Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 MIR583-201ENST00000384846 75 ntBASIC1.95□□□□□ -2.1
USP3Q9Y6I4 SNORA75.2-201ENST00000391138 150 ntBASIC1.95□□□□□ -2.1
USP3Q9Y6I4 SNORA75.3-201ENST00000391231 150 ntBASIC1.95□□□□□ -2.1
USP3Q9Y6I4 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.95□□□□□ -2.1
USP3Q9Y6I4 snoU13.21-201ENST00000459368 105 ntBASIC1.95□□□□□ -2.1
USP3Q9Y6I4 RNU6-448P-201ENST00000517052 107 ntBASIC1.95□□□□□ -2.1
USP3Q9Y6I4 RNU7-156P-201ENST00000517214 74 ntBASIC1.95□□□□□ -2.1
USP3Q9Y6I4 MTRNR2L2-201ENST00000604882 87 ntBASIC1.95□□□□□ -2.1
USP3Q9Y6I4 SNORD101-201ENST00000384027 73 ntBASIC1.94□□□□□ -2.1
USP3Q9Y6I4 SNORA80D-201ENST00000384488 135 ntBASIC1.94□□□□□ -2.1
USP3Q9Y6I4 MIR9-3-201ENST00000385084 90 ntBASIC1.94□□□□□ -2.1
USP3Q9Y6I4 SUMO2P12-201ENST00000405924 140 ntBASIC1.94□□□□□ -2.1
USP3Q9Y6I4 AC003989.2-201ENST00000440224 169 ntBASIC1.94□□□□□ -2.1
USP3Q9Y6I4 RPL23AP42-201ENST00000471152 471 ntBASIC1.94□□□□□ -2.1
USP3Q9Y6I4 Y_RNA.681-201ENST00000516445 113 ntBASIC1.94□□□□□ -2.1
USP3Q9Y6I4 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.94□□□□□ -2.1
USP3Q9Y6I4 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
USP3Q9Y6I4 MIR934-201ENST00000401241 83 ntBASIC1.93□□□□□ -2.1
USP3Q9Y6I4 Y_RNA.596-201ENST00000410462 109 ntBASIC1.93□□□□□ -2.1
USP3Q9Y6I4 RNU6-902P-201ENST00000517212 91 ntBASIC1.93□□□□□ -2.1
USP3Q9Y6I4 YWHAEP2-201ENST00000580066 112 ntBASIC1.93□□□□□ -2.1
USP3Q9Y6I4 YWHAEP3-201ENST00000582767 121 ntBASIC1.93□□□□□ -2.1
USP3Q9Y6I4 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
USP3Q9Y6I4 RNU6-664P-201ENST00000362381 107 ntBASIC1.92□□□□□ -2.1
USP3Q9Y6I4 RNU6-364P-201ENST00000384387 107 ntBASIC1.92□□□□□ -2.1
USP3Q9Y6I4 MIR599-201ENST00000385069 95 ntBASIC1.92□□□□□ -2.1
USP3Q9Y6I4 MIR938-201ENST00000401216 83 ntBASIC1.92□□□□□ -2.1
USP3Q9Y6I4 RNA5SP489-201ENST00000410986 109 ntBASIC1.92□□□□□ -2.1
USP3Q9Y6I4 RNU7-21P-201ENST00000459430 62 ntBASIC1.92□□□□□ -2.1
USP3Q9Y6I4 AC114801.3-201ENST00000510231 177 ntBASIC1.92□□□□□ -2.1
USP3Q9Y6I4 MIR4676-201ENST00000583078 72 ntBASIC1.92□□□□□ -2.1
USP3Q9Y6I4 AL645939.4-201ENST00000604495 135 ntBASIC1.92□□□□□ -2.1
USP3Q9Y6I4 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.92□□□□□ -2.1
USP3Q9Y6I4 MIR7843-201ENST00000622274 79 ntBASIC1.92□□□□□ -2.1
USP3Q9Y6I4 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
USP3Q9Y6I4 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
USP3Q9Y6I4 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.91□□□□□ -2.1
USP3Q9Y6I4 RNU6-590P-201ENST00000365039 107 ntBASIC1.91□□□□□ -2.1
USP3Q9Y6I4 RNU6-1051P-201ENST00000365471 102 ntBASIC1.91□□□□□ -2.1
USP3Q9Y6I4 MIR764-201ENST00000390811 85 ntBASIC1.91□□□□□ -2.1
USP3Q9Y6I4 AC074348.1-201ENST00000426503 132 ntBASIC1.91□□□□□ -2.1
USP3Q9Y6I4 SCARNA18B-201ENST00000458806 135 ntBASIC1.91□□□□□ -2.1
USP3Q9Y6I4 RNU7-90P-201ENST00000459216 62 ntBASIC1.91□□□□□ -2.1
USP3Q9Y6I4 MIR4448-201ENST00000584360 86 ntBASIC1.91□□□□□ -2.1
USP3Q9Y6I4 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
USP3Q9Y6I4 AL591806.2-201ENST00000433122 173 ntBASIC1.9□□□□□ -2.11
USP3Q9Y6I4 snoU13.23-201ENST00000458863 104 ntBASIC1.9□□□□□ -2.11
USP3Q9Y6I4 AC004223.1-201ENST00000479840 271 ntBASIC1.9□□□□□ -2.11
USP3Q9Y6I4 RNU6-523P-201ENST00000516304 54 ntBASIC1.9□□□□□ -2.11
USP3Q9Y6I4 RNU6-1265P-201ENST00000516342 103 ntBASIC1.9□□□□□ -2.11
USP3Q9Y6I4 MIR4696-201ENST00000581431 70 ntBASIC1.9□□□□□ -2.11
USP3Q9Y6I4 AL359821.1-201ENST00000605519 182 ntBASIC1.9□□□□□ -2.11
USP3Q9Y6I4 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
USP3Q9Y6I4 Y_RNA.12-201ENST00000362393 112 ntBASIC1.89□□□□□ -2.11
USP3Q9Y6I4 SNORA16.1-201ENST00000364597 132 ntBASIC1.89□□□□□ -2.11
USP3Q9Y6I4 RNU6-935P-201ENST00000410371 100 ntBASIC1.89□□□□□ -2.11
USP3Q9Y6I4 RNU7-40P-201ENST00000516397 64 ntBASIC1.89□□□□□ -2.11
USP3Q9Y6I4 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.89□□□□□ -2.11
USP3Q9Y6I4 MIR4255-201ENST00000579351 72 ntBASIC1.89□□□□□ -2.11
USP3Q9Y6I4 MIR3134-201ENST00000579433 74 ntBASIC1.89□□□□□ -2.11
USP3Q9Y6I4 Y_RNA.788-201ENST00000622394 112 ntBASIC1.89□□□□□ -2.11
USP3Q9Y6I4 AC027335.2-201ENST00000624030 375 ntBASIC1.89□□□□□ -2.11
USP3Q9Y6I4 RNU6-681P-201ENST00000364012 104 ntBASIC1.88□□□□□ -2.11
USP3Q9Y6I4 RNU6-535P-201ENST00000384722 107 ntBASIC1.88□□□□□ -2.11
USP3Q9Y6I4 MIR676-201ENST00000390702 67 ntBASIC1.88□□□□□ -2.11
USP3Q9Y6I4 RNU6-994P-201ENST00000410507 111 ntBASIC1.88□□□□□ -2.11
USP3Q9Y6I4 AC244505.6-201ENST00000452829 130 ntBASIC1.88□□□□□ -2.11
USP3Q9Y6I4 SNORD115-44-201ENST00000365391 82 ntBASIC1.87□□□□□ -2.11
USP3Q9Y6I4 Y_RNA.532-201ENST00000384590 113 ntBASIC1.87□□□□□ -2.11
USP3Q9Y6I4 RNU6-291P-201ENST00000384720 107 ntBASIC1.87□□□□□ -2.11
USP3Q9Y6I4 SNORD12-201ENST00000391002 90 ntBASIC1.87□□□□□ -2.11
USP3Q9Y6I4 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.87□□□□□ -2.11
USP3Q9Y6I4 AC015712.3-201ENST00000559380 164 ntBASIC1.87□□□□□ -2.11
USP3Q9Y6I4 AC008608.1-201ENST00000603910 127 ntBASIC1.87□□□□□ -2.11
USP3Q9Y6I4 DLEU2_3.1-201ENST00000620005 73 ntBASIC1.87□□□□□ -2.11
USP3Q9Y6I4 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.87□□□□□ -2.11
USP3Q9Y6I4 U6.100-201ENST00000636230 99 ntBASIC1.87□□□□□ -2.11
USP3Q9Y6I4 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.86□□□□□ -2.11
USP3Q9Y6I4 SNORD48-201ENST00000364953 64 ntBASIC1.86□□□□□ -2.11
USP3Q9Y6I4 AL606490.4-201ENST00000423117 127 ntBASIC1.86□□□□□ -2.11
USP3Q9Y6I4 RNU6-539P-201ENST00000516665 103 ntBASIC1.86□□□□□ -2.11
USP3Q9Y6I4 AC084768.2-201ENST00000622736 221 ntBASIC1.86□□□□□ -2.11
USP3Q9Y6I4 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
USP3Q9Y6I4 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
USP3Q9Y6I4 Y_RNA.207-201ENST00000364142 106 ntBASIC1.85□□□□□ -2.11
USP3Q9Y6I4 Y_RNA.363-201ENST00000365529 113 ntBASIC1.85□□□□□ -2.11
USP3Q9Y6I4 RNU2-59P-201ENST00000410482 191 ntBASIC1.85□□□□□ -2.11
USP3Q9Y6I4 AC067940.1-201ENST00000458411 300 ntBASIC1.85□□□□□ -2.11
USP3Q9Y6I4 RNU6-237P-201ENST00000515985 71 ntBASIC1.85□□□□□ -2.11
USP3Q9Y6I4 SNORD79.1-201ENST00000516069 84 ntBASIC1.85□□□□□ -2.11
USP3Q9Y6I4 RNA5SP364-201ENST00000516938 78 ntBASIC1.85□□□□□ -2.11
USP3Q9Y6I4 AC023827.1-201ENST00000569247 97 ntBASIC1.85□□□□□ -2.11
USP3Q9Y6I4 Y_RNA.174-201ENST00000363781 105 ntBASIC1.84□□□□□ -2.11
USP3Q9Y6I4 RNU6-910P-201ENST00000390844 107 ntBASIC1.84□□□□□ -2.11
USP3Q9Y6I4 RNU1-119P-201ENST00000391122 165 ntBASIC1.84□□□□□ -2.11
USP3Q9Y6I4 U3.27-201ENST00000391237 200 ntBASIC1.84□□□□□ -2.11
USP3Q9Y6I4 RNU7-102P-201ENST00000458948 62 ntBASIC1.84□□□□□ -2.11
USP3Q9Y6I4 RNU6-977P-201ENST00000516411 103 ntBASIC1.84□□□□□ -2.11
USP3Q9Y6I4 RNU6-70P-201ENST00000516438 60 ntBASIC1.84□□□□□ -2.11
USP3Q9Y6I4 RNU6-1057P-201ENST00000517162 102 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 263.2 ms