Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNU6-811P-201ENST00000384069 107 ntBASIC1.35□□□□□ -2.19
LIG3P49916 MIR618-201ENST00000385287 98 ntBASIC1.35□□□□□ -2.19
LIG3P49916 RNU6-321P-201ENST00000410912 106 ntBASIC1.35□□□□□ -2.19
LIG3P49916 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.35□□□□□ -2.19
LIG3P49916 RNU6-75P-201ENST00000515944 104 ntBASIC1.35□□□□□ -2.19
LIG3P49916 RNU6-573P-201ENST00000383938 106 ntBASIC1.34□□□□□ -2.19
LIG3P49916 MIR548U-201ENST00000390728 81 ntBASIC1.34□□□□□ -2.19
LIG3P49916 RNU1-123P-201ENST00000458950 160 ntBASIC1.34□□□□□ -2.19
LIG3P49916 AC002350.1-201ENST00000490759 375 ntBASIC1.34□□□□□ -2.19
LIG3P49916 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.33□□□□□ -2.2
LIG3P49916 TRMT112P2-201ENST00000512910 132 ntBASIC1.33□□□□□ -2.2
LIG3P49916 AL353770.2-201ENST00000620024 78 ntBASIC1.33□□□□□ -2.2
LIG3P49916 AC006160.2-201ENST00000637708 154 ntBASIC1.33□□□□□ -2.2
LIG3P49916 Y_RNA.219-201ENST00000364232 113 ntBASIC1.32□□□□□ -2.2
LIG3P49916 Y_RNA.327-201ENST00000365201 102 ntBASIC1.32□□□□□ -2.2
LIG3P49916 RNU7-171P-201ENST00000459581 62 ntBASIC1.32□□□□□ -2.2
LIG3P49916 AC093729.1-201ENST00000513074 128 ntBASIC1.32□□□□□ -2.2
LIG3P49916 RNA5SP255-201ENST00000516370 107 ntBASIC1.32□□□□□ -2.2
LIG3P49916 Y_RNA.508-201ENST00000384502 114 ntBASIC1.31□□□□□ -2.2
LIG3P49916 AC004223.1-201ENST00000479840 271 ntBASIC1.31□□□□□ -2.2
LIG3P49916 RNU6-469P-201ENST00000516253 101 ntBASIC1.31□□□□□ -2.2
LIG3P49916 RNU6-135P-201ENST00000516769 101 ntBASIC1.31□□□□□ -2.2
LIG3P49916 AC104996.3-201ENST00000590718 94 ntBASIC1.31□□□□□ -2.2
LIG3P49916 MIR3202-2-201ENST00000635980 79 ntBASIC1.31□□□□□ -2.2
LIG3P49916 MIR1245B-201ENST00000636115 69 ntBASIC1.31□□□□□ -2.2
LIG3P49916 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.31□□□□□ -2.2
LIG3P49916 Y_RNA.221-201ENST00000364248 96 ntBASIC1.3□□□□□ -2.2
LIG3P49916 Y_RNA.226-201ENST00000364337 114 ntBASIC1.3□□□□□ -2.2
LIG3P49916 MIR573-201ENST00000384964 99 ntBASIC1.3□□□□□ -2.2
LIG3P49916 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
LIG3P49916 Y_RNA.607-201ENST00000410597 98 ntBASIC1.3□□□□□ -2.2
LIG3P49916 AL606490.4-201ENST00000423117 127 ntBASIC1.3□□□□□ -2.2
LIG3P49916 RNU6-1265P-201ENST00000516342 103 ntBASIC1.3□□□□□ -2.2
LIG3P49916 MIR3064-201ENST00000581130 66 ntBASIC1.3□□□□□ -2.2
LIG3P49916 RNU6-1335P-201ENST00000365426 107 ntBASIC1.29□□□□□ -2.2
LIG3P49916 SNORA40.6-201ENST00000391153 128 ntBASIC1.29□□□□□ -2.2
LIG3P49916 MIR1285-1-201ENST00000408593 84 ntBASIC1.29□□□□□ -2.2
LIG3P49916 MIR3660-201ENST00000584845 100 ntBASIC1.29□□□□□ -2.2
LIG3P49916 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
LIG3P49916 MIRLET7F1-201ENST00000362202 87 ntBASIC1.28□□□□□ -2.2
LIG3P49916 SNORD115-24-201ENST00000363528 82 ntBASIC1.28□□□□□ -2.2
LIG3P49916 RNU6-132P-201ENST00000383863 107 ntBASIC1.28□□□□□ -2.2
LIG3P49916 MIR1287-201ENST00000408492 90 ntBASIC1.28□□□□□ -2.2
LIG3P49916 Y_RNA.596-201ENST00000410462 109 ntBASIC1.28□□□□□ -2.2
LIG3P49916 MIR4796-201ENST00000580742 81 ntBASIC1.28□□□□□ -2.2
LIG3P49916 U6.100-201ENST00000636230 99 ntBASIC1.28□□□□□ -2.2
LIG3P49916 SNORD101-201ENST00000384027 73 ntBASIC1.27□□□□□ -2.21
LIG3P49916 Y_RNA.491-201ENST00000384417 107 ntBASIC1.27□□□□□ -2.21
LIG3P49916 RNU6-939P-201ENST00000384634 107 ntBASIC1.27□□□□□ -2.21
LIG3P49916 MIR518E-201ENST00000385252 88 ntBASIC1.27□□□□□ -2.21
LIG3P49916 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.27□□□□□ -2.21
LIG3P49916 RNU7-153P-201ENST00000516455 62 ntBASIC1.27□□□□□ -2.21
LIG3P49916 Y_RNA.239-201ENST00000364444 113 ntBASIC1.26□□□□□ -2.21
LIG3P49916 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
LIG3P49916 RNA5SP292-201ENST00000390974 118 ntBASIC1.26□□□□□ -2.21
LIG3P49916 MIR3612-201ENST00000579753 87 ntBASIC1.26□□□□□ -2.21
LIG3P49916 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.26□□□□□ -2.21
LIG3P49916 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.26□□□□□ -2.21
LIG3P49916 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.25□□□□□ -2.21
LIG3P49916 RNU6-664P-201ENST00000362381 107 ntBASIC1.25□□□□□ -2.21
LIG3P49916 RNU6-392P-201ENST00000364926 101 ntBASIC1.25□□□□□ -2.21
LIG3P49916 SNORA25.9-201ENST00000365087 128 ntBASIC1.25□□□□□ -2.21
LIG3P49916 MIR644A-201ENST00000385262 94 ntBASIC1.25□□□□□ -2.21
LIG3P49916 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
LIG3P49916 SNORA18.5-201ENST00000516616 101 ntBASIC1.25□□□□□ -2.21
LIG3P49916 MIR4666B-201ENST00000578142 81 ntBASIC1.25□□□□□ -2.21
LIG3P49916 MIR6078-201ENST00000611069 100 ntBASIC1.25□□□□□ -2.21
LIG3P49916 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
LIG3P49916 Y_RNA.437-201ENST00000384113 113 ntBASIC1.24□□□□□ -2.21
LIG3P49916 MIR499A-201ENST00000384903 122 ntBASIC1.24□□□□□ -2.21
LIG3P49916 SNORD78.1-201ENST00000390866 65 ntBASIC1.24□□□□□ -2.21
LIG3P49916 SNORA25.13-201ENST00000516395 103 ntBASIC1.24□□□□□ -2.21
LIG3P49916 AC140658.3-201ENST00000567603 271 ntBASIC1.24□□□□□ -2.21
LIG3P49916 MIR4696-201ENST00000581431 70 ntBASIC1.24□□□□□ -2.21
LIG3P49916 MTRNR2L2-201ENST00000604882 87 ntBASIC1.24□□□□□ -2.21
LIG3P49916 MIR8070-201ENST00000616510 88 ntBASIC1.24□□□□□ -2.21
LIG3P49916 RNA5SP403-201ENST00000363598 108 ntBASIC1.23□□□□□ -2.21
LIG3P49916 RNU6-1229P-201ENST00000364295 107 ntBASIC1.23□□□□□ -2.21
LIG3P49916 SNORD115-44-201ENST00000365391 82 ntBASIC1.23□□□□□ -2.21
LIG3P49916 SNORD99-201ENST00000408612 74 ntBASIC1.23□□□□□ -2.21
LIG3P49916 RNU7-13P-201ENST00000516413 62 ntBASIC1.23□□□□□ -2.21
LIG3P49916 AC011195.1-201ENST00000578177 177 ntBASIC1.23□□□□□ -2.21
LIG3P49916 MIR4639-201ENST00000584938 69 ntBASIC1.23□□□□□ -2.21
LIG3P49916 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.23□□□□□ -2.21
LIG3P49916 RNU6-1124P-201ENST00000384169 107 ntBASIC1.22□□□□□ -2.21
LIG3P49916 RNU7-104P-201ENST00000459398 79 ntBASIC1.22□□□□□ -2.21
LIG3P49916 RNU7-161P-201ENST00000517289 62 ntBASIC1.22□□□□□ -2.21
LIG3P49916 MIR4661-201ENST00000582720 75 ntBASIC1.21□□□□□ -2.22
LIG3P49916 RNU6-228P-201ENST00000362700 106 ntBASIC1.2□□□□□ -2.22
LIG3P49916 RNU6-935P-201ENST00000410371 100 ntBASIC1.2□□□□□ -2.22
LIG3P49916 MIR3678-201ENST00000578455 94 ntBASIC1.2□□□□□ -2.22
LIG3P49916 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
LIG3P49916 SNORD18A-201ENST00000363753 72 ntBASIC1.19□□□□□ -2.22
LIG3P49916 Y_RNA.316-201ENST00000365118 111 ntBASIC1.19□□□□□ -2.22
LIG3P49916 RNU4-45P-201ENST00000365469 141 ntBASIC1.19□□□□□ -2.22
LIG3P49916 RNU6-787P-201ENST00000384032 107 ntBASIC1.19□□□□□ -2.22
LIG3P49916 SNORD28-201ENST00000384706 75 ntBASIC1.19□□□□□ -2.22
LIG3P49916 AC244098.3-201ENST00000424803 96 ntBASIC1.19□□□□□ -2.22
LIG3P49916 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.19□□□□□ -2.22
LIG3P49916 AC244669.1-204ENST00000621564 178 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 238.4 ms