Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 AL157834.3-201ENST00000615543 103 ntBASIC1.85□□□□□ -2.11
CHMP3Q9Y3E7 MIR4696-201ENST00000581431 70 ntBASIC1.84□□□□□ -2.11
CHMP3Q9Y3E7 ZNF209P-201ENST00000593450 2304 ntBASIC1.84□□□□□ -2.12
CHMP3Q9Y3E7 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
CHMP3Q9Y3E7 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.83□□□□□ -2.12
CHMP3Q9Y3E7 SNORD77.2-201ENST00000391045 68 ntBASIC1.83□□□□□ -2.12
CHMP3Q9Y3E7 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.83□□□□□ -2.12
CHMP3Q9Y3E7 snoU13.17-201ENST00000458802 104 ntBASIC1.83□□□□□ -2.12
CHMP3Q9Y3E7 AC004223.1-201ENST00000479840 271 ntBASIC1.83□□□□□ -2.12
CHMP3Q9Y3E7 RNU6-977P-201ENST00000516411 103 ntBASIC1.83□□□□□ -2.12
CHMP3Q9Y3E7 AC138907.6-201ENST00000568401 126 ntBASIC1.83□□□□□ -2.12
CHMP3Q9Y3E7 AC138869.1-201ENST00000568623 124 ntBASIC1.83□□□□□ -2.12
CHMP3Q9Y3E7 MIR4484-201ENST00000582855 83 ntBASIC1.83□□□□□ -2.12
CHMP3Q9Y3E7 MIR4781-201ENST00000585250 76 ntBASIC1.83□□□□□ -2.12
CHMP3Q9Y3E7 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
CHMP3Q9Y3E7 RNU6-664P-201ENST00000362381 107 ntBASIC1.82□□□□□ -2.12
CHMP3Q9Y3E7 SNORD101-201ENST00000384027 73 ntBASIC1.82□□□□□ -2.12
CHMP3Q9Y3E7 MIR520H-201ENST00000385126 88 ntBASIC1.82□□□□□ -2.12
CHMP3Q9Y3E7 MIR100-201ENST00000385259 80 ntBASIC1.82□□□□□ -2.12
CHMP3Q9Y3E7 RNU7-56P-201ENST00000458744 62 ntBASIC1.82□□□□□ -2.12
CHMP3Q9Y3E7 FAS-AS1.1-201ENST00000615327 126 ntBASIC1.82□□□□□ -2.12
CHMP3Q9Y3E7 RNU6-208P-201ENST00000362431 107 ntBASIC1.81□□□□□ -2.12
CHMP3Q9Y3E7 MIR3140-201ENST00000583685 90 ntBASIC1.81□□□□□ -2.12
CHMP3Q9Y3E7 SNORA7.1-201ENST00000363750 139 ntBASIC1.8□□□□□ -2.12
CHMP3Q9Y3E7 Y_RNA.239-201ENST00000364444 113 ntBASIC1.8□□□□□ -2.12
CHMP3Q9Y3E7 SNORA25.9-201ENST00000365087 128 ntBASIC1.8□□□□□ -2.12
CHMP3Q9Y3E7 RNU6-1051P-201ENST00000365471 102 ntBASIC1.8□□□□□ -2.12
CHMP3Q9Y3E7 RNU6-955P-201ENST00000410497 104 ntBASIC1.8□□□□□ -2.12
CHMP3Q9Y3E7 RNU6-1265P-201ENST00000516342 103 ntBASIC1.8□□□□□ -2.12
CHMP3Q9Y3E7 SNORA70.22-201ENST00000517160 124 ntBASIC1.8□□□□□ -2.12
CHMP3Q9Y3E7 MIR3134-201ENST00000579433 74 ntBASIC1.8□□□□□ -2.12
CHMP3Q9Y3E7 MIR520F-201ENST00000384824 87 ntBASIC1.79□□□□□ -2.12
CHMP3Q9Y3E7 AC073261.1-201ENST00000429409 121 ntBASIC1.79□□□□□ -2.12
CHMP3Q9Y3E7 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.79□□□□□ -2.12
CHMP3Q9Y3E7 Y_RNA.660-201ENST00000516002 120 ntBASIC1.79□□□□□ -2.12
CHMP3Q9Y3E7 MIR4421-201ENST00000578133 69 ntBASIC1.79□□□□□ -2.12
CHMP3Q9Y3E7 Y_RNA.32-201ENST00000362589 110 ntBASIC1.78□□□□□ -2.12
CHMP3Q9Y3E7 RNU1-119P-201ENST00000391122 165 ntBASIC1.78□□□□□ -2.12
CHMP3Q9Y3E7 RNU6-321P-201ENST00000410912 106 ntBASIC1.78□□□□□ -2.12
CHMP3Q9Y3E7 RNU6-523P-201ENST00000516304 54 ntBASIC1.78□□□□□ -2.12
CHMP3Q9Y3E7 Y_RNA.676-201ENST00000516393 96 ntBASIC1.78□□□□□ -2.12
CHMP3Q9Y3E7 MTRNR2L2-201ENST00000604882 87 ntBASIC1.78□□□□□ -2.12
CHMP3Q9Y3E7 AL359821.1-201ENST00000605519 182 ntBASIC1.78□□□□□ -2.12
CHMP3Q9Y3E7 MIR1-1-201ENST00000362147 71 ntBASIC1.77□□□□□ -2.13
CHMP3Q9Y3E7 TRMT112P2-201ENST00000512910 132 ntBASIC1.77□□□□□ -2.13
CHMP3Q9Y3E7 DLEU2_3.1-201ENST00000620005 73 ntBASIC1.77□□□□□ -2.13
CHMP3Q9Y3E7 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
CHMP3Q9Y3E7 MIR222-201ENST00000384992 110 ntBASIC1.76□□□□□ -2.13
CHMP3Q9Y3E7 Y_RNA.596-201ENST00000410462 109 ntBASIC1.76□□□□□ -2.13
CHMP3Q9Y3E7 SNORA31.14-201ENST00000516728 116 ntBASIC1.76□□□□□ -2.13
CHMP3Q9Y3E7 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.75□□□□□ -2.13
CHMP3Q9Y3E7 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
CHMP3Q9Y3E7 RNA5SP327-201ENST00000362494 101 ntBASIC1.75□□□□□ -2.13
CHMP3Q9Y3E7 Y_RNA.207-201ENST00000364142 106 ntBASIC1.75□□□□□ -2.13
CHMP3Q9Y3E7 MIR320A-201ENST00000385302 82 ntBASIC1.75□□□□□ -2.13
CHMP3Q9Y3E7 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.75□□□□□ -2.13
CHMP3Q9Y3E7 RNU6-1052P-201ENST00000411398 104 ntBASIC1.75□□□□□ -2.13
CHMP3Q9Y3E7 AC002429.1-201ENST00000437672 148 ntBASIC1.75□□□□□ -2.13
CHMP3Q9Y3E7 AC244505.6-201ENST00000452829 130 ntBASIC1.75□□□□□ -2.13
CHMP3Q9Y3E7 RNU6-719P-201ENST00000516671 104 ntBASIC1.75□□□□□ -2.13
CHMP3Q9Y3E7 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
CHMP3Q9Y3E7 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
CHMP3Q9Y3E7 MIR1827-201ENST00000408549 66 ntBASIC1.74□□□□□ -2.13
CHMP3Q9Y3E7 RNU6-380P-201ENST00000410207 107 ntBASIC1.74□□□□□ -2.13
CHMP3Q9Y3E7 AC139453.2-201ENST00000487255 133 ntBASIC1.74□□□□□ -2.13
CHMP3Q9Y3E7 uc_338.16-201ENST00000621804 95 ntBASIC1.74□□□□□ -2.13
CHMP3Q9Y3E7 MIR664A-201ENST00000626086 82 ntBASIC1.74□□□□□ -2.13
CHMP3Q9Y3E7 Y_RNA.12-201ENST00000362393 112 ntBASIC1.73□□□□□ -2.13
CHMP3Q9Y3E7 Y_RNA.327-201ENST00000365201 102 ntBASIC1.73□□□□□ -2.13
CHMP3Q9Y3E7 Y_RNA.545-201ENST00000384652 105 ntBASIC1.73□□□□□ -2.13
CHMP3Q9Y3E7 RMST_2.1-201ENST00000617263 136 ntBASIC1.73□□□□□ -2.13
CHMP3Q9Y3E7 RNU5F-1-201ENST00000362507 117 ntBASIC1.72□□□□□ -2.13
CHMP3Q9Y3E7 MIR451A-201ENST00000385059 72 ntBASIC1.72□□□□□ -2.13
CHMP3Q9Y3E7 Y_RNA.264-201ENST00000364665 102 ntBASIC1.71□□□□□ -2.14
CHMP3Q9Y3E7 RNU6-935P-201ENST00000410371 100 ntBASIC1.71□□□□□ -2.14
CHMP3Q9Y3E7 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.71□□□□□ -2.14
CHMP3Q9Y3E7 AL353770.2-201ENST00000620024 78 ntBASIC1.71□□□□□ -2.14
CHMP3Q9Y3E7 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.71□□□□□ -2.14
CHMP3Q9Y3E7 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
CHMP3Q9Y3E7 Y_RNA.371-201ENST00000365591 113 ntBASIC1.7□□□□□ -2.14
CHMP3Q9Y3E7 SNORD12-201ENST00000391002 90 ntBASIC1.7□□□□□ -2.14
CHMP3Q9Y3E7 AC067940.1-201ENST00000458411 300 ntBASIC1.7□□□□□ -2.14
CHMP3Q9Y3E7 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.7□□□□□ -2.14
CHMP3Q9Y3E7 RNA5SP61-201ENST00000516453 100 ntBASIC1.7□□□□□ -2.14
CHMP3Q9Y3E7 RNU6-303P-201ENST00000517091 106 ntBASIC1.7□□□□□ -2.14
CHMP3Q9Y3E7 SNORD26-201ENST00000384147 75 ntBASIC1.69□□□□□ -2.14
CHMP3Q9Y3E7 SNORA25-201ENST00000384384 134 ntBASIC1.69□□□□□ -2.14
CHMP3Q9Y3E7 AC074348.1-201ENST00000426503 132 ntBASIC1.69□□□□□ -2.14
CHMP3Q9Y3E7 RNU6-287P-201ENST00000516230 98 ntBASIC1.69□□□□□ -2.14
CHMP3Q9Y3E7 YWHAEP2-201ENST00000580066 112 ntBASIC1.69□□□□□ -2.14
CHMP3Q9Y3E7 YWHAEP3-201ENST00000582767 121 ntBASIC1.69□□□□□ -2.14
CHMP3Q9Y3E7 MIR337-201ENST00000362281 93 ntBASIC1.68□□□□□ -2.14
CHMP3Q9Y3E7 RNU6-330P-201ENST00000363015 107 ntBASIC1.68□□□□□ -2.14
CHMP3Q9Y3E7 SNORD115-24-201ENST00000363528 82 ntBASIC1.68□□□□□ -2.14
CHMP3Q9Y3E7 SNORA24B-201ENST00000384176 131 ntBASIC1.68□□□□□ -2.14
CHMP3Q9Y3E7 RPS29P23-201ENST00000458635 123 ntBASIC1.68□□□□□ -2.14
CHMP3Q9Y3E7 RNU1-123P-201ENST00000458950 160 ntBASIC1.68□□□□□ -2.14
CHMP3Q9Y3E7 RNU6-807P-201ENST00000516805 107 ntBASIC1.68□□□□□ -2.14
CHMP3Q9Y3E7 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
CHMP3Q9Y3E7 SNORD89-201ENST00000390981 114 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 234.4 ms