Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.26□□□□□ -2.21
NKX2-4Q9H2Z4 MIR450A2-201ENST00000385022 100 ntBASIC1.25□□□□□ -2.21
NKX2-4Q9H2Z4 MIR216A-201ENST00000385063 110 ntBASIC1.25□□□□□ -2.21
NKX2-4Q9H2Z4 Y_RNA.648-201ENST00000459455 110 ntBASIC1.25□□□□□ -2.21
NKX2-4Q9H2Z4 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.25□□□□□ -2.21
NKX2-4Q9H2Z4 AC025627.3-201ENST00000582078 182 ntBASIC1.25□□□□□ -2.21
NKX2-4Q9H2Z4 MIR4668-201ENST00000582284 70 ntBASIC1.25□□□□□ -2.21
NKX2-4Q9H2Z4 MIR1302-4-201ENST00000408701 150 ntBASIC1.24□□□□□ -2.21
NKX2-4Q9H2Z4 Y_RNA.593-201ENST00000410292 98 ntBASIC1.24□□□□□ -2.21
NKX2-4Q9H2Z4 RNU6-955P-201ENST00000410497 104 ntBASIC1.24□□□□□ -2.21
NKX2-4Q9H2Z4 RNU6-402P-201ENST00000410678 103 ntBASIC1.24□□□□□ -2.21
NKX2-4Q9H2Z4 AC097635.1-201ENST00000450678 155 ntBASIC1.24□□□□□ -2.21
NKX2-4Q9H2Z4 RNU6-762P-201ENST00000517107 102 ntBASIC1.24□□□□□ -2.21
NKX2-4Q9H2Z4 IGLL4P-201ENST00000614590 133 ntBASIC1.24□□□□□ -2.21
NKX2-4Q9H2Z4 Y_RNA.174-201ENST00000363781 105 ntBASIC1.23□□□□□ -2.21
NKX2-4Q9H2Z4 MIR758-201ENST00000390227 88 ntBASIC1.23□□□□□ -2.21
NKX2-4Q9H2Z4 RNU6-466P-201ENST00000391224 103 ntBASIC1.23□□□□□ -2.21
NKX2-4Q9H2Z4 AL161932.1-201ENST00000437408 146 ntBASIC1.23□□□□□ -2.21
NKX2-4Q9H2Z4 RNU6-1260P-201ENST00000362944 107 ntBASIC1.22□□□□□ -2.21
NKX2-4Q9H2Z4 RNA5SP245-201ENST00000364239 121 ntBASIC1.22□□□□□ -2.21
NKX2-4Q9H2Z4 RNA5SP117-201ENST00000365294 118 ntBASIC1.22□□□□□ -2.21
NKX2-4Q9H2Z4 MIR599-201ENST00000385069 95 ntBASIC1.22□□□□□ -2.21
NKX2-4Q9H2Z4 snoU13.11-201ENST00000459219 104 ntBASIC1.22□□□□□ -2.21
NKX2-4Q9H2Z4 AC068338.1-201ENST00000565567 176 ntBASIC1.22□□□□□ -2.21
NKX2-4Q9H2Z4 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC1.22□□□□□ -2.21
NKX2-4Q9H2Z4 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.22□□□□□ -2.21
NKX2-4Q9H2Z4 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
NKX2-4Q9H2Z4 MIR373-201ENST00000362273 69 ntBASIC1.21□□□□□ -2.22
NKX2-4Q9H2Z4 Y_RNA.32-201ENST00000362589 110 ntBASIC1.21□□□□□ -2.22
NKX2-4Q9H2Z4 RNY1P1-201ENST00000364372 112 ntBASIC1.21□□□□□ -2.22
NKX2-4Q9H2Z4 SNORA26.2-201ENST00000390922 122 ntBASIC1.21□□□□□ -2.22
NKX2-4Q9H2Z4 Y_RNA.620-201ENST00000411009 88 ntBASIC1.21□□□□□ -2.22
NKX2-4Q9H2Z4 SNORA72.7-201ENST00000516349 94 ntBASIC1.21□□□□□ -2.22
NKX2-4Q9H2Z4 RNA5SP255-201ENST00000516370 107 ntBASIC1.21□□□□□ -2.22
NKX2-4Q9H2Z4 SNORA31.14-201ENST00000516728 116 ntBASIC1.21□□□□□ -2.22
NKX2-4Q9H2Z4 AC211469.2-201ENST00000605461 205 ntBASIC1.21□□□□□ -2.22
NKX2-4Q9H2Z4 MIR7974-201ENST00000615835 79 ntBASIC1.21□□□□□ -2.22
NKX2-4Q9H2Z4 uc_338.16-201ENST00000621804 95 ntBASIC1.21□□□□□ -2.22
NKX2-4Q9H2Z4 MIR494-201ENST00000349529 81 ntBASIC1.2□□□□□ -2.22
NKX2-4Q9H2Z4 SNORD4B-201ENST00000459083 72 ntBASIC1.2□□□□□ -2.22
NKX2-4Q9H2Z4 AC002350.1-201ENST00000490759 375 ntBASIC1.2□□□□□ -2.22
NKX2-4Q9H2Z4 RNU6-65P-201ENST00000516332 98 ntBASIC1.2□□□□□ -2.22
NKX2-4Q9H2Z4 MIR4536-1-201ENST00000583537 88 ntBASIC1.2□□□□□ -2.22
NKX2-4Q9H2Z4 RNU6-219P-201ENST00000364728 107 ntBASIC1.19□□□□□ -2.22
NKX2-4Q9H2Z4 Y_RNA.283-201ENST00000364798 112 ntBASIC1.19□□□□□ -2.22
NKX2-4Q9H2Z4 RNU6-1335P-201ENST00000365426 107 ntBASIC1.19□□□□□ -2.22
NKX2-4Q9H2Z4 RNU6-675P-201ENST00000384236 104 ntBASIC1.19□□□□□ -2.22
NKX2-4Q9H2Z4 RNU6-524P-201ENST00000384270 107 ntBASIC1.19□□□□□ -2.22
NKX2-4Q9H2Z4 RNU6-820P-201ENST00000384273 107 ntBASIC1.19□□□□□ -2.22
NKX2-4Q9H2Z4 RNU7-85P-201ENST00000458851 63 ntBASIC1.19□□□□□ -2.22
NKX2-4Q9H2Z4 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.19□□□□□ -2.22
NKX2-4Q9H2Z4 RNU6-939P-201ENST00000384634 107 ntBASIC1.18□□□□□ -2.22
NKX2-4Q9H2Z4 RNY4P29-201ENST00000410801 97 ntBASIC1.18□□□□□ -2.22
NKX2-4Q9H2Z4 AC244505.6-201ENST00000452829 130 ntBASIC1.18□□□□□ -2.22
NKX2-4Q9H2Z4 RNU6ATAC17P-201ENST00000516074 71 ntBASIC1.18□□□□□ -2.22
NKX2-4Q9H2Z4 RN7SKP12-201ENST00000516275 143 ntBASIC1.18□□□□□ -2.22
NKX2-4Q9H2Z4 RNU6-267P-201ENST00000516714 103 ntBASIC1.18□□□□□ -2.22
NKX2-4Q9H2Z4 AC062037.1-201ENST00000605302 128 ntBASIC1.18□□□□□ -2.22
NKX2-4Q9H2Z4 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.17□□□□□ -2.22
NKX2-4Q9H2Z4 RNU6-957P-201ENST00000363652 99 ntBASIC1.17□□□□□ -2.22
NKX2-4Q9H2Z4 MIR573-201ENST00000384964 99 ntBASIC1.17□□□□□ -2.22
NKX2-4Q9H2Z4 RNU6-469P-201ENST00000516253 101 ntBASIC1.17□□□□□ -2.22
NKX2-4Q9H2Z4 snoMBII-202.2-201ENST00000517263 86 ntBASIC1.17□□□□□ -2.22
NKX2-4Q9H2Z4 RNU6-633P-201ENST00000362612 103 ntBASIC1.16□□□□□ -2.22
NKX2-4Q9H2Z4 CYP3A137P-201ENST00000562436 69 ntBASIC1.16□□□□□ -2.22
NKX2-4Q9H2Z4 TRDV1-202ENST00000621643 102 ntBASIC1.16□□□□□ -2.22
NKX2-4Q9H2Z4 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
NKX2-4Q9H2Z4 RNU4-32P-201ENST00000363404 141 ntBASIC1.15□□□□□ -2.23
NKX2-4Q9H2Z4 Y_RNA.178-201ENST00000363832 102 ntBASIC1.15□□□□□ -2.23
NKX2-4Q9H2Z4 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.15□□□□□ -2.23
NKX2-4Q9H2Z4 RNU6-509P-201ENST00000363519 107 ntBASIC1.14□□□□□ -2.23
NKX2-4Q9H2Z4 Y_RNA.221-201ENST00000364248 96 ntBASIC1.14□□□□□ -2.23
NKX2-4Q9H2Z4 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
NKX2-4Q9H2Z4 SNORD99-201ENST00000408612 74 ntBASIC1.14□□□□□ -2.23
NKX2-4Q9H2Z4 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.14□□□□□ -2.23
NKX2-4Q9H2Z4 Y_RNA.73-201ENST00000362910 113 ntBASIC1.13□□□□□ -2.23
NKX2-4Q9H2Z4 SNORD115-24-201ENST00000363528 82 ntBASIC1.13□□□□□ -2.23
NKX2-4Q9H2Z4 MIR519C-201ENST00000385053 87 ntBASIC1.13□□□□□ -2.23
NKX2-4Q9H2Z4 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.13□□□□□ -2.23
NKX2-4Q9H2Z4 RNU6-135P-201ENST00000516769 101 ntBASIC1.13□□□□□ -2.23
NKX2-4Q9H2Z4 MIR3612-201ENST00000579753 87 ntBASIC1.13□□□□□ -2.23
NKX2-4Q9H2Z4 MIR3973-201ENST00000579824 107 ntBASIC1.13□□□□□ -2.23
NKX2-4Q9H2Z4 Y_RNA.388-201ENST00000383919 113 ntBASIC1.12□□□□□ -2.23
NKX2-4Q9H2Z4 RNU6-811P-201ENST00000384069 107 ntBASIC1.12□□□□□ -2.23
NKX2-4Q9H2Z4 MIR644A-201ENST00000385262 94 ntBASIC1.12□□□□□ -2.23
NKX2-4Q9H2Z4 MIR1236-201ENST00000408340 102 ntBASIC1.12□□□□□ -2.23
NKX2-4Q9H2Z4 Y_RNA.611-201ENST00000410682 108 ntBASIC1.12□□□□□ -2.23
NKX2-4Q9H2Z4 AL606490.4-201ENST00000423117 127 ntBASIC1.12□□□□□ -2.23
NKX2-4Q9H2Z4 AC022137.1-201ENST00000483735 151 ntBASIC1.12□□□□□ -2.23
NKX2-4Q9H2Z4 RNU6-75P-201ENST00000515944 104 ntBASIC1.12□□□□□ -2.23
NKX2-4Q9H2Z4 AC011195.1-201ENST00000578177 177 ntBASIC1.12□□□□□ -2.23
NKX2-4Q9H2Z4 SNORD114-21-201ENST00000606412 72 ntBASIC1.12□□□□□ -2.23
NKX2-4Q9H2Z4 SNORD115-27-201ENST00000364430 82 ntBASIC1.11□□□□□ -2.23
NKX2-4Q9H2Z4 MIR193B-201ENST00000384907 83 ntBASIC1.11□□□□□ -2.23
NKX2-4Q9H2Z4 MIR150-201ENST00000385048 84 ntBASIC1.11□□□□□ -2.23
NKX2-4Q9H2Z4 MIR548U-201ENST00000390728 81 ntBASIC1.11□□□□□ -2.23
NKX2-4Q9H2Z4 MIR4661-201ENST00000582720 75 ntBASIC1.11□□□□□ -2.23
NKX2-4Q9H2Z4 MIR548BB-201ENST00000626714 66 ntBASIC1.11□□□□□ -2.23
NKX2-4Q9H2Z4 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.11□□□□□ -2.23
NKX2-4Q9H2Z4 SNORD115-37-201ENST00000363768 82 ntBASIC1.1□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 225 ms