Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 Y_RNA.342-201ENST00000365352 113 ntBASIC0.41□□□□□ -2.34
HOXC4P09017 RNU6-147P-201ENST00000383983 107 ntBASIC0.41□□□□□ -2.34
HOXC4P09017 SNORA50A-201ENST00000384225 134 ntBASIC0.41□□□□□ -2.34
HOXC4P09017 SNORD38.2-201ENST00000384470 69 ntBASIC0.41□□□□□ -2.34
HOXC4P09017 MIR181B2-201ENST00000385004 89 ntBASIC0.41□□□□□ -2.34
HOXC4P09017 Y_RNA.601-201ENST00000410500 113 ntBASIC0.41□□□□□ -2.34
HOXC4P09017 AC244505.6-201ENST00000452829 130 ntBASIC0.41□□□□□ -2.34
HOXC4P09017 MIR548H5-201ENST00000580314 60 ntBASIC0.41□□□□□ -2.34
HOXC4P09017 AC010487.4-201ENST00000637027 61 ntBASIC0.41□□□□□ -2.34
HOXC4P09017 Y_RNA.36-201ENST00000362602 112 ntBASIC0.4□□□□□ -2.35
HOXC4P09017 Y_RNA.57-201ENST00000362806 113 ntBASIC0.4□□□□□ -2.35
HOXC4P09017 RNU6-1244P-201ENST00000363614 108 ntBASIC0.4□□□□□ -2.35
HOXC4P09017 Y_RNA.174-201ENST00000363781 105 ntBASIC0.4□□□□□ -2.35
HOXC4P09017 Y_RNA.221-201ENST00000364248 96 ntBASIC0.4□□□□□ -2.35
HOXC4P09017 RNU4-36P-201ENST00000364294 144 ntBASIC0.4□□□□□ -2.35
HOXC4P09017 VTRNA1-3-201ENST00000365645 89 ntBASIC0.4□□□□□ -2.35
HOXC4P09017 MIR599-201ENST00000385069 95 ntBASIC0.4□□□□□ -2.35
HOXC4P09017 AL161932.1-201ENST00000437408 146 ntBASIC0.4□□□□□ -2.35
HOXC4P09017 SCARNA23-201ENST00000516060 130 ntBASIC0.4□□□□□ -2.35
HOXC4P09017 RNA5SP480-201ENST00000516840 109 ntBASIC0.4□□□□□ -2.35
HOXC4P09017 RNA5SP94-201ENST00000516917 108 ntBASIC0.4□□□□□ -2.35
HOXC4P09017 AC138869.1-201ENST00000568623 124 ntBASIC0.4□□□□□ -2.35
HOXC4P09017 AC096720.1-201ENST00000604441 183 ntBASIC0.4□□□□□ -2.35
HOXC4P09017 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.4□□□□□ -2.35
HOXC4P09017 RNU6-766P-201ENST00000362478 107 ntBASIC0.39□□□□□ -2.35
HOXC4P09017 SNORD36A-201ENST00000362874 73 ntBASIC0.39□□□□□ -2.35
HOXC4P09017 Y_RNA.78-201ENST00000362970 110 ntBASIC0.39□□□□□ -2.35
HOXC4P09017 SNORD115-24-201ENST00000363528 82 ntBASIC0.39□□□□□ -2.35
HOXC4P09017 RNA5SP517-201ENST00000364724 117 ntBASIC0.39□□□□□ -2.35
HOXC4P09017 SNORD28-201ENST00000384706 75 ntBASIC0.39□□□□□ -2.35
HOXC4P09017 RNU6-644P-201ENST00000391155 98 ntBASIC0.39□□□□□ -2.35
HOXC4P09017 AL031737.1-201ENST00000450125 223 ntBASIC0.39□□□□□ -2.35
HOXC4P09017 Y_RNA.809-201ENST00000516058 95 ntBASIC0.39□□□□□ -2.35
HOXC4P09017 RNU7-161P-201ENST00000517289 62 ntBASIC0.39□□□□□ -2.35
HOXC4P09017 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.39□□□□□ -2.35
HOXC4P09017 AC103810.7-201ENST00000607821 91 ntBASIC0.39□□□□□ -2.35
HOXC4P09017 AC244669.1-204ENST00000621564 178 ntBASIC0.39□□□□□ -2.35
HOXC4P09017 AC025521.1-201ENST00000621624 286 ntBASIC0.39□□□□□ -2.35
HOXC4P09017 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.38□□□□□ -2.35
HOXC4P09017 SNORD45B-201ENST00000364617 72 ntBASIC0.38□□□□□ -2.35
HOXC4P09017 RNU6-524P-201ENST00000384270 107 ntBASIC0.38□□□□□ -2.35
HOXC4P09017 MIR140-201ENST00000385282 100 ntBASIC0.38□□□□□ -2.35
HOXC4P09017 RNA5SP47-201ENST00000517230 109 ntBASIC0.38□□□□□ -2.35
HOXC4P09017 Y_RNA.81-201ENST00000362997 102 ntBASIC0.37□□□□□ -2.35
HOXC4P09017 RNA5SP403-201ENST00000363598 108 ntBASIC0.37□□□□□ -2.35
HOXC4P09017 Y_RNA.466-201ENST00000384294 113 ntBASIC0.37□□□□□ -2.35
HOXC4P09017 RNU6-813P-201ENST00000384691 107 ntBASIC0.37□□□□□ -2.35
HOXC4P09017 MIR519A1-201ENST00000385257 85 ntBASIC0.37□□□□□ -2.35
HOXC4P09017 AC097635.1-201ENST00000450678 155 ntBASIC0.37□□□□□ -2.35
HOXC4P09017 snoU13.11-201ENST00000459219 104 ntBASIC0.37□□□□□ -2.35
HOXC4P09017 RNU7-61P-201ENST00000515897 61 ntBASIC0.37□□□□□ -2.35
HOXC4P09017 RNU6-469P-201ENST00000516253 101 ntBASIC0.37□□□□□ -2.35
HOXC4P09017 RN7SKP12-201ENST00000516275 143 ntBASIC0.37□□□□□ -2.35
HOXC4P09017 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.37□□□□□ -2.35
HOXC4P09017 AL513043.2-201ENST00000573941 143 ntBASIC0.37□□□□□ -2.35
HOXC4P09017 RNU7-10P-201ENST00000607194 63 ntBASIC0.37□□□□□ -2.35
HOXC4P09017 Y_RNA.10-201ENST00000362371 110 ntBASIC0.36□□□□□ -2.35
HOXC4P09017 RNU6-1260P-201ENST00000362944 107 ntBASIC0.36□□□□□ -2.35
HOXC4P09017 RNU6-957P-201ENST00000363652 99 ntBASIC0.36□□□□□ -2.35
HOXC4P09017 RNU6-153P-201ENST00000364422 104 ntBASIC0.36□□□□□ -2.35
HOXC4P09017 RNY1P4-201ENST00000384595 115 ntBASIC0.36□□□□□ -2.35
HOXC4P09017 RNU6-1254P-201ENST00000391266 104 ntBASIC0.36□□□□□ -2.35
HOXC4P09017 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.36□□□□□ -2.35
HOXC4P09017 RNU6-162P-201ENST00000516228 103 ntBASIC0.36□□□□□ -2.35
HOXC4P09017 MIR4639-201ENST00000584938 69 ntBASIC0.36□□□□□ -2.35
HOXC4P09017 SNORA25.18-201ENST00000607153 114 ntBASIC0.36□□□□□ -2.35
HOXC4P09017 AP001318.4-201ENST00000616637 121 ntBASIC0.36□□□□□ -2.35
HOXC4P09017 RNU6-716P-201ENST00000365621 103 ntBASIC0.35□□□□□ -2.35
HOXC4P09017 RNU6-1113P-201ENST00000384348 107 ntBASIC0.35□□□□□ -2.35
HOXC4P09017 SNORA8.2-201ENST00000384372 139 ntBASIC0.35□□□□□ -2.35
HOXC4P09017 RNU6-243P-201ENST00000391140 107 ntBASIC0.35□□□□□ -2.35
HOXC4P09017 RNU7-104P-201ENST00000459398 79 ntBASIC0.35□□□□□ -2.35
HOXC4P09017 RNA5SP268-201ENST00000516828 124 ntBASIC0.35□□□□□ -2.35
HOXC4P09017 SCARNA16.5-201ENST00000517114 183 ntBASIC0.35□□□□□ -2.35
HOXC4P09017 MIR4439-201ENST00000583746 80 ntBASIC0.35□□□□□ -2.35
HOXC4P09017 MIR7107-201ENST00000611489 80 ntBASIC0.35□□□□□ -2.35
HOXC4P09017 MIR6828-201ENST00000636181 60 ntBASIC0.35□□□□□ -2.35
HOXC4P09017 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.35□□□□□ -2.35
HOXC4P09017 Y_RNA.107-201ENST00000363190 121 ntBASIC0.34□□□□□ -2.36
HOXC4P09017 RNU6-1125P-201ENST00000363601 107 ntBASIC0.34□□□□□ -2.36
HOXC4P09017 RNU6-640P-201ENST00000363693 105 ntBASIC0.34□□□□□ -2.36
HOXC4P09017 RNU6-1229P-201ENST00000364295 107 ntBASIC0.34□□□□□ -2.36
HOXC4P09017 Y_RNA.348-201ENST00000365403 103 ntBASIC0.34□□□□□ -2.36
HOXC4P09017 RNU4-45P-201ENST00000365469 141 ntBASIC0.34□□□□□ -2.36
HOXC4P09017 RNU6-480P-201ENST00000384332 107 ntBASIC0.34□□□□□ -2.36
HOXC4P09017 RNU6-905P-201ENST00000384434 107 ntBASIC0.34□□□□□ -2.36
HOXC4P09017 Y_RNA.495-201ENST00000384435 112 ntBASIC0.34□□□□□ -2.36
HOXC4P09017 MTATP8P2-201ENST00000435212 202 ntBASIC0.34□□□□□ -2.36
HOXC4P09017 RNU7-85P-201ENST00000458851 63 ntBASIC0.34□□□□□ -2.36
HOXC4P09017 RNU6-1265P-201ENST00000516342 103 ntBASIC0.34□□□□□ -2.36
HOXC4P09017 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.34□□□□□ -2.36
HOXC4P09017 Y_RNA.818-201ENST00000618813 71 ntBASIC0.34□□□□□ -2.36
HOXC4P09017 AC092634.7-201ENST00000621022 103 ntBASIC0.34□□□□□ -2.36
HOXC4P09017 TRDV1-202ENST00000621643 102 ntBASIC0.34□□□□□ -2.36
HOXC4P09017 U6.100-201ENST00000636230 99 ntBASIC0.34□□□□□ -2.36
HOXC4P09017 Y_RNA.93-201ENST00000363066 109 ntBASIC0.33□□□□□ -2.36
HOXC4P09017 Y_RNA.190-201ENST00000363964 101 ntBASIC0.33□□□□□ -2.36
HOXC4P09017 RNU6-726P-201ENST00000364680 107 ntBASIC0.33□□□□□ -2.36
HOXC4P09017 SNORD58A-201ENST00000383875 65 ntBASIC0.33□□□□□ -2.36
HOXC4P09017 Y_RNA.544-201ENST00000384650 113 ntBASIC0.33□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 231.9 ms