Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AL442128.1-201ENST00000615151 90 ntBASIC0.29□□□□□ -2.36
HOXC9P31274 Y_RNA.57-201ENST00000362806 113 ntBASIC0.28□□□□□ -2.36
HOXC9P31274 RNU6-1126P-201ENST00000384002 107 ntBASIC0.28□□□□□ -2.36
HOXC9P31274 MIR519A1-201ENST00000385257 85 ntBASIC0.28□□□□□ -2.36
HOXC9P31274 RNU7-129P-201ENST00000516128 62 ntBASIC0.28□□□□□ -2.36
HOXC9P31274 MIR4679-2-201ENST00000578358 77 ntBASIC0.28□□□□□ -2.36
HOXC9P31274 MIR6755-201ENST00000619993 66 ntBASIC0.28□□□□□ -2.36
HOXC9P31274 RNU6-1327P-201ENST00000365302 105 ntBASIC0.27□□□□□ -2.37
HOXC9P31274 RNU6-815P-201ENST00000384080 113 ntBASIC0.27□□□□□ -2.37
HOXC9P31274 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.27□□□□□ -2.37
HOXC9P31274 RNU6-863P-201ENST00000515989 104 ntBASIC0.27□□□□□ -2.37
HOXC9P31274 RNU6-1260P-201ENST00000362944 107 ntBASIC0.26□□□□□ -2.37
HOXC9P31274 Y_RNA.353-201ENST00000365440 108 ntBASIC0.26□□□□□ -2.37
HOXC9P31274 MIR577-201ENST00000385196 96 ntBASIC0.26□□□□□ -2.37
HOXC9P31274 AC008267.6-201ENST00000441664 139 ntBASIC0.26□□□□□ -2.37
HOXC9P31274 AC068339.1-201ENST00000526965 141 ntBASIC0.26□□□□□ -2.37
HOXC9P31274 AC096720.1-201ENST00000604441 183 ntBASIC0.26□□□□□ -2.37
HOXC9P31274 AL365222.1-201ENST00000614661 98 ntBASIC0.26□□□□□ -2.37
HOXC9P31274 U8.6-201ENST00000364939 135 ntBASIC0.25□□□□□ -2.37
HOXC9P31274 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.25□□□□□ -2.37
HOXC9P31274 MIR760-201ENST00000390220 80 ntBASIC0.25□□□□□ -2.37
HOXC9P31274 AC108740.1-201ENST00000498629 225 ntBASIC0.25□□□□□ -2.37
HOXC9P31274 RNU7-13P-201ENST00000516413 62 ntBASIC0.25□□□□□ -2.37
HOXC9P31274 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.25□□□□□ -2.37
HOXC9P31274 Y_RNA.173-201ENST00000363776 113 ntBASIC0.24□□□□□ -2.37
HOXC9P31274 RNU6-81P-201ENST00000365608 104 ntBASIC0.24□□□□□ -2.37
HOXC9P31274 RNU6-243P-201ENST00000391140 107 ntBASIC0.24□□□□□ -2.37
HOXC9P31274 RNU6-1254P-201ENST00000391266 104 ntBASIC0.24□□□□□ -2.37
HOXC9P31274 Y_RNA.659-201ENST00000515994 113 ntBASIC0.24□□□□□ -2.37
HOXC9P31274 MIR4694-201ENST00000578534 80 ntBASIC0.24□□□□□ -2.37
HOXC9P31274 Y_RNA.323-201ENST00000365157 109 ntBASIC0.23□□□□□ -2.37
HOXC9P31274 SNORD116-21-201ENST00000384507 92 ntBASIC0.23□□□□□ -2.37
HOXC9P31274 RNU6-269P-201ENST00000391077 97 ntBASIC0.23□□□□□ -2.37
HOXC9P31274 AC069113.3-201ENST00000521019 150 ntBASIC0.23□□□□□ -2.37
HOXC9P31274 MIR5009-201ENST00000578736 100 ntBASIC0.23□□□□□ -2.37
HOXC9P31274 Y_RNA.377-201ENST00000365644 108 ntBASIC0.22□□□□□ -2.37
HOXC9P31274 SNORA2A-201ENST00000383885 135 ntBASIC0.22□□□□□ -2.37
HOXC9P31274 RNU6-880P-201ENST00000384526 107 ntBASIC0.22□□□□□ -2.37
HOXC9P31274 SNORD41.1-201ENST00000391000 69 ntBASIC0.22□□□□□ -2.37
HOXC9P31274 AL161932.1-201ENST00000437408 146 ntBASIC0.22□□□□□ -2.37
HOXC9P31274 AL162376.1-201ENST00000624117 175 ntBASIC0.22□□□□□ -2.37
HOXC9P31274 SNORA9.1-201ENST00000362412 131 ntBASIC0.21□□□□□ -2.38
HOXC9P31274 RNY3P2-201ENST00000362918 102 ntBASIC0.21□□□□□ -2.38
HOXC9P31274 RNU6-832P-201ENST00000363319 107 ntBASIC0.21□□□□□ -2.38
HOXC9P31274 MIR3910-1-201ENST00000580936 111 ntBASIC0.21□□□□□ -2.38
HOXC9P31274 MIR3920-201ENST00000581751 86 ntBASIC0.21□□□□□ -2.38
HOXC9P31274 MIR5093-201ENST00000583199 100 ntBASIC0.21□□□□□ -2.38
HOXC9P31274 SNORA70.25-201ENST00000612741 95 ntBASIC0.21□□□□□ -2.38
HOXC9P31274 SNORD36A-201ENST00000362874 73 ntBASIC0.2□□□□□ -2.38
HOXC9P31274 AL603908.1-201ENST00000406098 201 ntBASIC0.2□□□□□ -2.38
HOXC9P31274 RNU6-1232P-201ENST00000516299 86 ntBASIC0.2□□□□□ -2.38
HOXC9P31274 RNU6-1265P-201ENST00000516342 103 ntBASIC0.2□□□□□ -2.38
HOXC9P31274 AC141557.1-201ENST00000540982 400 ntBASIC0.2□□□□□ -2.38
HOXC9P31274 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.2□□□□□ -2.38
HOXC9P31274 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.2□□□□□ -2.38
HOXC9P31274 Y_RNA.163-201ENST00000363702 113 ntBASIC0.19□□□□□ -2.38
HOXC9P31274 RNU6-1163P-201ENST00000364516 107 ntBASIC0.19□□□□□ -2.38
HOXC9P31274 Y_RNA.281-201ENST00000364774 94 ntBASIC0.19□□□□□ -2.38
HOXC9P31274 Y_RNA.563-201ENST00000384707 108 ntBASIC0.19□□□□□ -2.38
HOXC9P31274 RNU1-29P-201ENST00000606574 126 ntBASIC0.19□□□□□ -2.38
HOXC9P31274 TRDV1-202ENST00000621643 102 ntBASIC0.19□□□□□ -2.38
HOXC9P31274 AC132825.6-201ENST00000638861 357 ntBASIC0.19□□□□□ -2.38
HOXC9P31274 RNA5SP128-201ENST00000365305 116 ntBASIC0.18□□□□□ -2.38
HOXC9P31274 RNU6-1117P-201ENST00000384525 104 ntBASIC0.18□□□□□ -2.38
HOXC9P31274 MIR181B2-201ENST00000385004 89 ntBASIC0.18□□□□□ -2.38
HOXC9P31274 AC109327.2-201ENST00000448339 378 ntBASIC0.18□□□□□ -2.38
HOXC9P31274 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.18□□□□□ -2.38
HOXC9P31274 RNU6-412P-201ENST00000516434 106 ntBASIC0.18□□□□□ -2.38
HOXC9P31274 RNU6-62P-201ENST00000516526 102 ntBASIC0.18□□□□□ -2.38
HOXC9P31274 MIR3613-201ENST00000579844 87 ntBASIC0.18□□□□□ -2.38
HOXC9P31274 RNU6-86P-201ENST00000606534 107 ntBASIC0.18□□□□□ -2.38
HOXC9P31274 MIR499B-201ENST00000636498 73 ntBASIC0.18□□□□□ -2.38
HOXC9P31274 RNU6-1125P-201ENST00000363601 107 ntBASIC0.17□□□□□ -2.38
HOXC9P31274 RNU6-957P-201ENST00000363652 99 ntBASIC0.17□□□□□ -2.38
HOXC9P31274 RNU6-1107P-201ENST00000364817 104 ntBASIC0.17□□□□□ -2.38
HOXC9P31274 RNU6-480P-201ENST00000384332 107 ntBASIC0.17□□□□□ -2.38
HOXC9P31274 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.17□□□□□ -2.38
HOXC9P31274 RNA5SP484-201ENST00000458857 111 ntBASIC0.17□□□□□ -2.38
HOXC9P31274 MIR4315-1-201ENST00000636800 73 ntBASIC0.17□□□□□ -2.38
HOXC9P31274 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.17□□□□□ -2.38
HOXC9P31274 MIR4315-2-201ENST00000640925 73 ntBASIC0.17□□□□□ -2.38
HOXC9P31274 AC073869.9-201ENST00000641610 120 ntBASIC0.17□□□□□ -2.38
HOXC9P31274 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.16□□□□□ -2.38
HOXC9P31274 Y_RNA.68-201ENST00000362881 102 ntBASIC0.16□□□□□ -2.38
HOXC9P31274 Y_RNA.78-201ENST00000362970 110 ntBASIC0.16□□□□□ -2.38
HOXC9P31274 RNU6-509P-201ENST00000363519 107 ntBASIC0.16□□□□□ -2.38
HOXC9P31274 RNU6-1144P-201ENST00000384247 104 ntBASIC0.16□□□□□ -2.38
HOXC9P31274 RNU6-22P-201ENST00000384355 107 ntBASIC0.16□□□□□ -2.38
HOXC9P31274 RNU6-476P-201ENST00000384726 107 ntBASIC0.16□□□□□ -2.38
HOXC9P31274 MIR643-201ENST00000385267 97 ntBASIC0.16□□□□□ -2.38
HOXC9P31274 MIR1295A-201ENST00000408463 79 ntBASIC0.16□□□□□ -2.38
HOXC9P31274 AC006210.1-201ENST00000424882 111 ntBASIC0.16□□□□□ -2.38
HOXC9P31274 NAMPTP3-201ENST00000569273 224 ntBASIC0.16□□□□□ -2.38
HOXC9P31274 MIR5190-201ENST00000581537 80 ntBASIC0.16□□□□□ -2.38
HOXC9P31274 U6.100-201ENST00000636230 99 ntBASIC0.16□□□□□ -2.38
HOXC9P31274 RNU6-1244P-201ENST00000363614 108 ntBASIC0.15□□□□□ -2.39
HOXC9P31274 RNU6-1014P-201ENST00000383940 103 ntBASIC0.15□□□□□ -2.39
HOXC9P31274 RNU6-127P-201ENST00000390897 107 ntBASIC0.15□□□□□ -2.39
HOXC9P31274 RNU6-1154P-201ENST00000391001 104 ntBASIC0.15□□□□□ -2.39
HOXC9P31274 RNA5SP299-201ENST00000391203 116 ntBASIC0.15□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 185.2 ms