Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RNU6-537P-201ENST00000517277 103 ntBASIC0.96□□□□□ -2.26
TDP1Q9NUW8 MIR6515-201ENST00000619843 57 ntBASIC0.96□□□□□ -2.26
TDP1Q9NUW8 RNU6-766P-201ENST00000362478 107 ntBASIC0.95□□□□□ -2.26
TDP1Q9NUW8 Y_RNA.81-201ENST00000362997 102 ntBASIC0.95□□□□□ -2.26
TDP1Q9NUW8 Y_RNA.173-201ENST00000363776 113 ntBASIC0.95□□□□□ -2.26
TDP1Q9NUW8 SNORD45B-201ENST00000364617 72 ntBASIC0.95□□□□□ -2.26
TDP1Q9NUW8 RNU6-1187P-201ENST00000364771 110 ntBASIC0.95□□□□□ -2.26
TDP1Q9NUW8 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.95□□□□□ -2.26
TDP1Q9NUW8 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.95□□□□□ -2.26
TDP1Q9NUW8 ACA64.5-201ENST00000516207 127 ntBASIC0.95□□□□□ -2.26
TDP1Q9NUW8 MIR3612-201ENST00000579753 87 ntBASIC0.95□□□□□ -2.26
TDP1Q9NUW8 MIR548H5-201ENST00000580314 60 ntBASIC0.95□□□□□ -2.26
TDP1Q9NUW8 uc_338.16-201ENST00000621804 95 ntBASIC0.95□□□□□ -2.26
TDP1Q9NUW8 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.95□□□□□ -2.26
TDP1Q9NUW8 Y_RNA.32-201ENST00000362589 110 ntBASIC0.94□□□□□ -2.26
TDP1Q9NUW8 RNU6-1163P-201ENST00000364516 107 ntBASIC0.94□□□□□ -2.26
TDP1Q9NUW8 AC004941.2-201ENST00000427009 228 ntBASIC0.94□□□□□ -2.26
TDP1Q9NUW8 SNORA31.14-201ENST00000516728 116 ntBASIC0.94□□□□□ -2.26
TDP1Q9NUW8 AC091304.10-201ENST00000641554 121 ntBASIC0.94□□□□□ -2.26
TDP1Q9NUW8 RNA5SP245-201ENST00000364239 121 ntBASIC0.93□□□□□ -2.26
TDP1Q9NUW8 RNA5SP117-201ENST00000365294 118 ntBASIC0.93□□□□□ -2.26
TDP1Q9NUW8 Y_RNA.567-201ENST00000384736 106 ntBASIC0.93□□□□□ -2.26
TDP1Q9NUW8 MIR608-201ENST00000384820 100 ntBASIC0.93□□□□□ -2.26
TDP1Q9NUW8 AC092628.1-201ENST00000436250 252 ntBASIC0.93□□□□□ -2.26
TDP1Q9NUW8 AC109327.2-201ENST00000448339 378 ntBASIC0.93□□□□□ -2.26
TDP1Q9NUW8 SCARNA23-201ENST00000516060 130 ntBASIC0.93□□□□□ -2.26
TDP1Q9NUW8 CYP3A137P-201ENST00000562436 69 ntBASIC0.93□□□□□ -2.26
TDP1Q9NUW8 RNU7-10P-201ENST00000607194 63 ntBASIC0.93□□□□□ -2.26
TDP1Q9NUW8 RNU6-170P-201ENST00000362832 104 ntBASIC0.92□□□□□ -2.26
TDP1Q9NUW8 Y_RNA.95-201ENST00000363079 95 ntBASIC0.92□□□□□ -2.26
TDP1Q9NUW8 Y_RNA.174-201ENST00000363781 105 ntBASIC0.92□□□□□ -2.26
TDP1Q9NUW8 RNU6-147P-201ENST00000383983 107 ntBASIC0.92□□□□□ -2.26
TDP1Q9NUW8 MIR635-201ENST00000384830 98 ntBASIC0.92□□□□□ -2.26
TDP1Q9NUW8 RPL39P28-201ENST00000465655 155 ntBASIC0.92□□□□□ -2.26
TDP1Q9NUW8 TRAJ51-201ENST00000504127 63 ntBASIC0.92□□□□□ -2.26
TDP1Q9NUW8 RNU6-795P-201ENST00000516323 103 ntBASIC0.92□□□□□ -2.26
TDP1Q9NUW8 MIR4698-201ENST00000577795 80 ntBASIC0.92□□□□□ -2.26
TDP1Q9NUW8 AC012531.4-201ENST00000616509 177 ntBASIC0.92□□□□□ -2.26
TDP1Q9NUW8 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.92□□□□□ -2.26
TDP1Q9NUW8 RNU6-109P-201ENST00000516364 107 ntBASIC0.91□□□□□ -2.26
TDP1Q9NUW8 RNU6-184P-201ENST00000516514 107 ntBASIC0.91□□□□□ -2.26
TDP1Q9NUW8 MIR4439-201ENST00000583746 80 ntBASIC0.91□□□□□ -2.26
TDP1Q9NUW8 MIR548Z-201ENST00000584743 97 ntBASIC0.91□□□□□ -2.26
TDP1Q9NUW8 AC103810.9-201ENST00000606688 112 ntBASIC0.91□□□□□ -2.26
TDP1Q9NUW8 Y_RNA.818-201ENST00000618813 71 ntBASIC0.91□□□□□ -2.26
TDP1Q9NUW8 Y_RNA.342-201ENST00000365352 113 ntBASIC0.9□□□□□ -2.27
TDP1Q9NUW8 SNORD63B-201ENST00000411005 70 ntBASIC0.9□□□□□ -2.27
TDP1Q9NUW8 MIR5000-201ENST00000577717 103 ntBASIC0.9□□□□□ -2.27
TDP1Q9NUW8 MIR4777-201ENST00000583710 86 ntBASIC0.9□□□□□ -2.27
TDP1Q9NUW8 MIR18A-201ENST00000362310 71 ntBASIC0.89□□□□□ -2.27
TDP1Q9NUW8 RNU6-1244P-201ENST00000363614 108 ntBASIC0.89□□□□□ -2.27
TDP1Q9NUW8 RNU6-153P-201ENST00000364422 104 ntBASIC0.89□□□□□ -2.27
TDP1Q9NUW8 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.89□□□□□ -2.27
TDP1Q9NUW8 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.89□□□□□ -2.27
TDP1Q9NUW8 RNA5SP222-201ENST00000411039 105 ntBASIC0.89□□□□□ -2.27
TDP1Q9NUW8 AC138907.6-201ENST00000568401 126 ntBASIC0.89□□□□□ -2.27
TDP1Q9NUW8 AC138869.1-201ENST00000568623 124 ntBASIC0.89□□□□□ -2.27
TDP1Q9NUW8 RNU6-86P-201ENST00000606534 107 ntBASIC0.89□□□□□ -2.27
TDP1Q9NUW8 Y_RNA.57-201ENST00000362806 113 ntBASIC0.88□□□□□ -2.27
TDP1Q9NUW8 Y_RNA.467-201ENST00000384297 102 ntBASIC0.88□□□□□ -2.27
TDP1Q9NUW8 Y_RNA.544-201ENST00000384650 113 ntBASIC0.88□□□□□ -2.27
TDP1Q9NUW8 MIR644A-201ENST00000385262 94 ntBASIC0.88□□□□□ -2.27
TDP1Q9NUW8 RNU7-106P-201ENST00000459514 67 ntBASIC0.88□□□□□ -2.27
TDP1Q9NUW8 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.88□□□□□ -2.27
TDP1Q9NUW8 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.88□□□□□ -2.27
TDP1Q9NUW8 MIR598-201ENST00000384868 97 ntBASIC0.87□□□□□ -2.27
TDP1Q9NUW8 MIR516A2-201ENST00000384888 90 ntBASIC0.87□□□□□ -2.27
TDP1Q9NUW8 MIR516A1-201ENST00000385033 90 ntBASIC0.87□□□□□ -2.27
TDP1Q9NUW8 AC244505.6-201ENST00000452829 130 ntBASIC0.87□□□□□ -2.27
TDP1Q9NUW8 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.87□□□□□ -2.27
TDP1Q9NUW8 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.87□□□□□ -2.27
TDP1Q9NUW8 Y_RNA.107-201ENST00000363190 121 ntBASIC0.86□□□□□ -2.27
TDP1Q9NUW8 RNU4-45P-201ENST00000365469 141 ntBASIC0.86□□□□□ -2.27
TDP1Q9NUW8 Y_RNA.466-201ENST00000384294 113 ntBASIC0.86□□□□□ -2.27
TDP1Q9NUW8 Y_RNA.540-201ENST00000384638 111 ntBASIC0.86□□□□□ -2.27
TDP1Q9NUW8 MIR519A1-201ENST00000385257 85 ntBASIC0.86□□□□□ -2.27
TDP1Q9NUW8 RNU7-195P-201ENST00000458793 62 ntBASIC0.86□□□□□ -2.27
TDP1Q9NUW8 PSMC1P5-201ENST00000512850 177 ntBASIC0.86□□□□□ -2.27
TDP1Q9NUW8 RNU6-469P-201ENST00000516253 101 ntBASIC0.86□□□□□ -2.27
TDP1Q9NUW8 MIR3678-201ENST00000578455 94 ntBASIC0.86□□□□□ -2.27
TDP1Q9NUW8 Y_RNA.93-201ENST00000363066 109 ntBASIC0.85□□□□□ -2.27
TDP1Q9NUW8 RNU6-1125P-201ENST00000363601 107 ntBASIC0.85□□□□□ -2.27
TDP1Q9NUW8 RNU6-32P-201ENST00000383948 107 ntBASIC0.85□□□□□ -2.27
TDP1Q9NUW8 RNU6-13P-201ENST00000384248 107 ntBASIC0.85□□□□□ -2.27
TDP1Q9NUW8 RNU6-480P-201ENST00000384332 107 ntBASIC0.85□□□□□ -2.27
TDP1Q9NUW8 RNU6-12P-201ENST00000384604 107 ntBASIC0.85□□□□□ -2.27
TDP1Q9NUW8 RNU6-813P-201ENST00000384691 107 ntBASIC0.85□□□□□ -2.27
TDP1Q9NUW8 RNU6-41P-201ENST00000384741 107 ntBASIC0.85□□□□□ -2.27
TDP1Q9NUW8 MIR181B2-201ENST00000385004 89 ntBASIC0.85□□□□□ -2.27
TDP1Q9NUW8 AC097635.1-201ENST00000450678 155 ntBASIC0.85□□□□□ -2.27
TDP1Q9NUW8 PVT1_3.1-201ENST00000620853 95 ntBASIC0.85□□□□□ -2.27
TDP1Q9NUW8 Y_RNA.495-201ENST00000384435 112 ntBASIC0.84□□□□□ -2.27
TDP1Q9NUW8 MIR599-201ENST00000385069 95 ntBASIC0.84□□□□□ -2.27
TDP1Q9NUW8 Y_RNA.809-201ENST00000516058 95 ntBASIC0.84□□□□□ -2.27
TDP1Q9NUW8 RNY1P8-201ENST00000383970 114 ntBASIC0.83□□□□□ -2.28
TDP1Q9NUW8 RNU6-1254P-201ENST00000391266 104 ntBASIC0.83□□□□□ -2.28
TDP1Q9NUW8 RNA5SP436-201ENST00000516020 115 ntBASIC0.83□□□□□ -2.28
TDP1Q9NUW8 RNU6-135P-201ENST00000516769 101 ntBASIC0.83□□□□□ -2.28
TDP1Q9NUW8 MIR4653-201ENST00000585107 83 ntBASIC0.83□□□□□ -2.28
TDP1Q9NUW8 AC103810.7-201ENST00000607821 91 ntBASIC0.83□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 167.5 ms