Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 MIR4752-201ENST00000579672 72 ntBASIC0.24□□□□□ -2.37
ZNF541Q9H0D2 RNU1-29P-201ENST00000606574 126 ntBASIC0.24□□□□□ -2.37
ZNF541Q9H0D2 AL162726.3-218ENST00000636401 95 ntBASIC0.24□□□□□ -2.37
ZNF541Q9H0D2 RNY4P3-201ENST00000365254 95 ntBASIC0.23□□□□□ -2.37
ZNF541Q9H0D2 Y_RNA.342-201ENST00000365352 113 ntBASIC0.23□□□□□ -2.37
ZNF541Q9H0D2 RNU6-409P-201ENST00000384114 104 ntBASIC0.23□□□□□ -2.37
ZNF541Q9H0D2 Y_RNA.507-201ENST00000384500 99 ntBASIC0.23□□□□□ -2.37
ZNF541Q9H0D2 MIR516A2-201ENST00000384888 90 ntBASIC0.23□□□□□ -2.37
ZNF541Q9H0D2 MIR516A1-201ENST00000385033 90 ntBASIC0.23□□□□□ -2.37
ZNF541Q9H0D2 RPL39P34-201ENST00000477141 156 ntBASIC0.23□□□□□ -2.37
ZNF541Q9H0D2 Y_RNA.809-201ENST00000516058 95 ntBASIC0.23□□□□□ -2.37
ZNF541Q9H0D2 SNORD33.1-201ENST00000516213 88 ntBASIC0.23□□□□□ -2.37
ZNF541Q9H0D2 MTND5P40-201ENST00000559945 246 ntBASIC0.23□□□□□ -2.37
ZNF541Q9H0D2 AC007012.1-201ENST00000567192 175 ntBASIC0.23□□□□□ -2.37
ZNF541Q9H0D2 MIR4679-2-201ENST00000578358 77 ntBASIC0.23□□□□□ -2.37
ZNF541Q9H0D2 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.23□□□□□ -2.37
ZNF541Q9H0D2 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC0.23□□□□□ -2.37
ZNF541Q9H0D2 RNU6-1201P-201ENST00000384227 107 ntBASIC0.22□□□□□ -2.37
ZNF541Q9H0D2 SNORD38.2-201ENST00000384470 69 ntBASIC0.22□□□□□ -2.37
ZNF541Q9H0D2 Y_RNA.649-201ENST00000459077 103 ntBASIC0.22□□□□□ -2.37
ZNF541Q9H0D2 MIR5093-201ENST00000583199 100 ntBASIC0.22□□□□□ -2.37
ZNF541Q9H0D2 RNU6-1260P-201ENST00000362944 107 ntBASIC0.21□□□□□ -2.38
ZNF541Q9H0D2 MIR548A1-201ENST00000385041 97 ntBASIC0.21□□□□□ -2.38
ZNF541Q9H0D2 SNORD41.1-201ENST00000391000 69 ntBASIC0.21□□□□□ -2.38
ZNF541Q9H0D2 MIR548G-201ENST00000408442 89 ntBASIC0.21□□□□□ -2.38
ZNF541Q9H0D2 RNU7-129P-201ENST00000516128 62 ntBASIC0.21□□□□□ -2.38
ZNF541Q9H0D2 AC069113.3-201ENST00000521019 150 ntBASIC0.21□□□□□ -2.38
ZNF541Q9H0D2 AL162376.1-201ENST00000624117 175 ntBASIC0.21□□□□□ -2.38
ZNF541Q9H0D2 SNORD38.1-201ENST00000363863 68 ntBASIC0.2□□□□□ -2.38
ZNF541Q9H0D2 SNORD116-14-201ENST00000383894 92 ntBASIC0.2□□□□□ -2.38
ZNF541Q9H0D2 SNORD116-17-201ENST00000383929 92 ntBASIC0.2□□□□□ -2.38
ZNF541Q9H0D2 SNORD116-15-201ENST00000384445 92 ntBASIC0.2□□□□□ -2.38
ZNF541Q9H0D2 SNORD116-19-201ENST00000384729 92 ntBASIC0.2□□□□□ -2.38
ZNF541Q9H0D2 MIR577-201ENST00000385196 96 ntBASIC0.2□□□□□ -2.38
ZNF541Q9H0D2 MIR548M-201ENST00000408260 86 ntBASIC0.2□□□□□ -2.38
ZNF541Q9H0D2 SPINT5P-201ENST00000448174 155 ntBASIC0.2□□□□□ -2.38
ZNF541Q9H0D2 RNU6-90P-201ENST00000606352 106 ntBASIC0.2□□□□□ -2.38
ZNF541Q9H0D2 AL442128.1-201ENST00000615151 90 ntBASIC0.2□□□□□ -2.38
ZNF541Q9H0D2 SNORA9.1-201ENST00000362412 131 ntBASIC0.19□□□□□ -2.38
ZNF541Q9H0D2 Y_RNA.173-201ENST00000363776 113 ntBASIC0.19□□□□□ -2.38
ZNF541Q9H0D2 Y_RNA.323-201ENST00000365157 109 ntBASIC0.19□□□□□ -2.38
ZNF541Q9H0D2 Y_RNA.353-201ENST00000365440 108 ntBASIC0.19□□□□□ -2.38
ZNF541Q9H0D2 RNU6-524P-201ENST00000384270 107 ntBASIC0.19□□□□□ -2.38
ZNF541Q9H0D2 RNU6-959P-201ENST00000384671 107 ntBASIC0.19□□□□□ -2.38
ZNF541Q9H0D2 RNU6-269P-201ENST00000391077 97 ntBASIC0.19□□□□□ -2.38
ZNF541Q9H0D2 RNU6-1232P-201ENST00000516299 86 ntBASIC0.19□□□□□ -2.38
ZNF541Q9H0D2 MIR4768-201ENST00000585270 74 ntBASIC0.19□□□□□ -2.38
ZNF541Q9H0D2 RNU6-1333P-201ENST00000516162 93 ntBASIC0.18□□□□□ -2.38
ZNF541Q9H0D2 RNU6-1265P-201ENST00000516342 103 ntBASIC0.18□□□□□ -2.38
ZNF541Q9H0D2 MIR3920-201ENST00000581751 86 ntBASIC0.18□□□□□ -2.38
ZNF541Q9H0D2 SNORA70.25-201ENST00000612741 95 ntBASIC0.18□□□□□ -2.38
ZNF541Q9H0D2 U6.95-201ENST00000636931 70 ntBASIC0.18□□□□□ -2.38
ZNF541Q9H0D2 SNORD36A-201ENST00000362874 73 ntBASIC0.17□□□□□ -2.38
ZNF541Q9H0D2 Y_RNA.185-201ENST00000363894 100 ntBASIC0.17□□□□□ -2.38
ZNF541Q9H0D2 Y_RNA.261-201ENST00000364631 102 ntBASIC0.17□□□□□ -2.38
ZNF541Q9H0D2 Y_RNA.309-201ENST00000365046 111 ntBASIC0.17□□□□□ -2.38
ZNF541Q9H0D2 RNU6-81P-201ENST00000365608 104 ntBASIC0.17□□□□□ -2.38
ZNF541Q9H0D2 MIR548A3-201ENST00000385297 97 ntBASIC0.17□□□□□ -2.38
ZNF541Q9H0D2 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.17□□□□□ -2.38
ZNF541Q9H0D2 RNU6-758P-201ENST00000516292 89 ntBASIC0.17□□□□□ -2.38
ZNF541Q9H0D2 MIR4315-1-201ENST00000636800 73 ntBASIC0.17□□□□□ -2.38
ZNF541Q9H0D2 MIR4315-2-201ENST00000640925 73 ntBASIC0.17□□□□□ -2.38
ZNF541Q9H0D2 Y_RNA.57-201ENST00000362806 113 ntBASIC0.16□□□□□ -2.38
ZNF541Q9H0D2 SNORD114-15-201ENST00000364687 72 ntBASIC0.16□□□□□ -2.38
ZNF541Q9H0D2 U8.6-201ENST00000364939 135 ntBASIC0.16□□□□□ -2.38
ZNF541Q9H0D2 RNA5SP331-201ENST00000364986 107 ntBASIC0.16□□□□□ -2.38
ZNF541Q9H0D2 Y_RNA.377-201ENST00000365644 108 ntBASIC0.16□□□□□ -2.38
ZNF541Q9H0D2 MIR760-201ENST00000390220 80 ntBASIC0.16□□□□□ -2.38
ZNF541Q9H0D2 RNU6-1254P-201ENST00000391266 104 ntBASIC0.16□□□□□ -2.38
ZNF541Q9H0D2 RNU6-848P-201ENST00000515948 107 ntBASIC0.16□□□□□ -2.38
ZNF541Q9H0D2 RNU6-617P-201ENST00000516147 107 ntBASIC0.16□□□□□ -2.38
ZNF541Q9H0D2 RNU6-473P-201ENST00000516164 107 ntBASIC0.16□□□□□ -2.38
ZNF541Q9H0D2 RNU6-1049P-201ENST00000516414 107 ntBASIC0.16□□□□□ -2.38
ZNF541Q9H0D2 AC068339.1-201ENST00000526965 141 ntBASIC0.16□□□□□ -2.38
ZNF541Q9H0D2 MIR3613-201ENST00000579844 87 ntBASIC0.16□□□□□ -2.38
ZNF541Q9H0D2 AL670379.3-201ENST00000605040 251 ntBASIC0.16□□□□□ -2.38
ZNF541Q9H0D2 RNA5SP98-201ENST00000363158 137 ntBASIC0.15□□□□□ -2.38
ZNF541Q9H0D2 RNU6-1163P-201ENST00000364516 107 ntBASIC0.15□□□□□ -2.38
ZNF541Q9H0D2 Y_RNA.563-201ENST00000384707 108 ntBASIC0.15□□□□□ -2.38
ZNF541Q9H0D2 MIR4694-201ENST00000578534 80 ntBASIC0.15□□□□□ -2.38
ZNF541Q9H0D2 AL161932.1-201ENST00000437408 146 ntBASIC0.14□□□□□ -2.39
ZNF541Q9H0D2 RNU7-13P-201ENST00000516413 62 ntBASIC0.14□□□□□ -2.39
ZNF541Q9H0D2 RNU6-832P-201ENST00000363319 107 ntBASIC0.13□□□□□ -2.39
ZNF541Q9H0D2 RNA5SP128-201ENST00000365305 116 ntBASIC0.13□□□□□ -2.39
ZNF541Q9H0D2 MIR5009-201ENST00000578736 100 ntBASIC0.13□□□□□ -2.39
ZNF541Q9H0D2 MIR548AG2-201ENST00000581228 64 ntBASIC0.13□□□□□ -2.39
ZNF541Q9H0D2 uc_338.28-201ENST00000612082 187 ntBASIC0.13□□□□□ -2.39
ZNF541Q9H0D2 AL365222.1-201ENST00000614661 98 ntBASIC0.13□□□□□ -2.39
ZNF541Q9H0D2 MIR499B-201ENST00000636498 73 ntBASIC0.13□□□□□ -2.39
ZNF541Q9H0D2 RNU6-127P-201ENST00000390897 107 ntBASIC0.13□□□□□ -2.39
ZNF541Q9H0D2 RNU6-243P-201ENST00000391140 107 ntBASIC0.13□□□□□ -2.39
ZNF541Q9H0D2 TMSB4XP3-201ENST00000445144 114 ntBASIC0.13□□□□□ -2.39
ZNF541Q9H0D2 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.13□□□□□ -2.39
ZNF541Q9H0D2 IGLVI-20-201ENST00000519296 130 ntBASIC0.13□□□□□ -2.39
ZNF541Q9H0D2 RNY3P2-201ENST00000362918 102 ntBASIC0.12□□□□□ -2.39
ZNF541Q9H0D2 Y_RNA.281-201ENST00000364774 94 ntBASIC0.12□□□□□ -2.39
ZNF541Q9H0D2 RNA5SP484-201ENST00000458857 111 ntBASIC0.12□□□□□ -2.39
ZNF541Q9H0D2 TRDV1-202ENST00000621643 102 ntBASIC0.12□□□□□ -2.39
ZNF541Q9H0D2 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.11□□□□□ -2.39
ZNF541Q9H0D2 RNU6-957P-201ENST00000363652 99 ntBASIC0.11□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 213.4 ms