Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 RNU7-56P-201ENST00000458744 62 ntBASIC1.64□□□□□ -2.15
ZKSCAN3Q9BRR0 MIR4781-201ENST00000585250 76 ntBASIC1.64□□□□□ -2.15
ZKSCAN3Q9BRR0 AC008608.1-201ENST00000603910 127 ntBASIC1.64□□□□□ -2.15
ZKSCAN3Q9BRR0 AL359821.1-201ENST00000605519 182 ntBASIC1.64□□□□□ -2.15
ZKSCAN3Q9BRR0 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
ZKSCAN3Q9BRR0 MIRLET7A1-201ENST00000362295 80 ntBASIC1.63□□□□□ -2.15
ZKSCAN3Q9BRR0 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.63□□□□□ -2.15
ZKSCAN3Q9BRR0 AC145423.2-201ENST00000610631 239 ntBASIC1.63□□□□□ -2.15
ZKSCAN3Q9BRR0 RNU6-664P-201ENST00000362381 107 ntBASIC1.62□□□□□ -2.15
ZKSCAN3Q9BRR0 RNU6-161P-201ENST00000363051 106 ntBASIC1.62□□□□□ -2.15
ZKSCAN3Q9BRR0 Y_RNA.264-201ENST00000364665 102 ntBASIC1.62□□□□□ -2.15
ZKSCAN3Q9BRR0 SNORD101-201ENST00000384027 73 ntBASIC1.62□□□□□ -2.15
ZKSCAN3Q9BRR0 SNORD77.2-201ENST00000391045 68 ntBASIC1.62□□□□□ -2.15
ZKSCAN3Q9BRR0 MIR1827-201ENST00000408549 66 ntBASIC1.62□□□□□ -2.15
ZKSCAN3Q9BRR0 AC244505.6-201ENST00000452829 130 ntBASIC1.62□□□□□ -2.15
ZKSCAN3Q9BRR0 MIR4421-201ENST00000578133 69 ntBASIC1.62□□□□□ -2.15
ZKSCAN3Q9BRR0 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
ZKSCAN3Q9BRR0 RNA5SP245-201ENST00000364239 121 ntBASIC1.61□□□□□ -2.15
ZKSCAN3Q9BRR0 RNU6-997P-201ENST00000384725 107 ntBASIC1.61□□□□□ -2.15
ZKSCAN3Q9BRR0 MIR520F-201ENST00000384824 87 ntBASIC1.61□□□□□ -2.15
ZKSCAN3Q9BRR0 Y_RNA.596-201ENST00000410462 109 ntBASIC1.61□□□□□ -2.15
ZKSCAN3Q9BRR0 RNU6-1108P-201ENST00000516308 104 ntBASIC1.61□□□□□ -2.15
ZKSCAN3Q9BRR0 RNU6-1265P-201ENST00000516342 103 ntBASIC1.61□□□□□ -2.15
ZKSCAN3Q9BRR0 MTRNR2L2-201ENST00000604882 87 ntBASIC1.61□□□□□ -2.15
ZKSCAN3Q9BRR0 U6.100-201ENST00000636230 99 ntBASIC1.61□□□□□ -2.15
ZKSCAN3Q9BRR0 MIR4696-201ENST00000581431 70 ntBASIC1.6□□□□□ -2.15
ZKSCAN3Q9BRR0 U7.4-201ENST00000614961 63 ntBASIC1.6□□□□□ -2.15
ZKSCAN3Q9BRR0 AL157834.3-201ENST00000615543 103 ntBASIC1.6□□□□□ -2.15
ZKSCAN3Q9BRR0 SNORA7.1-201ENST00000363750 139 ntBASIC1.59□□□□□ -2.15
ZKSCAN3Q9BRR0 SNORA25-201ENST00000384384 134 ntBASIC1.59□□□□□ -2.15
ZKSCAN3Q9BRR0 AC002429.1-201ENST00000437672 148 ntBASIC1.59□□□□□ -2.15
ZKSCAN3Q9BRR0 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
ZKSCAN3Q9BRR0 RNU6-208P-201ENST00000362431 107 ntBASIC1.58□□□□□ -2.16
ZKSCAN3Q9BRR0 RNU5F-1-201ENST00000362507 117 ntBASIC1.58□□□□□ -2.16
ZKSCAN3Q9BRR0 Y_RNA.174-201ENST00000363781 105 ntBASIC1.58□□□□□ -2.16
ZKSCAN3Q9BRR0 RNY4P3-201ENST00000365254 95 ntBASIC1.58□□□□□ -2.16
ZKSCAN3Q9BRR0 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
ZKSCAN3Q9BRR0 RNU6-1229P-201ENST00000364295 107 ntBASIC1.57□□□□□ -2.16
ZKSCAN3Q9BRR0 RNU6-1051P-201ENST00000365471 102 ntBASIC1.57□□□□□ -2.16
ZKSCAN3Q9BRR0 MIR889-201ENST00000401280 79 ntBASIC1.57□□□□□ -2.16
ZKSCAN3Q9BRR0 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.57□□□□□ -2.16
ZKSCAN3Q9BRR0 RNU1-123P-201ENST00000458950 160 ntBASIC1.57□□□□□ -2.16
ZKSCAN3Q9BRR0 snoU13.31-201ENST00000607291 104 ntBASIC1.57□□□□□ -2.16
ZKSCAN3Q9BRR0 RMST_2.1-201ENST00000617263 136 ntBASIC1.57□□□□□ -2.16
ZKSCAN3Q9BRR0 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
ZKSCAN3Q9BRR0 Y_RNA.338-201ENST00000365320 114 ntBASIC1.56□□□□□ -2.16
ZKSCAN3Q9BRR0 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
ZKSCAN3Q9BRR0 RNU6-935P-201ENST00000410371 100 ntBASIC1.56□□□□□ -2.16
ZKSCAN3Q9BRR0 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.56□□□□□ -2.16
ZKSCAN3Q9BRR0 AC004223.1-201ENST00000479840 271 ntBASIC1.56□□□□□ -2.16
ZKSCAN3Q9BRR0 AL136317.1-201ENST00000612653 226 ntBASIC1.56□□□□□ -2.16
ZKSCAN3Q9BRR0 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
ZKSCAN3Q9BRR0 RNA5SP327-201ENST00000362494 101 ntBASIC1.55□□□□□ -2.16
ZKSCAN3Q9BRR0 Y_RNA.32-201ENST00000362589 110 ntBASIC1.55□□□□□ -2.16
ZKSCAN3Q9BRR0 MIR520H-201ENST00000385126 88 ntBASIC1.55□□□□□ -2.16
ZKSCAN3Q9BRR0 SNORD90-201ENST00000391145 111 ntBASIC1.55□□□□□ -2.16
ZKSCAN3Q9BRR0 DLEU2_3.1-201ENST00000620005 73 ntBASIC1.55□□□□□ -2.16
ZKSCAN3Q9BRR0 uc_338.16-201ENST00000621804 95 ntBASIC1.55□□□□□ -2.16
ZKSCAN3Q9BRR0 SNORD115-44-201ENST00000365391 82 ntBASIC1.54□□□□□ -2.16
ZKSCAN3Q9BRR0 AC073261.1-201ENST00000429409 121 ntBASIC1.54□□□□□ -2.16
ZKSCAN3Q9BRR0 SNORA31.14-201ENST00000516728 116 ntBASIC1.54□□□□□ -2.16
ZKSCAN3Q9BRR0 RNU6-807P-201ENST00000516805 107 ntBASIC1.54□□□□□ -2.16
ZKSCAN3Q9BRR0 MIR4498-201ENST00000577599 66 ntBASIC1.54□□□□□ -2.16
ZKSCAN3Q9BRR0 MIR1297-201ENST00000637311 77 ntBASIC1.54□□□□□ -2.16
ZKSCAN3Q9BRR0 AC068338.1-201ENST00000565567 176 ntBASIC1.53□□□□□ -2.16
ZKSCAN3Q9BRR0 FAS-AS1.1-201ENST00000615327 126 ntBASIC1.53□□□□□ -2.16
ZKSCAN3Q9BRR0 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
ZKSCAN3Q9BRR0 FABP5P4-201ENST00000437203 171 ntBASIC1.52□□□□□ -2.17
ZKSCAN3Q9BRR0 RNU6-1110P-201ENST00000516462 101 ntBASIC1.52□□□□□ -2.17
ZKSCAN3Q9BRR0 AL353770.2-201ENST00000620024 78 ntBASIC1.52□□□□□ -2.17
ZKSCAN3Q9BRR0 Y_RNA.207-201ENST00000364142 106 ntBASIC1.51□□□□□ -2.17
ZKSCAN3Q9BRR0 Y_RNA.545-201ENST00000384652 105 ntBASIC1.51□□□□□ -2.17
ZKSCAN3Q9BRR0 RNU6-303P-201ENST00000517091 106 ntBASIC1.51□□□□□ -2.17
ZKSCAN3Q9BRR0 RNU6-1057P-201ENST00000517162 102 ntBASIC1.51□□□□□ -2.17
ZKSCAN3Q9BRR0 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.51□□□□□ -2.17
ZKSCAN3Q9BRR0 SNORD115-24-201ENST00000363528 82 ntBASIC1.5□□□□□ -2.17
ZKSCAN3Q9BRR0 MIR19B1-201ENST00000384829 87 ntBASIC1.5□□□□□ -2.17
ZKSCAN3Q9BRR0 MIR451A-201ENST00000385059 72 ntBASIC1.5□□□□□ -2.17
ZKSCAN3Q9BRR0 SNORA40.6-201ENST00000391153 128 ntBASIC1.5□□□□□ -2.17
ZKSCAN3Q9BRR0 RNU7-13P-201ENST00000516413 62 ntBASIC1.5□□□□□ -2.17
ZKSCAN3Q9BRR0 YWHAEP2-201ENST00000580066 112 ntBASIC1.5□□□□□ -2.17
ZKSCAN3Q9BRR0 YWHAEP3-201ENST00000582767 121 ntBASIC1.5□□□□□ -2.17
ZKSCAN3Q9BRR0 MIR3660-201ENST00000584845 100 ntBASIC1.5□□□□□ -2.17
ZKSCAN3Q9BRR0 Y_RNA.12-201ENST00000362393 112 ntBASIC1.49□□□□□ -2.17
ZKSCAN3Q9BRR0 SNORD89-201ENST00000390981 114 ntBASIC1.49□□□□□ -2.17
ZKSCAN3Q9BRR0 snoU13.17-201ENST00000458802 104 ntBASIC1.49□□□□□ -2.17
ZKSCAN3Q9BRR0 U7.7-201ENST00000459276 60 ntBASIC1.49□□□□□ -2.17
ZKSCAN3Q9BRR0 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.49□□□□□ -2.17
ZKSCAN3Q9BRR0 RNA5SP403-201ENST00000363598 108 ntBASIC1.48□□□□□ -2.17
ZKSCAN3Q9BRR0 RNA5SP117-201ENST00000365294 118 ntBASIC1.48□□□□□ -2.17
ZKSCAN3Q9BRR0 Y_RNA.532-201ENST00000384590 113 ntBASIC1.48□□□□□ -2.17
ZKSCAN3Q9BRR0 Y_RNA.565-201ENST00000384719 101 ntBASIC1.48□□□□□ -2.17
ZKSCAN3Q9BRR0 MIR758-201ENST00000390227 88 ntBASIC1.48□□□□□ -2.17
ZKSCAN3Q9BRR0 SCARNA18B-201ENST00000458806 135 ntBASIC1.48□□□□□ -2.17
ZKSCAN3Q9BRR0 AC002350.1-201ENST00000490759 375 ntBASIC1.48□□□□□ -2.17
ZKSCAN3Q9BRR0 RNU6-135P-201ENST00000516769 101 ntBASIC1.48□□□□□ -2.17
ZKSCAN3Q9BRR0 Y_RNA.788-201ENST00000622394 112 ntBASIC1.48□□□□□ -2.17
ZKSCAN3Q9BRR0 Y_RNA.327-201ENST00000365201 102 ntBASIC1.47□□□□□ -2.17
ZKSCAN3Q9BRR0 MIR200A-201ENST00000384875 90 ntBASIC1.47□□□□□ -2.17
ZKSCAN3Q9BRR0 SNORD105-201ENST00000386910 85 ntBASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 246.3 ms