Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 RNU11-2P-201ENST00000516898 142 ntBASIC1.13□□□□□ -2.23
USP43Q70EL4 RNU6-165P-201ENST00000517170 99 ntBASIC1.13□□□□□ -2.23
USP43Q70EL4 MIR4264-201ENST00000583520 66 ntBASIC1.13□□□□□ -2.23
USP43Q70EL4 SNORD92-201ENST00000585078 85 ntBASIC1.13□□□□□ -2.23
USP43Q70EL4 Y_RNA.12-201ENST00000362393 112 ntBASIC1.12□□□□□ -2.23
USP43Q70EL4 Y_RNA.36-201ENST00000362602 112 ntBASIC1.12□□□□□ -2.23
USP43Q70EL4 Y_RNA.205-201ENST00000364128 113 ntBASIC1.12□□□□□ -2.23
USP43Q70EL4 RNU6-654P-201ENST00000364373 107 ntBASIC1.12□□□□□ -2.23
USP43Q70EL4 SNORA24B-201ENST00000384176 131 ntBASIC1.12□□□□□ -2.23
USP43Q70EL4 MIR519A1-201ENST00000385257 85 ntBASIC1.12□□□□□ -2.23
USP43Q70EL4 RNU6-243P-201ENST00000391140 107 ntBASIC1.12□□□□□ -2.23
USP43Q70EL4 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
USP43Q70EL4 MIR942-201ENST00000401111 86 ntBASIC1.12□□□□□ -2.23
USP43Q70EL4 AC125388.1-201ENST00000459631 156 ntBASIC1.12□□□□□ -2.23
USP43Q70EL4 RNU6-871P-201ENST00000516122 100 ntBASIC1.12□□□□□ -2.23
USP43Q70EL4 Y_RNA.681-201ENST00000516445 113 ntBASIC1.12□□□□□ -2.23
USP43Q70EL4 MIR3664-201ENST00000579074 99 ntBASIC1.12□□□□□ -2.23
USP43Q70EL4 YWHAEP2-201ENST00000580066 112 ntBASIC1.12□□□□□ -2.23
USP43Q70EL4 YWHAEP3-201ENST00000582767 121 ntBASIC1.12□□□□□ -2.23
USP43Q70EL4 MTRNR2L2-201ENST00000604882 87 ntBASIC1.12□□□□□ -2.23
USP43Q70EL4 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.12□□□□□ -2.23
USP43Q70EL4 MIR377-201ENST00000362145 69 ntBASIC1.11□□□□□ -2.23
USP43Q70EL4 Y_RNA.42-201ENST00000362660 108 ntBASIC1.11□□□□□ -2.23
USP43Q70EL4 RNA5SP264-201ENST00000363115 107 ntBASIC1.11□□□□□ -2.23
USP43Q70EL4 RNU6-154P-201ENST00000384306 106 ntBASIC1.11□□□□□ -2.23
USP43Q70EL4 RNU6-649P-201ENST00000384463 107 ntBASIC1.11□□□□□ -2.23
USP43Q70EL4 RNU6-800P-201ENST00000384473 103 ntBASIC1.11□□□□□ -2.23
USP43Q70EL4 RNU6-1241P-201ENST00000384536 107 ntBASIC1.11□□□□□ -2.23
USP43Q70EL4 RNU6-291P-201ENST00000384720 107 ntBASIC1.11□□□□□ -2.23
USP43Q70EL4 MT-TF-201ENST00000387314 71 ntBASIC1.11□□□□□ -2.23
USP43Q70EL4 SNORD100-201ENST00000408573 76 ntBASIC1.11□□□□□ -2.23
USP43Q70EL4 RNU6-380P-201ENST00000410207 107 ntBASIC1.11□□□□□ -2.23
USP43Q70EL4 Y_RNA.596-201ENST00000410462 109 ntBASIC1.11□□□□□ -2.23
USP43Q70EL4 AC015818.7-201ENST00000428754 109 ntBASIC1.11□□□□□ -2.23
USP43Q70EL4 MIR2115-201ENST00000516657 100 ntBASIC1.11□□□□□ -2.23
USP43Q70EL4 RNU6-807P-201ENST00000516805 107 ntBASIC1.11□□□□□ -2.23
USP43Q70EL4 MIR3937-201ENST00000580135 106 ntBASIC1.11□□□□□ -2.23
USP43Q70EL4 U6.111-201ENST00000636093 83 ntBASIC1.11□□□□□ -2.23
USP43Q70EL4 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
USP43Q70EL4 RNU6-340P-201ENST00000364005 107 ntBASIC1.1□□□□□ -2.23
USP43Q70EL4 Y_RNA.207-201ENST00000364142 106 ntBASIC1.1□□□□□ -2.23
USP43Q70EL4 RNU1-36P-201ENST00000365130 165 ntBASIC1.1□□□□□ -2.23
USP43Q70EL4 SNORD114-22-201ENST00000365423 72 ntBASIC1.1□□□□□ -2.23
USP43Q70EL4 RNU6-1051P-201ENST00000365471 102 ntBASIC1.1□□□□□ -2.23
USP43Q70EL4 RNU6-471P-201ENST00000383944 106 ntBASIC1.1□□□□□ -2.23
USP43Q70EL4 MIR548U-201ENST00000390728 81 ntBASIC1.1□□□□□ -2.23
USP43Q70EL4 RNA5SP95-201ENST00000410319 137 ntBASIC1.1□□□□□ -2.23
USP43Q70EL4 RNU2-59P-201ENST00000410482 191 ntBASIC1.1□□□□□ -2.23
USP43Q70EL4 RNU7-195P-201ENST00000458793 62 ntBASIC1.1□□□□□ -2.23
USP43Q70EL4 RNU7-62P-201ENST00000458856 62 ntBASIC1.1□□□□□ -2.23
USP43Q70EL4 RNU6-947P-201ENST00000516264 106 ntBASIC1.1□□□□□ -2.23
USP43Q70EL4 RNU7-156P-201ENST00000517214 74 ntBASIC1.1□□□□□ -2.23
USP43Q70EL4 MIR4696-201ENST00000581431 70 ntBASIC1.1□□□□□ -2.23
USP43Q70EL4 MIR3140-201ENST00000583685 90 ntBASIC1.1□□□□□ -2.23
USP43Q70EL4 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.1□□□□□ -2.23
USP43Q70EL4 RMST_2.1-201ENST00000617263 136 ntBASIC1.1□□□□□ -2.23
USP43Q70EL4 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.1□□□□□ -2.23
USP43Q70EL4 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.09□□□□□ -2.23
USP43Q70EL4 RNU6-53P-201ENST00000365367 106 ntBASIC1.09□□□□□ -2.23
USP43Q70EL4 RNU6-1065P-201ENST00000384513 106 ntBASIC1.09□□□□□ -2.23
USP43Q70EL4 Y_RNA.536-201ENST00000384621 113 ntBASIC1.09□□□□□ -2.23
USP43Q70EL4 MIR618-201ENST00000385287 98 ntBASIC1.09□□□□□ -2.23
USP43Q70EL4 RNU6-466P-201ENST00000391224 103 ntBASIC1.09□□□□□ -2.23
USP43Q70EL4 Y_RNA.606-201ENST00000410579 103 ntBASIC1.09□□□□□ -2.23
USP43Q70EL4 RNU6-1054P-201ENST00000411293 104 ntBASIC1.09□□□□□ -2.23
USP43Q70EL4 snoU13.21-201ENST00000459368 105 ntBASIC1.09□□□□□ -2.23
USP43Q70EL4 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.09□□□□□ -2.23
USP43Q70EL4 AL512310.8-201ENST00000550183 120 ntBASIC1.09□□□□□ -2.23
USP43Q70EL4 MIR3660-201ENST00000584845 100 ntBASIC1.09□□□□□ -2.23
USP43Q70EL4 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.09□□□□□ -2.23
USP43Q70EL4 AC013244.2-201ENST00000603396 103 ntBASIC1.09□□□□□ -2.23
USP43Q70EL4 AC005520.4-201ENST00000604337 90 ntBASIC1.09□□□□□ -2.23
USP43Q70EL4 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
USP43Q70EL4 MIR103A2-201ENST00000362154 78 ntBASIC1.08□□□□□ -2.24
USP43Q70EL4 RNU6-1260P-201ENST00000362944 107 ntBASIC1.08□□□□□ -2.24
USP43Q70EL4 RNU4-58P-201ENST00000363192 141 ntBASIC1.08□□□□□ -2.24
USP43Q70EL4 MIR7-2-201ENST00000384970 110 ntBASIC1.08□□□□□ -2.24
USP43Q70EL4 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
USP43Q70EL4 AL591704.2-201ENST00000421658 181 ntBASIC1.08□□□□□ -2.24
USP43Q70EL4 MIR18B-201ENST00000454574 71 ntBASIC1.08□□□□□ -2.24
USP43Q70EL4 TRDV1-202ENST00000621643 102 ntBASIC1.08□□□□□ -2.24
USP43Q70EL4 U6.100-201ENST00000636230 99 ntBASIC1.08□□□□□ -2.24
USP43Q70EL4 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.08□□□□□ -2.24
USP43Q70EL4 RNU6-664P-201ENST00000362381 107 ntBASIC1.07□□□□□ -2.24
USP43Q70EL4 RNU6-824P-201ENST00000363724 104 ntBASIC1.07□□□□□ -2.24
USP43Q70EL4 SNORD116-24-201ENST00000384549 92 ntBASIC1.07□□□□□ -2.24
USP43Q70EL4 SNORA40.6-201ENST00000391153 128 ntBASIC1.07□□□□□ -2.24
USP43Q70EL4 AC092628.1-201ENST00000436250 252 ntBASIC1.07□□□□□ -2.24
USP43Q70EL4 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
USP43Q70EL4 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.07□□□□□ -2.24
USP43Q70EL4 Y_RNA.56-201ENST00000362798 112 ntBASIC1.06□□□□□ -2.24
USP43Q70EL4 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
USP43Q70EL4 RNU6-663P-201ENST00000391105 106 ntBASIC1.06□□□□□ -2.24
USP43Q70EL4 SNORD30.1-201ENST00000391309 70 ntBASIC1.06□□□□□ -2.24
USP43Q70EL4 SNORD93-201ENST00000408813 74 ntBASIC1.06□□□□□ -2.24
USP43Q70EL4 MIR6082-201ENST00000613604 109 ntBASIC1.06□□□□□ -2.24
USP43Q70EL4 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
USP43Q70EL4 Y_RNA.13-201ENST00000362403 112 ntBASIC1.05□□□□□ -2.24
USP43Q70EL4 RNA5SP245-201ENST00000364239 121 ntBASIC1.05□□□□□ -2.24
USP43Q70EL4 SNORD115-22-201ENST00000364456 82 ntBASIC1.05□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 197.5 ms