Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 MIR9-2-201ENST00000384838 87 ntBASIC-0.44□□□□□ -2.48
SHMT2P34897 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.44□□□□□ -2.48
SHMT2P34897 RNU6-287P-201ENST00000516230 98 ntBASIC-0.44□□□□□ -2.48
SHMT2P34897 Y_RNA.692-201ENST00000516627 105 ntBASIC-0.44□□□□□ -2.48
SHMT2P34897 RNU6-1006P-201ENST00000516998 103 ntBASIC-0.44□□□□□ -2.48
SHMT2P34897 AC145423.2-201ENST00000610631 239 ntBASIC-0.44□□□□□ -2.48
SHMT2P34897 Y_RNA.144-201ENST00000363521 113 ntBASIC-0.45□□□□□ -2.48
SHMT2P34897 Y_RNA.213-201ENST00000364178 111 ntBASIC-0.45□□□□□ -2.48
SHMT2P34897 SNORA49-201ENST00000386157 136 ntBASIC-0.45□□□□□ -2.48
SHMT2P34897 RNU6-735P-201ENST00000410612 107 ntBASIC-0.45□□□□□ -2.48
SHMT2P34897 RNA5SP169-201ENST00000517268 117 ntBASIC-0.45□□□□□ -2.48
SHMT2P34897 MIR4432-201ENST00000581823 84 ntBASIC-0.45□□□□□ -2.48
SHMT2P34897 Y_RNA.778-201ENST00000620203 90 ntBASIC-0.45□□□□□ -2.48
SHMT2P34897 TRDV1-202ENST00000621643 102 ntBASIC-0.45□□□□□ -2.48
SHMT2P34897 uc_338.10-201ENST00000621872 182 ntBASIC-0.45□□□□□ -2.48
SHMT2P34897 U6.100-201ENST00000636230 99 ntBASIC-0.45□□□□□ -2.48
SHMT2P34897 Y_RNA.114-201ENST00000363265 113 ntBASIC-0.46□□□□□ -2.48
SHMT2P34897 SNORD114-28-201ENST00000363610 72 ntBASIC-0.46□□□□□ -2.48
SHMT2P34897 Y_RNA.198-201ENST00000364013 98 ntBASIC-0.46□□□□□ -2.48
SHMT2P34897 RNU6-151P-201ENST00000364158 107 ntBASIC-0.46□□□□□ -2.48
SHMT2P34897 RNU6-1163P-201ENST00000364516 107 ntBASIC-0.46□□□□□ -2.48
SHMT2P34897 RNU6-200P-201ENST00000364743 107 ntBASIC-0.46□□□□□ -2.48
SHMT2P34897 Y_RNA.401-201ENST00000383965 117 ntBASIC-0.46□□□□□ -2.48
SHMT2P34897 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.46□□□□□ -2.48
SHMT2P34897 MT-TY-201ENST00000387409 66 ntBASIC-0.46□□□□□ -2.48
SHMT2P34897 RNU6-1254P-201ENST00000391266 104 ntBASIC-0.46□□□□□ -2.48
SHMT2P34897 RNU6-284P-201ENST00000411105 106 ntBASIC-0.46□□□□□ -2.48
SHMT2P34897 RNU6-138P-201ENST00000515952 107 ntBASIC-0.46□□□□□ -2.48
SHMT2P34897 RN7SKP19-201ENST00000516016 252 ntBASIC-0.46□□□□□ -2.48
SHMT2P34897 SNORD36A-201ENST00000362874 73 ntBASIC-0.47□□□□□ -2.48
SHMT2P34897 RNA5SP98-201ENST00000363158 137 ntBASIC-0.47□□□□□ -2.48
SHMT2P34897 RNU6-154P-201ENST00000384306 106 ntBASIC-0.47□□□□□ -2.48
SHMT2P34897 RNU6-480P-201ENST00000384332 107 ntBASIC-0.47□□□□□ -2.48
SHMT2P34897 AC114755.3-201ENST00000481111 251 ntBASIC-0.47□□□□□ -2.48
SHMT2P34897 AC074198.2-201ENST00000508153 258 ntBASIC-0.47□□□□□ -2.48
SHMT2P34897 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-0.47□□□□□ -2.48
SHMT2P34897 MIR4460-201ENST00000577862 86 ntBASIC-0.47□□□□□ -2.48
SHMT2P34897 MIR4436A-201ENST00000585278 85 ntBASIC-0.47□□□□□ -2.48
SHMT2P34897 MTRNR2L2-201ENST00000604882 87 ntBASIC-0.47□□□□□ -2.48
SHMT2P34897 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.47□□□□□ -2.49
SHMT2P34897 RNU6-1313P-201ENST00000362622 102 ntBASIC-0.48□□□□□ -2.49
SHMT2P34897 Y_RNA.57-201ENST00000362806 113 ntBASIC-0.48□□□□□ -2.49
SHMT2P34897 RNU6-379P-201ENST00000363813 104 ntBASIC-0.48□□□□□ -2.49
SHMT2P34897 RNU6-1130P-201ENST00000365434 107 ntBASIC-0.48□□□□□ -2.49
SHMT2P34897 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.48□□□□□ -2.49
SHMT2P34897 RNU6-455P-201ENST00000384681 107 ntBASIC-0.48□□□□□ -2.49
SHMT2P34897 SNORD56B-201ENST00000384713 71 ntBASIC-0.48□□□□□ -2.49
SHMT2P34897 SNORA7.5-201ENST00000410672 110 ntBASIC-0.48□□□□□ -2.49
SHMT2P34897 RNA5SP136-201ENST00000410906 107 ntBASIC-0.48□□□□□ -2.49
SHMT2P34897 AL353813.1-201ENST00000440700 253 ntBASIC-0.48□□□□□ -2.49
SHMT2P34897 Y_RNA.681-201ENST00000516445 113 ntBASIC-0.48□□□□□ -2.49
SHMT2P34897 MIR4263-201ENST00000584745 83 ntBASIC-0.48□□□□□ -2.49
SHMT2P34897 FTX_2.1-201ENST00000618816 94 ntBASIC-0.48□□□□□ -2.49
SHMT2P34897 AL391099.1-201ENST00000624635 187 ntBASIC-0.48□□□□□ -2.49
SHMT2P34897 Y_RNA.207-201ENST00000364142 106 ntBASIC-0.49□□□□□ -2.49
SHMT2P34897 RNU6-647P-201ENST00000364243 107 ntBASIC-0.49□□□□□ -2.49
SHMT2P34897 Y_RNA.247-201ENST00000364500 92 ntBASIC-0.49□□□□□ -2.49
SHMT2P34897 Y_RNA.294-201ENST00000364916 102 ntBASIC-0.49□□□□□ -2.49
SHMT2P34897 MIR548D2-201ENST00000384955 97 ntBASIC-0.49□□□□□ -2.49
SHMT2P34897 MIR652-201ENST00000385278 98 ntBASIC-0.49□□□□□ -2.49
SHMT2P34897 RNU6-243P-201ENST00000391140 107 ntBASIC-0.49□□□□□ -2.49
SHMT2P34897 AC007012.1-201ENST00000567192 175 ntBASIC-0.49□□□□□ -2.49
SHMT2P34897 MIR4280-201ENST00000582178 76 ntBASIC-0.49□□□□□ -2.49
SHMT2P34897 SNORD114-29-201ENST00000364819 70 ntBASIC-0.5□□□□□ -2.49
SHMT2P34897 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.5□□□□□ -2.49
SHMT2P34897 Y_RNA.580-201ENST00000391004 95 ntBASIC-0.5□□□□□ -2.49
SHMT2P34897 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-0.5□□□□□ -2.49
SHMT2P34897 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.5□□□□□ -2.49
SHMT2P34897 SPINT5P-201ENST00000448174 155 ntBASIC-0.5□□□□□ -2.49
SHMT2P34897 uc_338.36-201ENST00000622331 158 ntBASIC-0.5□□□□□ -2.49
SHMT2P34897 AP001340.1-201ENST00000624405 217 ntBASIC-0.5□□□□□ -2.49
SHMT2P34897 Y_RNA.29-201ENST00000362570 113 ntBASIC-0.51□□□□□ -2.49
SHMT2P34897 RNU6-957P-201ENST00000363652 99 ntBASIC-0.51□□□□□ -2.49
SHMT2P34897 SNORD38.1-201ENST00000363863 68 ntBASIC-0.51□□□□□ -2.49
SHMT2P34897 Y_RNA.188-201ENST00000363952 111 ntBASIC-0.51□□□□□ -2.49
SHMT2P34897 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.51□□□□□ -2.49
SHMT2P34897 SNORD116-18-201ENST00000383961 92 ntBASIC-0.51□□□□□ -2.49
SHMT2P34897 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.51□□□□□ -2.49
SHMT2P34897 MIR759-201ENST00000390224 91 ntBASIC-0.51□□□□□ -2.49
SHMT2P34897 MIR513C-201ENST00000401352 84 ntBASIC-0.51□□□□□ -2.49
SHMT2P34897 MIR1263-201ENST00000408324 86 ntBASIC-0.51□□□□□ -2.49
SHMT2P34897 MIR548G-201ENST00000408442 89 ntBASIC-0.51□□□□□ -2.49
SHMT2P34897 Y_RNA.596-201ENST00000410462 109 ntBASIC-0.51□□□□□ -2.49
SHMT2P34897 Y_RNA.700-201ENST00000516806 100 ntBASIC-0.51□□□□□ -2.49
SHMT2P34897 RNU6-1234P-201ENST00000516877 103 ntBASIC-0.51□□□□□ -2.49
SHMT2P34897 RNU6-1271P-201ENST00000517049 105 ntBASIC-0.51□□□□□ -2.49
SHMT2P34897 RNA5SP66-201ENST00000517178 101 ntBASIC-0.51□□□□□ -2.49
SHMT2P34897 AP001328.1-201ENST00000528550 176 ntBASIC-0.51□□□□□ -2.49
SHMT2P34897 MIR548AZ-201ENST00000616567 95 ntBASIC-0.51□□□□□ -2.49
SHMT2P34897 RNU6-363P-201ENST00000362895 105 ntBASIC-0.52□□□□□ -2.49
SHMT2P34897 Y_RNA.173-201ENST00000363776 113 ntBASIC-0.52□□□□□ -2.49
SHMT2P34897 Y_RNA.215-201ENST00000364204 112 ntBASIC-0.52□□□□□ -2.49
SHMT2P34897 SNORA32.3-201ENST00000384772 121 ntBASIC-0.52□□□□□ -2.49
SHMT2P34897 RNU6-388P-201ENST00000517012 105 ntBASIC-0.52□□□□□ -2.49
SHMT2P34897 RNU6-389P-201ENST00000517048 105 ntBASIC-0.52□□□□□ -2.49
SHMT2P34897 MIR4719-201ENST00000585233 84 ntBASIC-0.52□□□□□ -2.49
SHMT2P34897 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-0.52□□□□□ -2.49
SHMT2P34897 AL512310.12-203ENST00000640543 90 ntBASIC-0.52□□□□□ -2.49
SHMT2P34897 RNU6-235P-201ENST00000362644 107 ntBASIC-0.53□□□□□ -2.49
SHMT2P34897 MIR582-201ENST00000365731 98 ntBASIC-0.53□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 171.5 ms