Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 MIR376A1-201ENST00000616574 68 ntBASIC-1.76□□□□□ -2.69
USF3Q68DE3 AC024614.3-201ENST00000637860 256 ntBASIC-1.76□□□□□ -2.69
USF3Q68DE3 Y_RNA.176-201ENST00000363815 109 ntBASIC-1.76□□□□□ -2.69
USF3Q68DE3 SNORA33.1-201ENST00000364957 130 ntBASIC-1.76□□□□□ -2.69
USF3Q68DE3 RNU6-1014P-201ENST00000383940 103 ntBASIC-1.76□□□□□ -2.69
USF3Q68DE3 RPL35AP4-201ENST00000412007 102 ntBASIC-1.76□□□□□ -2.69
USF3Q68DE3 AC138393.2-201ENST00000414742 246 ntBASIC-1.76□□□□□ -2.69
USF3Q68DE3 Y_RNA.633-201ENST00000459107 95 ntBASIC-1.76□□□□□ -2.69
USF3Q68DE3 RNU6-358P-201ENST00000516564 75 ntBASIC-1.76□□□□□ -2.69
USF3Q68DE3 RNU7-4P-201ENST00000516961 62 ntBASIC-1.76□□□□□ -2.69
USF3Q68DE3 IGHVII-40-1-201ENST00000517316 58 ntBASIC-1.76□□□□□ -2.69
USF3Q68DE3 Y_RNA.778-201ENST00000620203 90 ntBASIC-1.76□□□□□ -2.69
USF3Q68DE3 SNORA63.2-201ENST00000362603 126 ntBASIC-1.77□□□□□ -2.69
USF3Q68DE3 RNY3P11-201ENST00000364153 102 ntBASIC-1.77□□□□□ -2.69
USF3Q68DE3 RNU6-818P-201ENST00000364837 108 ntBASIC-1.77□□□□□ -2.69
USF3Q68DE3 RNU6-1283P-201ENST00000365314 105 ntBASIC-1.77□□□□□ -2.69
USF3Q68DE3 SEPT14P8-201ENST00000508026 178 ntBASIC-1.77□□□□□ -2.69
USF3Q68DE3 Y_RNA.713-201ENST00000517013 96 ntBASIC-1.77□□□□□ -2.69
USF3Q68DE3 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.77□□□□□ -2.69
USF3Q68DE3 Y_RNA.153-201ENST00000363615 91 ntBASIC-1.78□□□□□ -2.69
USF3Q68DE3 Y_RNA.298-201ENST00000364960 107 ntBASIC-1.78□□□□□ -2.69
USF3Q68DE3 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.78□□□□□ -2.69
USF3Q68DE3 MIR519A2-201ENST00000384990 87 ntBASIC-1.78□□□□□ -2.69
USF3Q68DE3 RNU6-1109P-201ENST00000391187 107 ntBASIC-1.78□□□□□ -2.69
USF3Q68DE3 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.78□□□□□ -2.69
USF3Q68DE3 AC099799.1-201ENST00000439809 192 ntBASIC-1.78□□□□□ -2.69
USF3Q68DE3 RNU7-169P-201ENST00000459456 61 ntBASIC-1.78□□□□□ -2.69
USF3Q68DE3 VN1R91P-201ENST00000594377 169 ntBASIC-1.78□□□□□ -2.69
USF3Q68DE3 AC103591.3-201ENST00000608684 209 ntBASIC-1.78□□□□□ -2.69
USF3Q68DE3 MIR6739-201ENST00000622461 75 ntBASIC-1.78□□□□□ -2.69
USF3Q68DE3 MIR1321-201ENST00000637766 79 ntBASIC-1.78□□□□□ -2.69
USF3Q68DE3 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.78□□□□□ -2.69
USF3Q68DE3 Y_RNA.482-201ENST00000384377 111 ntBASIC-1.78□□□□□ -2.69
USF3Q68DE3 Y_RNA.605-201ENST00000410577 105 ntBASIC-1.78□□□□□ -2.69
USF3Q68DE3 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC-1.78□□□□□ -2.69
USF3Q68DE3 RNU6-1281P-201ENST00000516223 105 ntBASIC-1.78□□□□□ -2.69
USF3Q68DE3 RNU6-1213P-201ENST00000517075 94 ntBASIC-1.78□□□□□ -2.69
USF3Q68DE3 RNU6-1314P-201ENST00000517139 104 ntBASIC-1.78□□□□□ -2.69
USF3Q68DE3 Y_RNA.39-201ENST00000362620 98 ntBASIC-1.79□□□□□ -2.7
USF3Q68DE3 RNU6-260P-201ENST00000384092 107 ntBASIC-1.79□□□□□ -2.7
USF3Q68DE3 RNU6-415P-201ENST00000516252 97 ntBASIC-1.79□□□□□ -2.7
USF3Q68DE3 MIR4536-1-201ENST00000583537 88 ntBASIC-1.79□□□□□ -2.7
USF3Q68DE3 MIRLET7F1-201ENST00000362202 87 ntBASIC-1.79□□□□□ -2.7
USF3Q68DE3 Y_RNA.813-201ENST00000364639 102 ntBASIC-1.79□□□□□ -2.7
USF3Q68DE3 Y_RNA.314-201ENST00000365114 102 ntBASIC-1.79□□□□□ -2.7
USF3Q68DE3 MIR548F5-201ENST00000408421 86 ntBASIC-1.79□□□□□ -2.7
USF3Q68DE3 Z83846.1-201ENST00000446798 265 ntBASIC-1.79□□□□□ -2.7
USF3Q68DE3 RNU7-123P-201ENST00000515911 60 ntBASIC-1.79□□□□□ -2.7
USF3Q68DE3 RNU4-90P-201ENST00000362773 141 ntBASIC-1.8□□□□□ -2.7
USF3Q68DE3 Y_RNA.75-201ENST00000362927 97 ntBASIC-1.8□□□□□ -2.7
USF3Q68DE3 Y_RNA.441-201ENST00000384123 112 ntBASIC-1.8□□□□□ -2.7
USF3Q68DE3 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.8□□□□□ -2.7
USF3Q68DE3 Y_RNA.622-201ENST00000411091 108 ntBASIC-1.8□□□□□ -2.7
USF3Q68DE3 RNU6-75P-201ENST00000515944 104 ntBASIC-1.8□□□□□ -2.7
USF3Q68DE3 AC138305.3-201ENST00000624988 240 ntBASIC-1.8□□□□□ -2.7
USF3Q68DE3 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC-1.81□□□□□ -2.7
USF3Q68DE3 RNU6-451P-201ENST00000362921 107 ntBASIC-1.81□□□□□ -2.7
USF3Q68DE3 Y_RNA.83-201ENST00000363005 113 ntBASIC-1.81□□□□□ -2.7
USF3Q68DE3 RNU6-978P-201ENST00000364371 103 ntBASIC-1.81□□□□□ -2.7
USF3Q68DE3 Y_RNA.409-201ENST00000383990 98 ntBASIC-1.81□□□□□ -2.7
USF3Q68DE3 MIR34C-201ENST00000384831 77 ntBASIC-1.81□□□□□ -2.7
USF3Q68DE3 MIR616-201ENST00000385293 97 ntBASIC-1.81□□□□□ -2.7
USF3Q68DE3 RNU6-780P-201ENST00000391030 104 ntBASIC-1.81□□□□□ -2.7
USF3Q68DE3 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC-1.81□□□□□ -2.7
USF3Q68DE3 AL359880.1-201ENST00000621879 266 ntBASIC-1.81□□□□□ -2.7
USF3Q68DE3 AC073869.6-201ENST00000640656 341 ntBASIC-1.81□□□□□ -2.7
USF3Q68DE3 RNU6-1188P-201ENST00000363795 107 ntBASIC-1.81□□□□□ -2.7
USF3Q68DE3 RNU6-990P-201ENST00000364385 104 ntBASIC-1.81□□□□□ -2.7
USF3Q68DE3 RNU6-608P-201ENST00000383927 104 ntBASIC-1.81□□□□□ -2.7
USF3Q68DE3 Y_RNA.584-201ENST00000391090 114 ntBASIC-1.81□□□□□ -2.7
USF3Q68DE3 RNU6-264P-201ENST00000517134 104 ntBASIC-1.81□□□□□ -2.7
USF3Q68DE3 MIR548W-201ENST00000581970 74 ntBASIC-1.81□□□□□ -2.7
USF3Q68DE3 Y_RNA.772-201ENST00000606692 102 ntBASIC-1.81□□□□□ -2.7
USF3Q68DE3 Y_RNA.157-201ENST00000363638 102 ntBASIC-1.82□□□□□ -2.7
USF3Q68DE3 Y_RNA.519-201ENST00000384553 102 ntBASIC-1.82□□□□□ -2.7
USF3Q68DE3 RNU6-510P-201ENST00000391239 108 ntBASIC-1.82□□□□□ -2.7
USF3Q68DE3 RNU6-630P-201ENST00000391258 106 ntBASIC-1.82□□□□□ -2.7
USF3Q68DE3 RNU6-1121P-201ENST00000516802 109 ntBASIC-1.82□□□□□ -2.7
USF3Q68DE3 Y_RNA.521-201ENST00000384560 114 ntBASIC-1.82□□□□□ -2.7
USF3Q68DE3 Y_RNA.527-201ENST00000384573 102 ntBASIC-1.82□□□□□ -2.7
USF3Q68DE3 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC-1.82□□□□□ -2.7
USF3Q68DE3 AC082651.2-201ENST00000496833 166 ntBASIC-1.82□□□□□ -2.7
USF3Q68DE3 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-1.82□□□□□ -2.7
USF3Q68DE3 UBE2WP1-201ENST00000362030 340 ntBASIC-1.83□□□□□ -2.7
USF3Q68DE3 Y_RNA.80-201ENST00000362996 102 ntBASIC-1.83□□□□□ -2.7
USF3Q68DE3 Y_RNA.152-201ENST00000363578 100 ntBASIC-1.83□□□□□ -2.7
USF3Q68DE3 Y_RNA.569-201ENST00000384749 103 ntBASIC-1.83□□□□□ -2.7
USF3Q68DE3 RNU6-101P-201ENST00000410323 104 ntBASIC-1.83□□□□□ -2.7
USF3Q68DE3 SNORD11.1-201ENST00000459482 85 ntBASIC-1.83□□□□□ -2.7
USF3Q68DE3 AC037487.3-201ENST00000606668 112 ntBASIC-1.83□□□□□ -2.7
USF3Q68DE3 AL365265.1-201ENST00000621045 234 ntBASIC-1.83□□□□□ -2.7
USF3Q68DE3 Y_RNA.188-201ENST00000363952 111 ntBASIC-1.83□□□□□ -2.7
USF3Q68DE3 Y_RNA.599-201ENST00000410489 109 ntBASIC-1.84□□□□□ -2.7
USF3Q68DE3 RNU6-130P-201ENST00000411112 103 ntBASIC-1.84□□□□□ -2.7
USF3Q68DE3 RN7SKP298-201ENST00000515950 94 ntBASIC-1.84□□□□□ -2.7
USF3Q68DE3 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-1.84□□□□□ -2.7
USF3Q68DE3 Y_RNA.186-201ENST00000363899 92 ntBASIC-1.85□□□□□ -2.7
USF3Q68DE3 Y_RNA.463-201ENST00000384271 102 ntBASIC-1.85□□□□□ -2.7
USF3Q68DE3 Y_RNA.526-201ENST00000384572 110 ntBASIC-1.85□□□□□ -2.7
USF3Q68DE3 RNU4-43P-201ENST00000410628 137 ntBASIC-1.85□□□□□ -2.7
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms