6-201ENST00000568401 126 ntBASIC1.2□□□□□ -2.22
CCDC9Q9Y3X0 MIR4491-201ENST00000581087 68 ntBASIC1.2□□□□□ -2.22
CCDC9Q9Y3X0 AC010487.4-201ENST00000637027 61 ntBASIC1.2□□□□□ -2.22
CCDC9Q9Y3X0 Y_RNA.313-201ENST00000365095 103 ntBASIC1.19□□□□□ -2.22
CCDC9Q9Y3X0 RNU4-45P-201ENST00000365469 141 ntBASIC1.19□□□□□ -2.22
CCDC9Q9Y3X0 Y_RNA.433-201ENST00000384089 102 ntBASIC1.19□□□□□ -2.22
CCDC9Q9Y3X0 SNRPGP12-201ENST00000449481 213 ntBASIC1.19□□□□□ -2.22
CCDC9Q9Y3X0 RNU6-448P-201ENST00000517052 107 ntBASIC1.19□□□□□ -2.22
CCDC9Q9Y3X0 MIR3612-201ENST00000579753 87 ntBASIC1.19□□□□□ -2.22
CCDC9Q9Y3X0 MIR8066-201ENST00000617280 78 ntBASIC1.19□□□□□ -2.22
CCDC9Q9Y3X0 U6.109-201ENST00000636749 87 ntBASIC1.19□□□□□ -2.22
CCDC9Q9Y3X0 Y_RNA.13-201ENST00000362403 112 ntBASIC1.18□□□□□ -2.22
CCDC9Q9Y3X0 RNA5SP133-201ENST00000363368 119 ntBASIC1.18□□□□□ -2.22
CCDC9Q9Y3X0 SNORA36.2-201ENST00000384004 127 ntBASIC1.18□□□□□ -2.22
CCDC9Q9Y3X0 RNU6-571P-201ENST00000384128 107 ntBASIC1.18□□□□□ -2.22
CCDC9Q9Y3X0 MIR519C-201ENST00000385053 87 ntBASIC1.18□□□□□ -2.22
CCDC9Q9Y3X0 Y_RNA.588-201ENST00000391254 102 ntBASIC1.18□□□□□ -2.22
CCDC9Q9Y3X0 MIR4500-201ENST00000579472 76 ntBASIC1.18□□□□□ -2.22
CCDC9Q9Y3X0 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC1.18□□□□□ -2.22
CCDC9Q9Y3X0 MIR6082-201ENST00000613604 109 ntBASIC1.18□□□□□ -2.22
CCDC9Q9Y3X0 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.17□□□□□ -2.22
CCDC9Q9Y3X0 Y_RNA.42-201ENST00000362660 108 ntBASIC1.17□□□□□ -2.22
CCDC9Q9Y3X0 Y_RNA.57-201ENST00000362806 113 ntBASIC1.17□□□□□ -2.22
CCDC9Q9Y3X0 Y_RNA.119-201ENST00000363301 96 ntBASIC1.17□□□□□ -2.22
CCDC9Q9Y3X0 RNA5SP62-201ENST00000363457 110 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 175.4 ms