Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 Y_RNA.163-201ENST00000363702 113 ntBASIC0.85□□□□□ -2.27
PCDHA1Q9Y5I3 RNU6-106P-201ENST00000384405 107 ntBASIC0.85□□□□□ -2.27
PCDHA1Q9Y5I3 MIR1302-5-201ENST00000408164 150 ntBASIC0.85□□□□□ -2.27
PCDHA1Q9Y5I3 BX276092.1-201ENST00000427368 251 ntBASIC0.85□□□□□ -2.27
PCDHA1Q9Y5I3 SNORA31.14-201ENST00000516728 116 ntBASIC0.85□□□□□ -2.27
PCDHA1Q9Y5I3 RNU6-919P-201ENST00000516731 104 ntBASIC0.85□□□□□ -2.27
PCDHA1Q9Y5I3 MTND5P40-201ENST00000559945 246 ntBASIC0.85□□□□□ -2.27
PCDHA1Q9Y5I3 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.85□□□□□ -2.27
PCDHA1Q9Y5I3 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.85□□□□□ -2.27
PCDHA1Q9Y5I3 Y_RNA.10-201ENST00000362371 110 ntBASIC0.84□□□□□ -2.27
PCDHA1Q9Y5I3 Y_RNA.32-201ENST00000362589 110 ntBASIC0.84□□□□□ -2.27
PCDHA1Q9Y5I3 Y_RNA.173-201ENST00000363776 113 ntBASIC0.84□□□□□ -2.27
PCDHA1Q9Y5I3 MIR635-201ENST00000384830 98 ntBASIC0.84□□□□□ -2.27
PCDHA1Q9Y5I3 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.84□□□□□ -2.27
PCDHA1Q9Y5I3 RNU6-135P-201ENST00000516769 101 ntBASIC0.84□□□□□ -2.27
PCDHA1Q9Y5I3 AC138907.6-201ENST00000568401 126 ntBASIC0.84□□□□□ -2.27
PCDHA1Q9Y5I3 AC138869.1-201ENST00000568623 124 ntBASIC0.84□□□□□ -2.27
PCDHA1Q9Y5I3 MIR4714-201ENST00000580728 77 ntBASIC0.84□□□□□ -2.27
PCDHA1Q9Y5I3 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.84□□□□□ -2.27
PCDHA1Q9Y5I3 RNU4-36P-201ENST00000364294 144 ntBASIC0.83□□□□□ -2.28
PCDHA1Q9Y5I3 MIR519A1-201ENST00000385257 85 ntBASIC0.83□□□□□ -2.28
PCDHA1Q9Y5I3 AC092628.1-201ENST00000436250 252 ntBASIC0.83□□□□□ -2.28
PCDHA1Q9Y5I3 SPINT5P-201ENST00000448174 155 ntBASIC0.83□□□□□ -2.28
PCDHA1Q9Y5I3 PSMC1P5-201ENST00000512850 177 ntBASIC0.83□□□□□ -2.28
PCDHA1Q9Y5I3 RNA5SP436-201ENST00000516020 115 ntBASIC0.83□□□□□ -2.28
PCDHA1Q9Y5I3 RNU6-850P-201ENST00000516934 103 ntBASIC0.83□□□□□ -2.28
PCDHA1Q9Y5I3 MIR3613-201ENST00000579844 87 ntBASIC0.83□□□□□ -2.28
PCDHA1Q9Y5I3 RNU6-170P-201ENST00000362832 104 ntBASIC0.82□□□□□ -2.28
PCDHA1Q9Y5I3 RNA5SP245-201ENST00000364239 121 ntBASIC0.82□□□□□ -2.28
PCDHA1Q9Y5I3 RNU6-755P-201ENST00000364400 103 ntBASIC0.82□□□□□ -2.28
PCDHA1Q9Y5I3 Y_RNA.342-201ENST00000365352 113 ntBASIC0.82□□□□□ -2.28
PCDHA1Q9Y5I3 Y_RNA.601-201ENST00000410500 113 ntBASIC0.82□□□□□ -2.28
PCDHA1Q9Y5I3 RNA5SP222-201ENST00000411039 105 ntBASIC0.82□□□□□ -2.28
PCDHA1Q9Y5I3 MIR4439-201ENST00000583746 80 ntBASIC0.82□□□□□ -2.28
PCDHA1Q9Y5I3 MIR4653-201ENST00000585107 83 ntBASIC0.82□□□□□ -2.28
PCDHA1Q9Y5I3 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.81□□□□□ -2.28
PCDHA1Q9Y5I3 RNU6-1113P-201ENST00000384348 107 ntBASIC0.81□□□□□ -2.28
PCDHA1Q9Y5I3 MIR508-201ENST00000384857 115 ntBASIC0.81□□□□□ -2.28
PCDHA1Q9Y5I3 MIR598-201ENST00000384868 97 ntBASIC0.81□□□□□ -2.28
PCDHA1Q9Y5I3 RNU6-554P-201ENST00000410466 106 ntBASIC0.81□□□□□ -2.28
PCDHA1Q9Y5I3 AC244505.6-201ENST00000452829 130 ntBASIC0.81□□□□□ -2.28
PCDHA1Q9Y5I3 TRAJ51-201ENST00000504127 63 ntBASIC0.81□□□□□ -2.28
PCDHA1Q9Y5I3 RNU6-904P-201ENST00000516206 101 ntBASIC0.81□□□□□ -2.28
PCDHA1Q9Y5I3 MIR3678-201ENST00000578455 94 ntBASIC0.81□□□□□ -2.28
PCDHA1Q9Y5I3 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.8□□□□□ -2.28
PCDHA1Q9Y5I3 SNORD45B-201ENST00000364617 72 ntBASIC0.8□□□□□ -2.28
PCDHA1Q9Y5I3 RNU6-469P-201ENST00000516253 101 ntBASIC0.8□□□□□ -2.28
PCDHA1Q9Y5I3 AL590095.2-201ENST00000604136 117 ntBASIC0.8□□□□□ -2.28
PCDHA1Q9Y5I3 RNU6-1163P-201ENST00000364516 107 ntBASIC0.79□□□□□ -2.28
PCDHA1Q9Y5I3 Y_RNA.567-201ENST00000384736 106 ntBASIC0.79□□□□□ -2.28
PCDHA1Q9Y5I3 MIR644A-201ENST00000385262 94 ntBASIC0.79□□□□□ -2.28
PCDHA1Q9Y5I3 AL035461.1-201ENST00000421490 332 ntBASIC0.79□□□□□ -2.28
PCDHA1Q9Y5I3 SNORD63B-201ENST00000411005 70 ntBASIC0.78□□□□□ -2.28
PCDHA1Q9Y5I3 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.78□□□□□ -2.28
PCDHA1Q9Y5I3 Y_RNA.659-201ENST00000515994 113 ntBASIC0.78□□□□□ -2.28
PCDHA1Q9Y5I3 uc_338.28-201ENST00000612082 187 ntBASIC0.78□□□□□ -2.28
PCDHA1Q9Y5I3 MIR146A-201ENST00000385201 99 ntBASIC0.77□□□□□ -2.29
PCDHA1Q9Y5I3 AC097635.1-201ENST00000450678 155 ntBASIC0.77□□□□□ -2.29
PCDHA1Q9Y5I3 RNU6-537P-201ENST00000517277 103 ntBASIC0.77□□□□□ -2.29
PCDHA1Q9Y5I3 MIR4639-201ENST00000584938 69 ntBASIC0.77□□□□□ -2.29
PCDHA1Q9Y5I3 PVT1_3.1-201ENST00000620853 95 ntBASIC0.77□□□□□ -2.29
PCDHA1Q9Y5I3 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
PCDHA1Q9Y5I3 RNU6-766P-201ENST00000362478 107 ntBASIC0.76□□□□□ -2.29
PCDHA1Q9Y5I3 Y_RNA.95-201ENST00000363079 95 ntBASIC0.76□□□□□ -2.29
PCDHA1Q9Y5I3 SNORD18A-201ENST00000363753 72 ntBASIC0.76□□□□□ -2.29
PCDHA1Q9Y5I3 SNORA51.5-201ENST00000384126 131 ntBASIC0.76□□□□□ -2.29
PCDHA1Q9Y5I3 AC109327.2-201ENST00000448339 378 ntBASIC0.76□□□□□ -2.29
PCDHA1Q9Y5I3 SCARNA23-201ENST00000516060 130 ntBASIC0.76□□□□□ -2.29
PCDHA1Q9Y5I3 RNU6-1125P-201ENST00000363601 107 ntBASIC0.75□□□□□ -2.29
PCDHA1Q9Y5I3 RNU6-756P-201ENST00000383997 107 ntBASIC0.75□□□□□ -2.29
PCDHA1Q9Y5I3 SNORA36.2-201ENST00000384004 127 ntBASIC0.75□□□□□ -2.29
PCDHA1Q9Y5I3 RNU6-480P-201ENST00000384332 107 ntBASIC0.75□□□□□ -2.29
PCDHA1Q9Y5I3 MIR140-201ENST00000385282 100 ntBASIC0.75□□□□□ -2.29
PCDHA1Q9Y5I3 SNORA19.1-201ENST00000410656 129 ntBASIC0.75□□□□□ -2.29
PCDHA1Q9Y5I3 AL031737.1-201ENST00000450125 223 ntBASIC0.75□□□□□ -2.29
PCDHA1Q9Y5I3 RNU7-106P-201ENST00000459514 67 ntBASIC0.75□□□□□ -2.29
PCDHA1Q9Y5I3 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.75□□□□□ -2.29
PCDHA1Q9Y5I3 Y_RNA.818-201ENST00000618813 71 ntBASIC0.75□□□□□ -2.29
PCDHA1Q9Y5I3 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.75□□□□□ -2.29
PCDHA1Q9Y5I3 RNU6-1260P-201ENST00000362944 107 ntBASIC0.74□□□□□ -2.29
PCDHA1Q9Y5I3 SNORD28-201ENST00000384706 75 ntBASIC0.74□□□□□ -2.29
PCDHA1Q9Y5I3 MIR516A2-201ENST00000384888 90 ntBASIC0.74□□□□□ -2.29
PCDHA1Q9Y5I3 MIR590-201ENST00000385008 97 ntBASIC0.74□□□□□ -2.29
PCDHA1Q9Y5I3 MIR516A1-201ENST00000385033 90 ntBASIC0.74□□□□□ -2.29
PCDHA1Q9Y5I3 RNU6-1254P-201ENST00000391266 104 ntBASIC0.74□□□□□ -2.29
PCDHA1Q9Y5I3 AL606490.4-201ENST00000423117 127 ntBASIC0.74□□□□□ -2.29
PCDHA1Q9Y5I3 Y_RNA.809-201ENST00000516058 95 ntBASIC0.74□□□□□ -2.29
PCDHA1Q9Y5I3 RNA5SP94-201ENST00000516917 108 ntBASIC0.74□□□□□ -2.29
PCDHA1Q9Y5I3 Y_RNA.57-201ENST00000362806 113 ntBASIC0.73□□□□□ -2.29
PCDHA1Q9Y5I3 RNU6-1244P-201ENST00000363614 108 ntBASIC0.73□□□□□ -2.29
PCDHA1Q9Y5I3 MIR599-201ENST00000385069 95 ntBASIC0.73□□□□□ -2.29
PCDHA1Q9Y5I3 RNU7-195P-201ENST00000458793 62 ntBASIC0.73□□□□□ -2.29
PCDHA1Q9Y5I3 RNA5SP47-201ENST00000517230 109 ntBASIC0.73□□□□□ -2.29
PCDHA1Q9Y5I3 RNU6-86P-201ENST00000606534 107 ntBASIC0.73□□□□□ -2.29
PCDHA1Q9Y5I3 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.73□□□□□ -2.29
PCDHA1Q9Y5I3 AC091304.10-201ENST00000641554 121 ntBASIC0.73□□□□□ -2.29
PCDHA1Q9Y5I3 SNORD36A-201ENST00000362874 73 ntBASIC0.72□□□□□ -2.29
PCDHA1Q9Y5I3 RNU6-44P-201ENST00000384045 107 ntBASIC0.72□□□□□ -2.29
PCDHA1Q9Y5I3 MIR4777-201ENST00000583710 86 ntBASIC0.72□□□□□ -2.29
PCDHA1Q9Y5I3 MIR6513-201ENST00000621188 64 ntBASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 189.2 ms