Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 Y_RNA.544-201ENST00000384650 113 ntBASIC1.02□□□□□ -2.25
RAPGEF3O95398 ACA64.5-201ENST00000516207 127 ntBASIC1.02□□□□□ -2.25
RAPGEF3O95398 RNU6-537P-201ENST00000517277 103 ntBASIC1.02□□□□□ -2.25
RAPGEF3O95398 Y_RNA.96-201ENST00000363092 109 ntBASIC1.01□□□□□ -2.25
RAPGEF3O95398 RNU6-1125P-201ENST00000363601 107 ntBASIC1.01□□□□□ -2.25
RAPGEF3O95398 RNU6-1163P-201ENST00000364516 107 ntBASIC1.01□□□□□ -2.25
RAPGEF3O95398 RNU6-480P-201ENST00000384332 107 ntBASIC1.01□□□□□ -2.25
RAPGEF3O95398 RNU6-469P-201ENST00000516253 101 ntBASIC1.01□□□□□ -2.25
RAPGEF3O95398 MIR590-201ENST00000385008 97 ntBASIC1□□□□□ -2.25
RAPGEF3O95398 SNORA19.1-201ENST00000410656 129 ntBASIC1□□□□□ -2.25
RAPGEF3O95398 RPL39P28-201ENST00000465655 155 ntBASIC1□□□□□ -2.25
RAPGEF3O95398 SNORA31.14-201ENST00000516728 116 ntBASIC1□□□□□ -2.25
RAPGEF3O95398 MIR6086-201ENST00000638065 55 ntBASIC1□□□□□ -2.25
RAPGEF3O95398 Y_RNA.32-201ENST00000362589 110 ntBASIC0.99□□□□□ -2.25
RAPGEF3O95398 RNU6-110P-201ENST00000384508 104 ntBASIC0.99□□□□□ -2.25
RAPGEF3O95398 SNORD63B-201ENST00000411005 70 ntBASIC0.99□□□□□ -2.25
RAPGEF3O95398 AC109327.2-201ENST00000448339 378 ntBASIC0.99□□□□□ -2.25
RAPGEF3O95398 AC244505.6-201ENST00000452829 130 ntBASIC0.99□□□□□ -2.25
RAPGEF3O95398 MIR18A-201ENST00000362310 71 ntBASIC0.98□□□□□ -2.25
RAPGEF3O95398 Y_RNA.93-201ENST00000363066 109 ntBASIC0.98□□□□□ -2.25
RAPGEF3O95398 AC097635.1-201ENST00000450678 155 ntBASIC0.98□□□□□ -2.25
RAPGEF3O95398 TRAJ51-201ENST00000504127 63 ntBASIC0.98□□□□□ -2.25
RAPGEF3O95398 PSMC1P5-201ENST00000512850 177 ntBASIC0.98□□□□□ -2.25
RAPGEF3O95398 RNU6-158P-201ENST00000517104 100 ntBASIC0.98□□□□□ -2.25
RAPGEF3O95398 MIR4653-201ENST00000585107 83 ntBASIC0.98□□□□□ -2.25
RAPGEF3O95398 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.97□□□□□ -2.25
RAPGEF3O95398 MIR450A1-201ENST00000362262 91 ntBASIC0.97□□□□□ -2.25
RAPGEF3O95398 Y_RNA.57-201ENST00000362806 113 ntBASIC0.97□□□□□ -2.25
RAPGEF3O95398 RNU6-1244P-201ENST00000363614 108 ntBASIC0.97□□□□□ -2.25
RAPGEF3O95398 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
RAPGEF3O95398 Y_RNA.107-201ENST00000363190 121 ntBASIC0.96□□□□□ -2.26
RAPGEF3O95398 RNU6-32P-201ENST00000383948 107 ntBASIC0.96□□□□□ -2.26
RAPGEF3O95398 RNU6-147P-201ENST00000383983 107 ntBASIC0.96□□□□□ -2.26
RAPGEF3O95398 RNU6-13P-201ENST00000384248 107 ntBASIC0.96□□□□□ -2.26
RAPGEF3O95398 RNU6-12P-201ENST00000384604 107 ntBASIC0.96□□□□□ -2.26
RAPGEF3O95398 RNU6-813P-201ENST00000384691 107 ntBASIC0.96□□□□□ -2.26
RAPGEF3O95398 RNU6-41P-201ENST00000384741 107 ntBASIC0.96□□□□□ -2.26
RAPGEF3O95398 RNA5SP222-201ENST00000411039 105 ntBASIC0.96□□□□□ -2.26
RAPGEF3O95398 MIR4777-201ENST00000583710 86 ntBASIC0.96□□□□□ -2.26
RAPGEF3O95398 RNA5SP245-201ENST00000364239 121 ntBASIC0.95□□□□□ -2.26
RAPGEF3O95398 RNU6-1254P-201ENST00000391266 104 ntBASIC0.95□□□□□ -2.26
RAPGEF3O95398 RNU6-229P-201ENST00000516614 102 ntBASIC0.95□□□□□ -2.26
RAPGEF3O95398 AC012531.4-201ENST00000616509 177 ntBASIC0.95□□□□□ -2.26
RAPGEF3O95398 MIR2052-201ENST00000636055 55 ntBASIC0.95□□□□□ -2.26
RAPGEF3O95398 AC091304.10-201ENST00000641554 121 ntBASIC0.95□□□□□ -2.26
RAPGEF3O95398 RNU6-1260P-201ENST00000362944 107 ntBASIC0.94□□□□□ -2.26
RAPGEF3O95398 RNU6-795P-201ENST00000516323 103 ntBASIC0.94□□□□□ -2.26
RAPGEF3O95398 MIR3678-201ENST00000578455 94 ntBASIC0.94□□□□□ -2.26
RAPGEF3O95398 MIR4639-201ENST00000584938 69 ntBASIC0.94□□□□□ -2.26
RAPGEF3O95398 RNU6-86P-201ENST00000606534 107 ntBASIC0.94□□□□□ -2.26
RAPGEF3O95398 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.94□□□□□ -2.26
RAPGEF3O95398 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.94□□□□□ -2.26
RAPGEF3O95398 RNU6-153P-201ENST00000364422 104 ntBASIC0.93□□□□□ -2.26
RAPGEF3O95398 MIR516A2-201ENST00000384888 90 ntBASIC0.93□□□□□ -2.26
RAPGEF3O95398 MIR516A1-201ENST00000385033 90 ntBASIC0.93□□□□□ -2.26
RAPGEF3O95398 Y_RNA.809-201ENST00000516058 95 ntBASIC0.93□□□□□ -2.26
RAPGEF3O95398 Y_RNA.705-201ENST00000516862 110 ntBASIC0.93□□□□□ -2.26
RAPGEF3O95398 MIR599-201ENST00000385069 95 ntBASIC0.92□□□□□ -2.26
RAPGEF3O95398 MIR644A-201ENST00000385262 94 ntBASIC0.92□□□□□ -2.26
RAPGEF3O95398 RNU6-243P-201ENST00000391140 107 ntBASIC0.92□□□□□ -2.26
RAPGEF3O95398 RNU6-972P-201ENST00000391208 107 ntBASIC0.92□□□□□ -2.26
RAPGEF3O95398 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.92□□□□□ -2.26
RAPGEF3O95398 RNU7-195P-201ENST00000458793 62 ntBASIC0.92□□□□□ -2.26
RAPGEF3O95398 RNU7-106P-201ENST00000459514 67 ntBASIC0.92□□□□□ -2.26
RAPGEF3O95398 RNU6-109P-201ENST00000516364 107 ntBASIC0.92□□□□□ -2.26
RAPGEF3O95398 RNU6-184P-201ENST00000516514 107 ntBASIC0.92□□□□□ -2.26
RAPGEF3O95398 RNU6-1229P-201ENST00000364295 107 ntBASIC0.91□□□□□ -2.26
RAPGEF3O95398 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.91□□□□□ -2.26
RAPGEF3O95398 VTRNA1-3-201ENST00000365645 89 ntBASIC0.9□□□□□ -2.27
RAPGEF3O95398 Y_RNA.467-201ENST00000384297 102 ntBASIC0.9□□□□□ -2.27
RAPGEF3O95398 MIR181B2-201ENST00000385004 89 ntBASIC0.9□□□□□ -2.27
RAPGEF3O95398 MIR146A-201ENST00000385201 99 ntBASIC0.9□□□□□ -2.27
RAPGEF3O95398 SNORA40.13-201ENST00000516379 120 ntBASIC0.9□□□□□ -2.27
RAPGEF3O95398 AP001318.4-201ENST00000616637 121 ntBASIC0.9□□□□□ -2.27
RAPGEF3O95398 SNORD36A-201ENST00000362874 73 ntBASIC0.89□□□□□ -2.27
RAPGEF3O95398 SNORD18A-201ENST00000363753 72 ntBASIC0.89□□□□□ -2.27
RAPGEF3O95398 Y_RNA.495-201ENST00000384435 112 ntBASIC0.89□□□□□ -2.27
RAPGEF3O95398 SNORD28-201ENST00000384706 75 ntBASIC0.89□□□□□ -2.27
RAPGEF3O95398 MIR140-201ENST00000385282 100 ntBASIC0.89□□□□□ -2.27
RAPGEF3O95398 RNU6-644P-201ENST00000391155 98 ntBASIC0.89□□□□□ -2.27
RAPGEF3O95398 RNA5SP285-201ENST00000516619 119 ntBASIC0.89□□□□□ -2.27
RAPGEF3O95398 SNORD115-24-201ENST00000363528 82 ntBASIC0.88□□□□□ -2.27
RAPGEF3O95398 SNORA36.2-201ENST00000384004 127 ntBASIC0.88□□□□□ -2.27
RAPGEF3O95398 RNU6-887P-201ENST00000410660 100 ntBASIC0.88□□□□□ -2.27
RAPGEF3O95398 MTATP8P2-201ENST00000435212 202 ntBASIC0.88□□□□□ -2.27
RAPGEF3O95398 MIR548Z-201ENST00000584743 97 ntBASIC0.88□□□□□ -2.27
RAPGEF3O95398 AC103810.7-201ENST00000607821 91 ntBASIC0.87□□□□□ -2.27
RAPGEF3O95398 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.86□□□□□ -2.27
RAPGEF3O95398 RNA5SP47-201ENST00000517230 109 ntBASIC0.86□□□□□ -2.27
RAPGEF3O95398 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.86□□□□□ -2.27
RAPGEF3O95398 RNA5SP403-201ENST00000363598 108 ntBASIC0.85□□□□□ -2.27
RAPGEF3O95398 RNA5SP94-201ENST00000516917 108 ntBASIC0.85□□□□□ -2.27
RAPGEF3O95398 SCARNA16.5-201ENST00000517114 183 ntBASIC0.85□□□□□ -2.27
RAPGEF3O95398 AC244669.1-204ENST00000621564 178 ntBASIC0.85□□□□□ -2.27
RAPGEF3O95398 AC025521.1-201ENST00000621624 286 ntBASIC0.85□□□□□ -2.27
RAPGEF3O95398 RNU6-524P-201ENST00000384270 107 ntBASIC0.84□□□□□ -2.27
RAPGEF3O95398 Y_RNA.648-201ENST00000459455 110 ntBASIC0.84□□□□□ -2.27
RAPGEF3O95398 AL513043.2-201ENST00000573941 143 ntBASIC0.84□□□□□ -2.27
RAPGEF3O95398 MIR4514-201ENST00000581410 57 ntBASIC0.84□□□□□ -2.27
RAPGEF3O95398 MIR5087-201ENST00000635826 76 ntBASIC0.84□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 237.9 ms