Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC103810.9-201ENST00000606688 112 ntBASIC1.28□□□□□ -2.2
COL3A1P02461 MIR8063-201ENST00000621930 81 ntBASIC1.28□□□□□ -2.2
COL3A1P02461 RNA5SP457-201ENST00000363657 124 ntBASIC1.27□□□□□ -2.21
COL3A1P02461 SNORD1A-201ENST00000364968 72 ntBASIC1.27□□□□□ -2.21
COL3A1P02461 Y_RNA.491-201ENST00000384417 107 ntBASIC1.27□□□□□ -2.21
COL3A1P02461 SNORD63B-201ENST00000411005 70 ntBASIC1.27□□□□□ -2.21
COL3A1P02461 SNORA25.16-201ENST00000516741 121 ntBASIC1.27□□□□□ -2.21
COL3A1P02461 SNORA44.1-201ENST00000517031 108 ntBASIC1.27□□□□□ -2.21
COL3A1P02461 MIR3664-201ENST00000579074 99 ntBASIC1.27□□□□□ -2.21
COL3A1P02461 MIR548H5-201ENST00000580314 60 ntBASIC1.27□□□□□ -2.21
COL3A1P02461 MIR1297-201ENST00000637311 77 ntBASIC1.27□□□□□ -2.21
COL3A1P02461 RNA5SP292-201ENST00000390974 118 ntBASIC1.26□□□□□ -2.21
COL3A1P02461 Y_RNA.588-201ENST00000391254 102 ntBASIC1.26□□□□□ -2.21
COL3A1P02461 AC005908.1-201ENST00000468701 347 ntBASIC1.26□□□□□ -2.21
COL3A1P02461 FGF7P7-201ENST00000514120 227 ntBASIC1.26□□□□□ -2.21
COL3A1P02461 RNU6-75P-201ENST00000515944 104 ntBASIC1.26□□□□□ -2.21
COL3A1P02461 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
COL3A1P02461 RNU6-654P-201ENST00000364373 107 ntBASIC1.25□□□□□ -2.21
COL3A1P02461 RNU6-807P-201ENST00000516805 107 ntBASIC1.25□□□□□ -2.21
COL3A1P02461 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.25□□□□□ -2.21
COL3A1P02461 AC104996.3-201ENST00000590718 94 ntBASIC1.25□□□□□ -2.21
COL3A1P02461 AC013244.2-201ENST00000603396 103 ntBASIC1.25□□□□□ -2.21
COL3A1P02461 uc_338.6-201ENST00000613544 171 ntBASIC1.25□□□□□ -2.21
COL3A1P02461 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.25□□□□□ -2.21
COL3A1P02461 Y_RNA.56-201ENST00000362798 112 ntBASIC1.24□□□□□ -2.21
COL3A1P02461 RNU6-1065P-201ENST00000384513 106 ntBASIC1.24□□□□□ -2.21
COL3A1P02461 Y_RNA.536-201ENST00000384621 113 ntBASIC1.24□□□□□ -2.21
COL3A1P02461 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
COL3A1P02461 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
COL3A1P02461 SNORD77.2-201ENST00000391045 68 ntBASIC1.24□□□□□ -2.21
COL3A1P02461 AC015818.7-201ENST00000428754 109 ntBASIC1.24□□□□□ -2.21
COL3A1P02461 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.24□□□□□ -2.21
COL3A1P02461 RNU7-185P-201ENST00000459215 60 ntBASIC1.24□□□□□ -2.21
COL3A1P02461 RNU6-1108P-201ENST00000516308 104 ntBASIC1.24□□□□□ -2.21
COL3A1P02461 MIR3064-201ENST00000581130 66 ntBASIC1.24□□□□□ -2.21
COL3A1P02461 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.24□□□□□ -2.21
COL3A1P02461 AC023934.1-201ENST00000574529 2389 ntBASIC1.24□□□□□ -2.21
COL3A1P02461 RNU6-957P-201ENST00000363652 99 ntBASIC1.24□□□□□ -2.21
COL3A1P02461 SNORD113.3-201ENST00000364630 78 ntBASIC1.24□□□□□ -2.21
COL3A1P02461 RNU6-132P-201ENST00000383863 107 ntBASIC1.24□□□□□ -2.21
COL3A1P02461 MIR30A-201ENST00000385092 71 ntBASIC1.24□□□□□ -2.21
COL3A1P02461 SNORD100-201ENST00000408573 76 ntBASIC1.24□□□□□ -2.21
COL3A1P02461 RNA5SP95-201ENST00000410319 137 ntBASIC1.24□□□□□ -2.21
COL3A1P02461 TRAJ51-201ENST00000504127 63 ntBASIC1.24□□□□□ -2.21
COL3A1P02461 MIR4299-201ENST00000577899 72 ntBASIC1.24□□□□□ -2.21
COL3A1P02461 AC211469.2-201ENST00000605461 205 ntBASIC1.24□□□□□ -2.21
COL3A1P02461 MIRLET7F1-201ENST00000362202 87 ntBASIC1.23□□□□□ -2.21
COL3A1P02461 RNU6-934P-201ENST00000365154 107 ntBASIC1.23□□□□□ -2.21
COL3A1P02461 RNY4P3-201ENST00000365254 95 ntBASIC1.23□□□□□ -2.21
COL3A1P02461 RNU6-411P-201ENST00000384451 107 ntBASIC1.23□□□□□ -2.21
COL3A1P02461 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.23□□□□□ -2.21
COL3A1P02461 AC114801.3-201ENST00000510231 177 ntBASIC1.23□□□□□ -2.21
COL3A1P02461 Y_RNA.681-201ENST00000516445 113 ntBASIC1.23□□□□□ -2.21
COL3A1P02461 CYP3A137P-201ENST00000562436 69 ntBASIC1.23□□□□□ -2.21
COL3A1P02461 MIR3937-201ENST00000580135 106 ntBASIC1.23□□□□□ -2.21
COL3A1P02461 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.23□□□□□ -2.21
COL3A1P02461 MIR6082-201ENST00000613604 109 ntBASIC1.23□□□□□ -2.21
COL3A1P02461 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.23□□□□□ -2.21
COL3A1P02461 RNU6-208P-201ENST00000362431 107 ntBASIC1.22□□□□□ -2.21
COL3A1P02461 Y_RNA.239-201ENST00000364444 113 ntBASIC1.22□□□□□ -2.21
COL3A1P02461 MIR519A1-201ENST00000385257 85 ntBASIC1.22□□□□□ -2.21
COL3A1P02461 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
COL3A1P02461 MIR1257-201ENST00000408490 117 ntBASIC1.22□□□□□ -2.21
COL3A1P02461 RNU6-1054P-201ENST00000411293 104 ntBASIC1.22□□□□□ -2.21
COL3A1P02461 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.22□□□□□ -2.21
COL3A1P02461 RNU7-195P-201ENST00000458793 62 ntBASIC1.22□□□□□ -2.21
COL3A1P02461 SCARNA18B-201ENST00000458806 135 ntBASIC1.22□□□□□ -2.21
COL3A1P02461 Y_RNA.809-201ENST00000516058 95 ntBASIC1.22□□□□□ -2.21
COL3A1P02461 YWHAEP2-201ENST00000580066 112 ntBASIC1.22□□□□□ -2.21
COL3A1P02461 YWHAEP3-201ENST00000582767 121 ntBASIC1.22□□□□□ -2.21
COL3A1P02461 RNU6-1260P-201ENST00000362944 107 ntBASIC1.21□□□□□ -2.22
COL3A1P02461 RNU6-590P-201ENST00000365039 107 ntBASIC1.21□□□□□ -2.22
COL3A1P02461 RNU6-871P-201ENST00000516122 100 ntBASIC1.21□□□□□ -2.22
COL3A1P02461 RNU6-523P-201ENST00000516304 54 ntBASIC1.21□□□□□ -2.22
COL3A1P02461 RNU6-765P-201ENST00000516916 99 ntBASIC1.21□□□□□ -2.22
COL3A1P02461 MIR3134-201ENST00000579433 74 ntBASIC1.21□□□□□ -2.22
COL3A1P02461 AC103810.8-201ENST00000607347 118 ntBASIC1.21□□□□□ -2.22
COL3A1P02461 MIR302D-201ENST00000362275 68 ntBASIC1.2□□□□□ -2.22
COL3A1P02461 Y_RNA.13-201ENST00000362403 112 ntBASIC1.2□□□□□ -2.22
COL3A1P02461 Y_RNA.330-201ENST00000365230 109 ntBASIC1.2□□□□□ -2.22
COL3A1P02461 MIR216A-201ENST00000385063 110 ntBASIC1.2□□□□□ -2.22
COL3A1P02461 MIR125B2-201ENST00000385128 89 ntBASIC1.2□□□□□ -2.22
COL3A1P02461 SNORD111-201ENST00000408139 94 ntBASIC1.2□□□□□ -2.22
COL3A1P02461 RPS27P16-201ENST00000425758 201 ntBASIC1.2□□□□□ -2.22
COL3A1P02461 RNU6-70P-201ENST00000516438 60 ntBASIC1.2□□□□□ -2.22
COL3A1P02461 RNU6-448P-201ENST00000517052 107 ntBASIC1.2□□□□□ -2.22
COL3A1P02461 AC138907.6-201ENST00000568401 126 ntBASIC1.2□□□□□ -2.22
COL3A1P02461 AC138869.1-201ENST00000568623 124 ntBASIC1.2□□□□□ -2.22
COL3A1P02461 RNU6-664P-201ENST00000362381 107 ntBASIC1.19□□□□□ -2.22
COL3A1P02461 RNU6-303P-201ENST00000517091 106 ntBASIC1.19□□□□□ -2.22
COL3A1P02461 Y_RNA.12-201ENST00000362393 112 ntBASIC1.18□□□□□ -2.22
COL3A1P02461 RNU5F-1-201ENST00000362507 117 ntBASIC1.18□□□□□ -2.22
COL3A1P02461 Y_RNA.68-201ENST00000362881 102 ntBASIC1.18□□□□□ -2.22
COL3A1P02461 RNU6-1051P-201ENST00000365471 102 ntBASIC1.18□□□□□ -2.22
COL3A1P02461 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.18□□□□□ -2.22
COL3A1P02461 SNORD83.1-201ENST00000411362 77 ntBASIC1.18□□□□□ -2.22
COL3A1P02461 AC092628.1-201ENST00000436250 252 ntBASIC1.18□□□□□ -2.22
COL3A1P02461 snoU13.21-201ENST00000459368 105 ntBASIC1.18□□□□□ -2.22
COL3A1P02461 Y_RNA.697-201ENST00000516776 113 ntBASIC1.18□□□□□ -2.22
COL3A1P02461 TRDV1-202ENST00000621643 102 ntBASIC1.18□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms