Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 MIR518E-201ENST00000385252 88 ntBASIC1.35□□□□□ -2.19
CLIP3Q96DZ5 MIR320A-201ENST00000385302 82 ntBASIC1.35□□□□□ -2.19
CLIP3Q96DZ5 RNU6-466P-201ENST00000391224 103 ntBASIC1.35□□□□□ -2.19
CLIP3Q96DZ5 AC004223.1-201ENST00000479840 271 ntBASIC1.35□□□□□ -2.19
CLIP3Q96DZ5 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.35□□□□□ -2.19
CLIP3Q96DZ5 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.35□□□□□ -2.19
CLIP3Q96DZ5 U7.4-201ENST00000614961 63 ntBASIC1.35□□□□□ -2.19
CLIP3Q96DZ5 FAS-AS1.1-201ENST00000615327 126 ntBASIC1.35□□□□□ -2.19
CLIP3Q96DZ5 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
CLIP3Q96DZ5 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
CLIP3Q96DZ5 RNU6-1094P-201ENST00000362416 104 ntBASIC1.34□□□□□ -2.19
CLIP3Q96DZ5 Y_RNA.56-201ENST00000362798 112 ntBASIC1.34□□□□□ -2.19
CLIP3Q96DZ5 Y_RNA.491-201ENST00000384417 107 ntBASIC1.34□□□□□ -2.19
CLIP3Q96DZ5 MIR635-201ENST00000384830 98 ntBASIC1.34□□□□□ -2.19
CLIP3Q96DZ5 MIR1257-201ENST00000408490 117 ntBASIC1.34□□□□□ -2.19
CLIP3Q96DZ5 AC092628.1-201ENST00000436250 252 ntBASIC1.34□□□□□ -2.19
CLIP3Q96DZ5 SCARNA18B-201ENST00000458806 135 ntBASIC1.34□□□□□ -2.19
CLIP3Q96DZ5 FGF7P7-201ENST00000514120 227 ntBASIC1.34□□□□□ -2.19
CLIP3Q96DZ5 RNU6-369P-201ENST00000362515 102 ntBASIC1.33□□□□□ -2.2
CLIP3Q96DZ5 RNU6-1260P-201ENST00000362944 107 ntBASIC1.33□□□□□ -2.2
CLIP3Q96DZ5 RNU6-934P-201ENST00000365154 107 ntBASIC1.33□□□□□ -2.2
CLIP3Q96DZ5 MIR125B2-201ENST00000385128 89 ntBASIC1.33□□□□□ -2.2
CLIP3Q96DZ5 RNU6-1108P-201ENST00000516308 104 ntBASIC1.33□□□□□ -2.2
CLIP3Q96DZ5 RNU6-765P-201ENST00000516916 99 ntBASIC1.33□□□□□ -2.2
CLIP3Q96DZ5 MIR548H5-201ENST00000580314 60 ntBASIC1.33□□□□□ -2.2
CLIP3Q96DZ5 AL353770.2-201ENST00000620024 78 ntBASIC1.33□□□□□ -2.2
CLIP3Q96DZ5 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
CLIP3Q96DZ5 MIR548U-201ENST00000390728 81 ntBASIC1.32□□□□□ -2.2
CLIP3Q96DZ5 Y_RNA.660-201ENST00000516002 120 ntBASIC1.32□□□□□ -2.2
CLIP3Q96DZ5 Y_RNA.809-201ENST00000516058 95 ntBASIC1.32□□□□□ -2.2
CLIP3Q96DZ5 RNU6-448P-201ENST00000517052 107 ntBASIC1.32□□□□□ -2.2
CLIP3Q96DZ5 AC023827.1-201ENST00000569247 97 ntBASIC1.32□□□□□ -2.2
CLIP3Q96DZ5 AC106800.4-201ENST00000614905 153 ntBASIC1.32□□□□□ -2.2
CLIP3Q96DZ5 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.32□□□□□ -2.2
CLIP3Q96DZ5 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
CLIP3Q96DZ5 MIR101-2-201ENST00000362195 79 ntBASIC1.31□□□□□ -2.2
CLIP3Q96DZ5 MIR200A-201ENST00000384875 90 ntBASIC1.31□□□□□ -2.2
CLIP3Q96DZ5 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
CLIP3Q96DZ5 SNORD111-201ENST00000408139 94 ntBASIC1.31□□□□□ -2.2
CLIP3Q96DZ5 RNA5SP61-201ENST00000516453 100 ntBASIC1.31□□□□□ -2.2
CLIP3Q96DZ5 MIR4771-2-201ENST00000577758 74 ntBASIC1.31□□□□□ -2.2
CLIP3Q96DZ5 MIR3134-201ENST00000579433 74 ntBASIC1.31□□□□□ -2.2
CLIP3Q96DZ5 MIR4771-1-201ENST00000582617 74 ntBASIC1.31□□□□□ -2.2
CLIP3Q96DZ5 MTRNR2L2-201ENST00000604882 87 ntBASIC1.31□□□□□ -2.2
CLIP3Q96DZ5 TRDV1-202ENST00000621643 102 ntBASIC1.31□□□□□ -2.2
CLIP3Q96DZ5 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
CLIP3Q96DZ5 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
CLIP3Q96DZ5 RNA5SP247-201ENST00000411181 105 ntBASIC1.3□□□□□ -2.2
CLIP3Q96DZ5 RPS26P5-201ENST00000418544 335 ntBASIC1.3□□□□□ -2.2
CLIP3Q96DZ5 Y_RNA.697-201ENST00000516776 113 ntBASIC1.3□□□□□ -2.2
CLIP3Q96DZ5 RNU7-10P-201ENST00000607194 63 ntBASIC1.3□□□□□ -2.2
CLIP3Q96DZ5 U6.100-201ENST00000636230 99 ntBASIC1.3□□□□□ -2.2
CLIP3Q96DZ5 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.29□□□□□ -2.2
CLIP3Q96DZ5 RNA5SP245-201ENST00000364239 121 ntBASIC1.29□□□□□ -2.2
CLIP3Q96DZ5 Y_RNA.545-201ENST00000384652 105 ntBASIC1.29□□□□□ -2.2
CLIP3Q96DZ5 SNORD77.2-201ENST00000391045 68 ntBASIC1.29□□□□□ -2.2
CLIP3Q96DZ5 AC097635.1-201ENST00000450678 155 ntBASIC1.29□□□□□ -2.2
CLIP3Q96DZ5 snoU13.17-201ENST00000458802 104 ntBASIC1.29□□□□□ -2.2
CLIP3Q96DZ5 RNU7-156P-201ENST00000517214 74 ntBASIC1.29□□□□□ -2.2
CLIP3Q96DZ5 MIR4696-201ENST00000581431 70 ntBASIC1.29□□□□□ -2.2
CLIP3Q96DZ5 MIR6078-201ENST00000611069 100 ntBASIC1.29□□□□□ -2.2
CLIP3Q96DZ5 AC074348.1-201ENST00000426503 132 ntBASIC1.28□□□□□ -2.2
CLIP3Q96DZ5 RNU6-1265P-201ENST00000516342 103 ntBASIC1.28□□□□□ -2.2
CLIP3Q96DZ5 MIR4676-201ENST00000583078 72 ntBASIC1.28□□□□□ -2.2
CLIP3Q96DZ5 RNU6-208P-201ENST00000362431 107 ntBASIC1.27□□□□□ -2.21
CLIP3Q96DZ5 SNORD114-24-201ENST00000365029 72 ntBASIC1.27□□□□□ -2.21
CLIP3Q96DZ5 SNORA25.9-201ENST00000365087 128 ntBASIC1.27□□□□□ -2.21
CLIP3Q96DZ5 RNU6-291P-201ENST00000384720 107 ntBASIC1.27□□□□□ -2.21
CLIP3Q96DZ5 RNU1-123P-201ENST00000458950 160 ntBASIC1.27□□□□□ -2.21
CLIP3Q96DZ5 SNORD124-201ENST00000459577 104 ntBASIC1.27□□□□□ -2.21
CLIP3Q96DZ5 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
CLIP3Q96DZ5 RNU6-664P-201ENST00000362381 107 ntBASIC1.26□□□□□ -2.21
CLIP3Q96DZ5 RNU6-1051P-201ENST00000365471 102 ntBASIC1.26□□□□□ -2.21
CLIP3Q96DZ5 MIR599-201ENST00000385069 95 ntBASIC1.26□□□□□ -2.21
CLIP3Q96DZ5 MIR4804-201ENST00000581683 73 ntBASIC1.26□□□□□ -2.21
CLIP3Q96DZ5 AC008608.1-201ENST00000603910 127 ntBASIC1.26□□□□□ -2.21
CLIP3Q96DZ5 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.25□□□□□ -2.21
CLIP3Q96DZ5 Y_RNA.264-201ENST00000364665 102 ntBASIC1.25□□□□□ -2.21
CLIP3Q96DZ5 RNU6-392P-201ENST00000364926 101 ntBASIC1.25□□□□□ -2.21
CLIP3Q96DZ5 SNORD101-201ENST00000384027 73 ntBASIC1.25□□□□□ -2.21
CLIP3Q96DZ5 MIR942-201ENST00000401111 86 ntBASIC1.25□□□□□ -2.21
CLIP3Q96DZ5 FABP5P4-201ENST00000437203 171 ntBASIC1.25□□□□□ -2.21
CLIP3Q96DZ5 AC138907.6-201ENST00000568401 126 ntBASIC1.25□□□□□ -2.21
CLIP3Q96DZ5 AC138869.1-201ENST00000568623 124 ntBASIC1.25□□□□□ -2.21
CLIP3Q96DZ5 MIR4484-201ENST00000582855 83 ntBASIC1.25□□□□□ -2.21
CLIP3Q96DZ5 MIR8070-201ENST00000616510 88 ntBASIC1.25□□□□□ -2.21
CLIP3Q96DZ5 Y_RNA.239-201ENST00000364444 113 ntBASIC1.24□□□□□ -2.21
CLIP3Q96DZ5 RNU6-788P-201ENST00000390967 104 ntBASIC1.24□□□□□ -2.21
CLIP3Q96DZ5 RNU6-994P-201ENST00000410507 111 ntBASIC1.24□□□□□ -2.21
CLIP3Q96DZ5 AC244505.6-201ENST00000452829 130 ntBASIC1.24□□□□□ -2.21
CLIP3Q96DZ5 RNU7-56P-201ENST00000458744 62 ntBASIC1.24□□□□□ -2.21
CLIP3Q96DZ5 RNU7-102P-201ENST00000458948 62 ntBASIC1.24□□□□□ -2.21
CLIP3Q96DZ5 RNU6-303P-201ENST00000517091 106 ntBASIC1.24□□□□□ -2.21
CLIP3Q96DZ5 MIR3140-201ENST00000583685 90 ntBASIC1.24□□□□□ -2.21
CLIP3Q96DZ5 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.23□□□□□ -2.21
CLIP3Q96DZ5 Y_RNA.207-201ENST00000364142 106 ntBASIC1.23□□□□□ -2.21
CLIP3Q96DZ5 Y_RNA.226-201ENST00000364337 114 ntBASIC1.23□□□□□ -2.21
CLIP3Q96DZ5 SNORA24B-201ENST00000384176 131 ntBASIC1.23□□□□□ -2.21
CLIP3Q96DZ5 RNU6-535P-201ENST00000384722 107 ntBASIC1.23□□□□□ -2.21
CLIP3Q96DZ5 MIR938-201ENST00000401216 83 ntBASIC1.23□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 175.6 ms