Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 RNU6-1144P-201ENST00000384247 104 ntBASIC0.64□□□□□ -2.31
DDX56Q9NY93 RNU6-476P-201ENST00000384726 107 ntBASIC0.64□□□□□ -2.31
DDX56Q9NY93 MIR508-201ENST00000384857 115 ntBASIC0.64□□□□□ -2.31
DDX56Q9NY93 RNU6-1064P-201ENST00000410626 104 ntBASIC0.64□□□□□ -2.31
DDX56Q9NY93 MIR5009-201ENST00000578736 100 ntBASIC0.64□□□□□ -2.31
DDX56Q9NY93 RNU6-90P-201ENST00000606352 106 ntBASIC0.64□□□□□ -2.31
DDX56Q9NY93 RNU6-170P-201ENST00000362832 104 ntBASIC0.63□□□□□ -2.31
DDX56Q9NY93 Y_RNA.281-201ENST00000364774 94 ntBASIC0.63□□□□□ -2.31
DDX56Q9NY93 Y_RNA.508-201ENST00000384502 114 ntBASIC0.63□□□□□ -2.31
DDX56Q9NY93 SNORA19-201ENST00000384737 128 ntBASIC0.63□□□□□ -2.31
DDX56Q9NY93 MIR577-201ENST00000385196 96 ntBASIC0.63□□□□□ -2.31
DDX56Q9NY93 MIR548G-201ENST00000408442 89 ntBASIC0.63□□□□□ -2.31
DDX56Q9NY93 RNU2-51P-201ENST00000410708 197 ntBASIC0.63□□□□□ -2.31
DDX56Q9NY93 SNORD63B-201ENST00000411005 70 ntBASIC0.63□□□□□ -2.31
DDX56Q9NY93 AC244505.6-201ENST00000452829 130 ntBASIC0.63□□□□□ -2.31
DDX56Q9NY93 RNA5SP47-201ENST00000517230 109 ntBASIC0.63□□□□□ -2.31
DDX56Q9NY93 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.63□□□□□ -2.31
DDX56Q9NY93 MIR4639-201ENST00000584938 69 ntBASIC0.63□□□□□ -2.31
DDX56Q9NY93 AC244669.1-204ENST00000621564 178 ntBASIC0.63□□□□□ -2.31
DDX56Q9NY93 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.63□□□□□ -2.31
DDX56Q9NY93 SNORD115-24-201ENST00000363528 82 ntBASIC0.62□□□□□ -2.31
DDX56Q9NY93 MIR92A1-201ENST00000385233 78 ntBASIC0.62□□□□□ -2.31
DDX56Q9NY93 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.62□□□□□ -2.31
DDX56Q9NY93 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.62□□□□□ -2.31
DDX56Q9NY93 snoU13.18-201ENST00000459483 104 ntBASIC0.62□□□□□ -2.31
DDX56Q9NY93 RNU7-106P-201ENST00000459514 67 ntBASIC0.62□□□□□ -2.31
DDX56Q9NY93 Y_RNA.342-201ENST00000365352 113 ntBASIC0.61□□□□□ -2.31
DDX56Q9NY93 Y_RNA.355-201ENST00000365462 98 ntBASIC0.61□□□□□ -2.31
DDX56Q9NY93 SNORA8.2-201ENST00000384372 139 ntBASIC0.61□□□□□ -2.31
DDX56Q9NY93 RNU7-195P-201ENST00000458793 62 ntBASIC0.61□□□□□ -2.31
DDX56Q9NY93 RNU6-412P-201ENST00000516434 106 ntBASIC0.61□□□□□ -2.31
DDX56Q9NY93 MIR6129-201ENST00000616087 109 ntBASIC0.61□□□□□ -2.31
DDX56Q9NY93 uc_338.17-201ENST00000619633 179 ntBASIC0.61□□□□□ -2.31
DDX56Q9NY93 RNU6-1099P-201ENST00000363533 107 ntBASIC0.6□□□□□ -2.31
DDX56Q9NY93 MIR518A1-201ENST00000385068 85 ntBASIC0.6□□□□□ -2.31
DDX56Q9NY93 MIR599-201ENST00000385069 95 ntBASIC0.6□□□□□ -2.31
DDX56Q9NY93 RNA5SP268-201ENST00000516828 124 ntBASIC0.6□□□□□ -2.31
DDX56Q9NY93 SCARNA16.5-201ENST00000517114 183 ntBASIC0.6□□□□□ -2.31
DDX56Q9NY93 MIR5000-201ENST00000577717 103 ntBASIC0.6□□□□□ -2.31
DDX56Q9NY93 MIR4694-201ENST00000578534 80 ntBASIC0.6□□□□□ -2.31
DDX56Q9NY93 SNORA25.18-201ENST00000607153 114 ntBASIC0.6□□□□□ -2.31
DDX56Q9NY93 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.6□□□□□ -2.31
DDX56Q9NY93 RNU6-832P-201ENST00000363319 107 ntBASIC0.59□□□□□ -2.31
DDX56Q9NY93 Y_RNA.221-201ENST00000364248 96 ntBASIC0.59□□□□□ -2.31
DDX56Q9NY93 RNU6-1107P-201ENST00000364817 104 ntBASIC0.59□□□□□ -2.31
DDX56Q9NY93 Y_RNA.377-201ENST00000365644 108 ntBASIC0.59□□□□□ -2.31
DDX56Q9NY93 RNU6-1056P-201ENST00000383996 107 ntBASIC0.59□□□□□ -2.31
DDX56Q9NY93 MIR516A2-201ENST00000384888 90 ntBASIC0.59□□□□□ -2.31
DDX56Q9NY93 MIR516A1-201ENST00000385033 90 ntBASIC0.59□□□□□ -2.31
DDX56Q9NY93 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.58□□□□□ -2.32
DDX56Q9NY93 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.58□□□□□ -2.32
DDX56Q9NY93 RNY3P2-201ENST00000362918 102 ntBASIC0.58□□□□□ -2.32
DDX56Q9NY93 Y_RNA.173-201ENST00000363776 113 ntBASIC0.58□□□□□ -2.32
DDX56Q9NY93 Y_RNA.323-201ENST00000365157 109 ntBASIC0.58□□□□□ -2.32
DDX56Q9NY93 RNU6-1014P-201ENST00000383940 103 ntBASIC0.58□□□□□ -2.32
DDX56Q9NY93 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.58□□□□□ -2.32
DDX56Q9NY93 AC097635.1-201ENST00000450678 155 ntBASIC0.58□□□□□ -2.32
DDX56Q9NY93 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.58□□□□□ -2.32
DDX56Q9NY93 Y_RNA.809-201ENST00000516058 95 ntBASIC0.58□□□□□ -2.32
DDX56Q9NY93 MIR3613-201ENST00000579844 87 ntBASIC0.58□□□□□ -2.32
DDX56Q9NY93 AC096720.1-201ENST00000604441 183 ntBASIC0.58□□□□□ -2.32
DDX56Q9NY93 MIR6828-201ENST00000636181 60 ntBASIC0.58□□□□□ -2.32
DDX56Q9NY93 RNU6-834P-201ENST00000362367 110 ntBASIC0.57□□□□□ -2.32
DDX56Q9NY93 SNORD118-201ENST00000363593 134 ntBASIC0.57□□□□□ -2.32
DDX56Q9NY93 RNA5SP227-201ENST00000516184 113 ntBASIC0.57□□□□□ -2.32
DDX56Q9NY93 RNU7-161P-201ENST00000517289 62 ntBASIC0.57□□□□□ -2.32
DDX56Q9NY93 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.57□□□□□ -2.32
DDX56Q9NY93 AC090625.1-201ENST00000357130 210 ntBASIC0.56□□□□□ -2.32
DDX56Q9NY93 MIR519A1-201ENST00000385257 85 ntBASIC0.56□□□□□ -2.32
DDX56Q9NY93 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.56□□□□□ -2.32
DDX56Q9NY93 RNU6-863P-201ENST00000515989 104 ntBASIC0.56□□□□□ -2.32
DDX56Q9NY93 AC141557.1-201ENST00000540982 400 ntBASIC0.56□□□□□ -2.32
DDX56Q9NY93 MIR4714-201ENST00000580728 77 ntBASIC0.56□□□□□ -2.32
DDX56Q9NY93 AC022709.1-201ENST00000615967 87 ntBASIC0.56□□□□□ -2.32
DDX56Q9NY93 Y_RNA.118-201ENST00000363300 101 ntBASIC0.55□□□□□ -2.32
DDX56Q9NY93 SNORA68.3-201ENST00000515906 83 ntBASIC0.55□□□□□ -2.32
DDX56Q9NY93 MIR7107-201ENST00000611489 80 ntBASIC0.55□□□□□ -2.32
DDX56Q9NY93 AC091304.10-201ENST00000641554 121 ntBASIC0.55□□□□□ -2.32
DDX56Q9NY93 Y_RNA.57-201ENST00000362806 113 ntBASIC0.54□□□□□ -2.32
DDX56Q9NY93 RNU6-1163P-201ENST00000364516 107 ntBASIC0.54□□□□□ -2.32
DDX56Q9NY93 RNU6-716P-201ENST00000365621 103 ntBASIC0.54□□□□□ -2.32
DDX56Q9NY93 AC098934.3-201ENST00000430450 190 ntBASIC0.54□□□□□ -2.32
DDX56Q9NY93 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.54□□□□□ -2.32
DDX56Q9NY93 RNU7-104P-201ENST00000459398 79 ntBASIC0.54□□□□□ -2.32
DDX56Q9NY93 Y_RNA.659-201ENST00000515994 113 ntBASIC0.54□□□□□ -2.32
DDX56Q9NY93 U2.22-201ENST00000636441 106 ntBASIC0.54□□□□□ -2.32
DDX56Q9NY93 RNU6-1260P-201ENST00000362944 107 ntBASIC0.53□□□□□ -2.32
DDX56Q9NY93 RNA5SP403-201ENST00000363598 108 ntBASIC0.53□□□□□ -2.32
DDX56Q9NY93 RNU6-524P-201ENST00000384270 107 ntBASIC0.53□□□□□ -2.32
DDX56Q9NY93 AC109327.2-201ENST00000448339 378 ntBASIC0.53□□□□□ -2.32
DDX56Q9NY93 AL157398.1-201ENST00000452981 186 ntBASIC0.53□□□□□ -2.32
DDX56Q9NY93 MIRLET7D-201ENST00000362263 87 ntBASIC0.52□□□□□ -2.33
DDX56Q9NY93 Y_RNA.163-201ENST00000363702 113 ntBASIC0.52□□□□□ -2.33
DDX56Q9NY93 RNU6-1081P-201ENST00000384537 107 ntBASIC0.52□□□□□ -2.33
DDX56Q9NY93 RNU6-1254P-201ENST00000391266 104 ntBASIC0.52□□□□□ -2.33
DDX56Q9NY93 RNU6-86P-201ENST00000606534 107 ntBASIC0.52□□□□□ -2.33
DDX56Q9NY93 MIR6515-201ENST00000619843 57 ntBASIC0.52□□□□□ -2.33
DDX56Q9NY93 RNA5SP347-201ENST00000362445 119 ntBASIC0.51□□□□□ -2.33
DDX56Q9NY93 RNU6-726P-201ENST00000364680 107 ntBASIC0.51□□□□□ -2.33
DDX56Q9NY93 Y_RNA.273-201ENST00000364703 102 ntBASIC0.51□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 1889.5 ms