Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 SNORD4B-201ENST00000459083 72 ntBASIC0.85□□□□□ -2.27
VSX1Q9NZR4 MIR18A-201ENST00000362310 71 ntBASIC0.84□□□□□ -2.27
VSX1Q9NZR4 RNY1P10-201ENST00000363268 113 ntBASIC0.84□□□□□ -2.27
VSX1Q9NZR4 SNORD115-24-201ENST00000363528 82 ntBASIC0.84□□□□□ -2.27
VSX1Q9NZR4 RNU6-49P-201ENST00000384256 107 ntBASIC0.84□□□□□ -2.27
VSX1Q9NZR4 RNU6-524P-201ENST00000384270 107 ntBASIC0.84□□□□□ -2.27
VSX1Q9NZR4 ACA64.5-201ENST00000516207 127 ntBASIC0.84□□□□□ -2.27
VSX1Q9NZR4 MIR3678-201ENST00000578455 94 ntBASIC0.84□□□□□ -2.27
VSX1Q9NZR4 MIR6767-201ENST00000637302 66 ntBASIC0.84□□□□□ -2.27
VSX1Q9NZR4 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.84□□□□□ -2.28
VSX1Q9NZR4 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
VSX1Q9NZR4 RNA5SP403-201ENST00000363598 108 ntBASIC0.83□□□□□ -2.28
VSX1Q9NZR4 SNORD28-201ENST00000384706 75 ntBASIC0.83□□□□□ -2.28
VSX1Q9NZR4 Y_RNA.609-201ENST00000410669 89 ntBASIC0.83□□□□□ -2.28
VSX1Q9NZR4 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.83□□□□□ -2.28
VSX1Q9NZR4 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.83□□□□□ -2.28
VSX1Q9NZR4 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.83□□□□□ -2.28
VSX1Q9NZR4 RNU6-1134P-201ENST00000365156 101 ntBASIC0.82□□□□□ -2.28
VSX1Q9NZR4 RNY1P7-201ENST00000384743 110 ntBASIC0.82□□□□□ -2.28
VSX1Q9NZR4 MIR548U-201ENST00000390728 81 ntBASIC0.82□□□□□ -2.28
VSX1Q9NZR4 Y_RNA.596-201ENST00000410462 109 ntBASIC0.82□□□□□ -2.28
VSX1Q9NZR4 RNU6-1265P-201ENST00000516342 103 ntBASIC0.82□□□□□ -2.28
VSX1Q9NZR4 AC211469.2-201ENST00000605461 205 ntBASIC0.82□□□□□ -2.28
VSX1Q9NZR4 TRDV1-202ENST00000621643 102 ntBASIC0.82□□□□□ -2.28
VSX1Q9NZR4 Y_RNA.164-201ENST00000363709 102 ntBASIC0.81□□□□□ -2.28
VSX1Q9NZR4 MIR644A-201ENST00000385262 94 ntBASIC0.81□□□□□ -2.28
VSX1Q9NZR4 MIR1236-201ENST00000408340 102 ntBASIC0.81□□□□□ -2.28
VSX1Q9NZR4 RNU7-74P-201ENST00000459104 62 ntBASIC0.81□□□□□ -2.28
VSX1Q9NZR4 snoU13.11-201ENST00000459219 104 ntBASIC0.81□□□□□ -2.28
VSX1Q9NZR4 MIR4698-201ENST00000577795 80 ntBASIC0.81□□□□□ -2.28
VSX1Q9NZR4 MIR3973-201ENST00000579824 107 ntBASIC0.81□□□□□ -2.28
VSX1Q9NZR4 MIR4668-201ENST00000582284 70 ntBASIC0.81□□□□□ -2.28
VSX1Q9NZR4 AC067863.3-201ENST00000624172 122 ntBASIC0.81□□□□□ -2.28
VSX1Q9NZR4 RNU6-957P-201ENST00000363652 99 ntBASIC0.8□□□□□ -2.28
VSX1Q9NZR4 SNORD18A-201ENST00000363753 72 ntBASIC0.8□□□□□ -2.28
VSX1Q9NZR4 Y_RNA.221-201ENST00000364248 96 ntBASIC0.8□□□□□ -2.28
VSX1Q9NZR4 RNU6-820P-201ENST00000384273 107 ntBASIC0.8□□□□□ -2.28
VSX1Q9NZR4 MIR450A2-201ENST00000385022 100 ntBASIC0.8□□□□□ -2.28
VSX1Q9NZR4 MIR532-201ENST00000385025 91 ntBASIC0.8□□□□□ -2.28
VSX1Q9NZR4 MIR146A-201ENST00000385201 99 ntBASIC0.8□□□□□ -2.28
VSX1Q9NZR4 RNU7-13P-201ENST00000516413 62 ntBASIC0.8□□□□□ -2.28
VSX1Q9NZR4 RNA5SP102-201ENST00000516865 106 ntBASIC0.8□□□□□ -2.28
VSX1Q9NZR4 RNA5SP47-201ENST00000517230 109 ntBASIC0.8□□□□□ -2.28
VSX1Q9NZR4 MTRNR2L2-201ENST00000604882 87 ntBASIC0.8□□□□□ -2.28
VSX1Q9NZR4 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.8□□□□□ -2.28
VSX1Q9NZR4 MIR373-201ENST00000362273 69 ntBASIC0.79□□□□□ -2.28
VSX1Q9NZR4 RNU6-633P-201ENST00000362612 103 ntBASIC0.79□□□□□ -2.28
VSX1Q9NZR4 RNU6-675P-201ENST00000384236 104 ntBASIC0.79□□□□□ -2.28
VSX1Q9NZR4 MIR216B-201ENST00000390186 82 ntBASIC0.79□□□□□ -2.28
VSX1Q9NZR4 RNA5SP222-201ENST00000411039 105 ntBASIC0.79□□□□□ -2.28
VSX1Q9NZR4 RNU7-85P-201ENST00000458851 63 ntBASIC0.79□□□□□ -2.28
VSX1Q9NZR4 SCARNA16.5-201ENST00000517114 183 ntBASIC0.79□□□□□ -2.28
VSX1Q9NZR4 IGLL4P-201ENST00000614590 133 ntBASIC0.79□□□□□ -2.28
VSX1Q9NZR4 AC244669.1-204ENST00000621564 178 ntBASIC0.79□□□□□ -2.28
VSX1Q9NZR4 Y_RNA.239-201ENST00000364444 113 ntBASIC0.78□□□□□ -2.28
VSX1Q9NZR4 MIR1302-4-201ENST00000408701 150 ntBASIC0.78□□□□□ -2.28
VSX1Q9NZR4 Y_RNA.620-201ENST00000411009 88 ntBASIC0.78□□□□□ -2.28
VSX1Q9NZR4 MIR4653-201ENST00000585107 83 ntBASIC0.78□□□□□ -2.28
VSX1Q9NZR4 MIR6828-201ENST00000636181 60 ntBASIC0.78□□□□□ -2.28
VSX1Q9NZR4 Y_RNA.17-201ENST00000362433 111 ntBASIC0.77□□□□□ -2.29
VSX1Q9NZR4 RNU6-811P-201ENST00000384069 107 ntBASIC0.77□□□□□ -2.29
VSX1Q9NZR4 RNY1P4-201ENST00000384595 115 ntBASIC0.77□□□□□ -2.29
VSX1Q9NZR4 MIR519C-201ENST00000385053 87 ntBASIC0.77□□□□□ -2.29
VSX1Q9NZR4 MIR518E-201ENST00000385252 88 ntBASIC0.77□□□□□ -2.29
VSX1Q9NZR4 RNU6-75P-201ENST00000515944 104 ntBASIC0.77□□□□□ -2.29
VSX1Q9NZR4 RNU7-161P-201ENST00000517289 62 ntBASIC0.77□□□□□ -2.29
VSX1Q9NZR4 MIR6857-201ENST00000613267 93 ntBASIC0.77□□□□□ -2.29
VSX1Q9NZR4 RNU6-664P-201ENST00000362381 107 ntBASIC0.76□□□□□ -2.29
VSX1Q9NZR4 SNORD101-201ENST00000384027 73 ntBASIC0.76□□□□□ -2.29
VSX1Q9NZR4 SNORD41.1-201ENST00000391000 69 ntBASIC0.76□□□□□ -2.29
VSX1Q9NZR4 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.76□□□□□ -2.29
VSX1Q9NZR4 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.76□□□□□ -2.29
VSX1Q9NZR4 RNU6-509P-201ENST00000363519 107 ntBASIC0.75□□□□□ -2.29
VSX1Q9NZR4 SNORD115-37-201ENST00000363768 82 ntBASIC0.75□□□□□ -2.29
VSX1Q9NZR4 SNORD114-2-201ENST00000363953 78 ntBASIC0.75□□□□□ -2.29
VSX1Q9NZR4 PSMC1P5-201ENST00000512850 177 ntBASIC0.75□□□□□ -2.29
VSX1Q9NZR4 RNU6-351P-201ENST00000516097 100 ntBASIC0.75□□□□□ -2.29
VSX1Q9NZR4 RNU6-1057P-201ENST00000517162 102 ntBASIC0.75□□□□□ -2.29
VSX1Q9NZR4 RNY1P1-201ENST00000364372 112 ntBASIC0.74□□□□□ -2.29
VSX1Q9NZR4 RNU1-93P-201ENST00000364704 169 ntBASIC0.74□□□□□ -2.29
VSX1Q9NZR4 RNU6-219P-201ENST00000364728 107 ntBASIC0.74□□□□□ -2.29
VSX1Q9NZR4 SNORD114-22-201ENST00000365423 72 ntBASIC0.74□□□□□ -2.29
VSX1Q9NZR4 MIR140-201ENST00000385282 100 ntBASIC0.74□□□□□ -2.29
VSX1Q9NZR4 MIR548L-201ENST00000408303 86 ntBASIC0.74□□□□□ -2.29
VSX1Q9NZR4 RNU6-402P-201ENST00000410678 103 ntBASIC0.74□□□□□ -2.29
VSX1Q9NZR4 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.74□□□□□ -2.29
VSX1Q9NZR4 RNU7-104P-201ENST00000459398 79 ntBASIC0.74□□□□□ -2.29
VSX1Q9NZR4 MIR4696-201ENST00000581431 70 ntBASIC0.74□□□□□ -2.29
VSX1Q9NZR4 MIR8070-201ENST00000616510 88 ntBASIC0.74□□□□□ -2.29
VSX1Q9NZR4 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.73□□□□□ -2.29
VSX1Q9NZR4 RNY4P3-201ENST00000365254 95 ntBASIC0.73□□□□□ -2.29
VSX1Q9NZR4 U3.27-201ENST00000391237 200 ntBASIC0.73□□□□□ -2.29
VSX1Q9NZR4 MIR1276-201ENST00000408707 83 ntBASIC0.73□□□□□ -2.29
VSX1Q9NZR4 RNU6-935P-201ENST00000410371 100 ntBASIC0.73□□□□□ -2.29
VSX1Q9NZR4 Y_RNA.676-201ENST00000516393 96 ntBASIC0.73□□□□□ -2.29
VSX1Q9NZR4 RNA5SP94-201ENST00000516917 108 ntBASIC0.73□□□□□ -2.29
VSX1Q9NZR4 MIR3920-201ENST00000581751 86 ntBASIC0.73□□□□□ -2.29
VSX1Q9NZR4 AC104996.3-201ENST00000590718 94 ntBASIC0.73□□□□□ -2.29
VSX1Q9NZR4 AL590095.2-201ENST00000604136 117 ntBASIC0.73□□□□□ -2.29
VSX1Q9NZR4 SNORA36.2-201ENST00000384004 127 ntBASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 2121.3 ms