Protein–RNA interactions for Protein: P35625

TIMP3, Metalloproteinase inhibitor 3, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP3P35625 RNU7-106P-201ENST00000459514 67 ntBASIC0.68□□□□□ -2.3
TIMP3P35625 MIR3612-201ENST00000579753 87 ntBASIC0.68□□□□□ -2.3
TIMP3P35625 AL353765.1-201ENST00000605514 183 ntBASIC0.68□□□□□ -2.3
TIMP3P35625 MIR6835-201ENST00000621552 64 ntBASIC0.68□□□□□ -2.3
TIMP3P35625 Y_RNA.32-201ENST00000362589 110 ntBASIC0.67□□□□□ -2.3
TIMP3P35625 RNU6-640P-201ENST00000363693 105 ntBASIC0.67□□□□□ -2.3
TIMP3P35625 RNU6-243P-201ENST00000391140 107 ntBASIC0.67□□□□□ -2.3
TIMP3P35625 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.67□□□□□ -2.3
TIMP3P35625 AC244098.3-201ENST00000424803 96 ntBASIC0.67□□□□□ -2.3
TIMP3P35625 RNU7-195P-201ENST00000458793 62 ntBASIC0.67□□□□□ -2.3
TIMP3P35625 RNA5SP480-201ENST00000516840 109 ntBASIC0.67□□□□□ -2.3
TIMP3P35625 MIR7-2-201ENST00000384970 110 ntBASIC0.66□□□□□ -2.3
TIMP3P35625 MIR519A1-201ENST00000385257 85 ntBASIC0.66□□□□□ -2.3
TIMP3P35625 Y_RNA.809-201ENST00000516058 95 ntBASIC0.66□□□□□ -2.3
TIMP3P35625 RNU6-162P-201ENST00000516228 103 ntBASIC0.66□□□□□ -2.3
TIMP3P35625 RNU6-469P-201ENST00000516253 101 ntBASIC0.66□□□□□ -2.3
TIMP3P35625 AL513043.2-201ENST00000573941 143 ntBASIC0.66□□□□□ -2.3
TIMP3P35625 MIR4714-201ENST00000580728 77 ntBASIC0.66□□□□□ -2.3
TIMP3P35625 U7.3-201ENST00000616123 62 ntBASIC0.66□□□□□ -2.3
TIMP3P35625 AC025521.1-201ENST00000621624 286 ntBASIC0.66□□□□□ -2.3
TIMP3P35625 SNORD36A-201ENST00000362874 73 ntBASIC0.65□□□□□ -2.31
TIMP3P35625 SNORD58A-201ENST00000383875 65 ntBASIC0.65□□□□□ -2.31
TIMP3P35625 MIR608-201ENST00000384820 100 ntBASIC0.65□□□□□ -2.31
TIMP3P35625 MIR599-201ENST00000385069 95 ntBASIC0.65□□□□□ -2.31
TIMP3P35625 MIR644A-201ENST00000385262 94 ntBASIC0.65□□□□□ -2.31
TIMP3P35625 AC097635.1-201ENST00000450678 155 ntBASIC0.65□□□□□ -2.31
TIMP3P35625 PVT1_3.1-201ENST00000620853 95 ntBASIC0.65□□□□□ -2.31
TIMP3P35625 RNY4P30-201ENST00000410216 95 ntBASIC0.64□□□□□ -2.31
TIMP3P35625 RNA5SP222-201ENST00000411039 105 ntBASIC0.64□□□□□ -2.31
TIMP3P35625 AC244505.6-201ENST00000452829 130 ntBASIC0.64□□□□□ -2.31
TIMP3P35625 Y_RNA.694-201ENST00000516677 117 ntBASIC0.64□□□□□ -2.31
TIMP3P35625 RNU6-135P-201ENST00000516769 101 ntBASIC0.64□□□□□ -2.31
TIMP3P35625 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.64□□□□□ -2.31
TIMP3P35625 MIR3678-201ENST00000578455 94 ntBASIC0.64□□□□□ -2.31
TIMP3P35625 AL590095.2-201ENST00000604136 117 ntBASIC0.64□□□□□ -2.31
TIMP3P35625 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.64□□□□□ -2.31
TIMP3P35625 MALAT1.1-201ENST00000618249 95 ntBASIC0.64□□□□□ -2.31
TIMP3P35625 MIR18A-201ENST00000362310 71 ntBASIC0.63□□□□□ -2.31
TIMP3P35625 RNU6-1260P-201ENST00000362944 107 ntBASIC0.63□□□□□ -2.31
TIMP3P35625 SNORD114-26-201ENST00000363543 72 ntBASIC0.63□□□□□ -2.31
TIMP3P35625 SNORD116-10-201ENST00000363791 102 ntBASIC0.63□□□□□ -2.31
TIMP3P35625 Y_RNA.290-201ENST00000364879 114 ntBASIC0.63□□□□□ -2.31
TIMP3P35625 RNU4-45P-201ENST00000365469 141 ntBASIC0.63□□□□□ -2.31
TIMP3P35625 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.63□□□□□ -2.31
TIMP3P35625 SNORD115-24-201ENST00000363528 82 ntBASIC0.62□□□□□ -2.31
TIMP3P35625 Y_RNA.220-201ENST00000364244 109 ntBASIC0.62□□□□□ -2.31
TIMP3P35625 Y_RNA.221-201ENST00000364248 96 ntBASIC0.62□□□□□ -2.31
TIMP3P35625 MIR508-201ENST00000384857 115 ntBASIC0.62□□□□□ -2.31
TIMP3P35625 Y_RNA.36-201ENST00000362602 112 ntBASIC0.61□□□□□ -2.31
TIMP3P35625 Y_RNA.190-201ENST00000363964 101 ntBASIC0.61□□□□□ -2.31
TIMP3P35625 MIR488-201ENST00000365739 83 ntBASIC0.61□□□□□ -2.31
TIMP3P35625 RNU6-524P-201ENST00000384270 107 ntBASIC0.61□□□□□ -2.31
TIMP3P35625 Y_RNA.648-201ENST00000459455 110 ntBASIC0.61□□□□□ -2.31
TIMP3P35625 RNA5SP436-201ENST00000516020 115 ntBASIC0.61□□□□□ -2.31
TIMP3P35625 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.61□□□□□ -2.31
TIMP3P35625 MIR6513-201ENST00000621188 64 ntBASIC0.61□□□□□ -2.31
TIMP3P35625 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.61□□□□□ -2.31
TIMP3P35625 SNORD18A-201ENST00000363753 72 ntBASIC0.6□□□□□ -2.31
TIMP3P35625 RNU6-1229P-201ENST00000364295 107 ntBASIC0.6□□□□□ -2.31
TIMP3P35625 RNU6-466P-201ENST00000391224 103 ntBASIC0.6□□□□□ -2.31
TIMP3P35625 snoU13.11-201ENST00000459219 104 ntBASIC0.6□□□□□ -2.31
TIMP3P35625 RNA5SP170-201ENST00000517150 101 ntBASIC0.6□□□□□ -2.31
TIMP3P35625 MIR4639-201ENST00000584938 69 ntBASIC0.6□□□□□ -2.31
TIMP3P35625 RNU6-957P-201ENST00000363652 99 ntBASIC0.59□□□□□ -2.31
TIMP3P35625 RNU6-1131P-201ENST00000364955 107 ntBASIC0.59□□□□□ -2.31
TIMP3P35625 SNORA36.2-201ENST00000384004 127 ntBASIC0.59□□□□□ -2.31
TIMP3P35625 SNORD28-201ENST00000384706 75 ntBASIC0.59□□□□□ -2.31
TIMP3P35625 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.59□□□□□ -2.31
TIMP3P35625 RNU6-110P-201ENST00000384508 104 ntBASIC0.58□□□□□ -2.32
TIMP3P35625 RNY1P7-201ENST00000384743 110 ntBASIC0.58□□□□□ -2.32
TIMP3P35625 RNU6-519P-201ENST00000410590 108 ntBASIC0.58□□□□□ -2.32
TIMP3P35625 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.58□□□□□ -2.32
TIMP3P35625 AL161932.1-201ENST00000437408 146 ntBASIC0.58□□□□□ -2.32
TIMP3P35625 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.58□□□□□ -2.32
TIMP3P35625 AC244669.1-204ENST00000621564 178 ntBASIC0.58□□□□□ -2.32
TIMP3P35625 TRDV1-202ENST00000621643 102 ntBASIC0.58□□□□□ -2.32
TIMP3P35625 RNU6-1298P-201ENST00000362456 101 ntBASIC0.57□□□□□ -2.32
TIMP3P35625 Y_RNA.283-201ENST00000364798 112 ntBASIC0.57□□□□□ -2.32
TIMP3P35625 RNU6-49P-201ENST00000384256 107 ntBASIC0.57□□□□□ -2.32
TIMP3P35625 Y_RNA.609-201ENST00000410669 89 ntBASIC0.57□□□□□ -2.32
TIMP3P35625 RNU7-104P-201ENST00000459398 79 ntBASIC0.57□□□□□ -2.32
TIMP3P35625 RNU6-65P-201ENST00000516332 98 ntBASIC0.57□□□□□ -2.32
TIMP3P35625 RNA5SP47-201ENST00000517230 109 ntBASIC0.57□□□□□ -2.32
TIMP3P35625 RNU7-161P-201ENST00000517289 62 ntBASIC0.57□□□□□ -2.32
TIMP3P35625 MIR5582-201ENST00000579697 68 ntBASIC0.57□□□□□ -2.32
TIMP3P35625 MIR4536-1-201ENST00000583537 88 ntBASIC0.57□□□□□ -2.32
TIMP3P35625 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.57□□□□□ -2.32
TIMP3P35625 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.56□□□□□ -2.32
TIMP3P35625 RNA5SP347-201ENST00000362445 119 ntBASIC0.56□□□□□ -2.32
TIMP3P35625 RNA5SP403-201ENST00000363598 108 ntBASIC0.56□□□□□ -2.32
TIMP3P35625 RNY1P8-201ENST00000383970 114 ntBASIC0.56□□□□□ -2.32
TIMP3P35625 MIR140-201ENST00000385282 100 ntBASIC0.56□□□□□ -2.32
TIMP3P35625 RNU7-85P-201ENST00000458851 63 ntBASIC0.56□□□□□ -2.32
TIMP3P35625 RNA5SP94-201ENST00000516917 108 ntBASIC0.56□□□□□ -2.32
TIMP3P35625 AC026421.1-201ENST00000519101 163 ntBASIC0.56□□□□□ -2.32
TIMP3P35625 MIR6779-201ENST00000617283 64 ntBASIC0.56□□□□□ -2.32
TIMP3P35625 AC067863.3-201ENST00000624172 122 ntBASIC0.56□□□□□ -2.32
TIMP3P35625 Y_RNA.369-201ENST00000365568 117 ntBASIC0.55□□□□□ -2.32
TIMP3P35625 MIR216A-201ENST00000385063 110 ntBASIC0.55□□□□□ -2.32
TIMP3P35625 MIR936-201ENST00000401264 98 ntBASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 546.4 ms