Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
TRAIPQ9BWF2 RNU6-756P-201ENST00000383997 107 ntBASIC1.2□□□□□ -2.22
TRAIPQ9BWF2 RNU6-106P-201ENST00000384405 107 ntBASIC1.2□□□□□ -2.22
TRAIPQ9BWF2 MIR4439-201ENST00000583746 80 ntBASIC1.2□□□□□ -2.22
TRAIPQ9BWF2 Y_RNA.57-201ENST00000362806 113 ntBASIC1.19□□□□□ -2.22
TRAIPQ9BWF2 RNU6-554P-201ENST00000410466 106 ntBASIC1.19□□□□□ -2.22
TRAIPQ9BWF2 MIR3678-201ENST00000578455 94 ntBASIC1.19□□□□□ -2.22
TRAIPQ9BWF2 Y_RNA.96-201ENST00000363092 109 ntBASIC1.18□□□□□ -2.22
TRAIPQ9BWF2 SNORD63B-201ENST00000411005 70 ntBASIC1.18□□□□□ -2.22
TRAIPQ9BWF2 SCARNA23-201ENST00000516060 130 ntBASIC1.18□□□□□ -2.22
TRAIPQ9BWF2 MIR644A-201ENST00000385262 94 ntBASIC1.17□□□□□ -2.22
TRAIPQ9BWF2 Y_RNA.173-201ENST00000363776 113 ntBASIC1.16□□□□□ -2.22
TRAIPQ9BWF2 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.16□□□□□ -2.22
TRAIPQ9BWF2 TRAJ51-201ENST00000504127 63 ntBASIC1.16□□□□□ -2.22
TRAIPQ9BWF2 RNU6-243P-201ENST00000391140 107 ntBASIC1.15□□□□□ -2.23
TRAIPQ9BWF2 AC097635.1-201ENST00000450678 155 ntBASIC1.15□□□□□ -2.23
TRAIPQ9BWF2 Y_RNA.809-201ENST00000516058 95 ntBASIC1.15□□□□□ -2.23
TRAIPQ9BWF2 RNU6-904P-201ENST00000516206 101 ntBASIC1.15□□□□□ -2.23
TRAIPQ9BWF2 RNU6-766P-201ENST00000362478 107 ntBASIC1.14□□□□□ -2.23
TRAIPQ9BWF2 Y_RNA.95-201ENST00000363079 95 ntBASIC1.14□□□□□ -2.23
TRAIPQ9BWF2 AC109327.2-201ENST00000448339 378 ntBASIC1.14□□□□□ -2.23
TRAIPQ9BWF2 SNORD114-27-201ENST00000363766 70 ntBASIC1.13□□□□□ -2.23
TRAIPQ9BWF2 RNA5SP245-201ENST00000364239 121 ntBASIC1.13□□□□□ -2.23
TRAIPQ9BWF2 MIR520E-201ENST00000384867 87 ntBASIC1.13□□□□□ -2.23
TRAIPQ9BWF2 MIR599-201ENST00000385069 95 ntBASIC1.13□□□□□ -2.23
TRAIPQ9BWF2 MIR140-201ENST00000385282 100 ntBASIC1.13□□□□□ -2.23
TRAIPQ9BWF2 RNU6-1254P-201ENST00000391266 104 ntBASIC1.13□□□□□ -2.23
TRAIPQ9BWF2 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.13□□□□□ -2.23
TRAIPQ9BWF2 SNORD114-21-201ENST00000606412 72 ntBASIC1.13□□□□□ -2.23
TRAIPQ9BWF2 RNU6-86P-201ENST00000606534 107 ntBASIC1.13□□□□□ -2.23
TRAIPQ9BWF2 MIR7111-201ENST00000619751 72 ntBASIC1.13□□□□□ -2.23
TRAIPQ9BWF2 RNU6-755P-201ENST00000364400 103 ntBASIC1.12□□□□□ -2.23
TRAIPQ9BWF2 RNU6-1187P-201ENST00000364771 110 ntBASIC1.12□□□□□ -2.23
TRAIPQ9BWF2 RNU6-44P-201ENST00000384045 107 ntBASIC1.12□□□□□ -2.23
TRAIPQ9BWF2 Y_RNA.544-201ENST00000384650 113 ntBASIC1.12□□□□□ -2.23
TRAIPQ9BWF2 AC244505.6-201ENST00000452829 130 ntBASIC1.12□□□□□ -2.23
TRAIPQ9BWF2 snoU13.18-201ENST00000459483 104 ntBASIC1.12□□□□□ -2.23
TRAIPQ9BWF2 MIR4653-201ENST00000585107 83 ntBASIC1.12□□□□□ -2.23
TRAIPQ9BWF2 Y_RNA.818-201ENST00000618813 71 ntBASIC1.12□□□□□ -2.23
TRAIPQ9BWF2 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.12□□□□□ -2.23
TRAIPQ9BWF2 MIR373-201ENST00000362273 69 ntBASIC1.11□□□□□ -2.23
TRAIPQ9BWF2 SNORA63.4-201ENST00000362763 126 ntBASIC1.11□□□□□ -2.23
TRAIPQ9BWF2 MIR516A2-201ENST00000384888 90 ntBASIC1.11□□□□□ -2.23
TRAIPQ9BWF2 MIR516A1-201ENST00000385033 90 ntBASIC1.11□□□□□ -2.23
TRAIPQ9BWF2 MIR519A1-201ENST00000385257 85 ntBASIC1.11□□□□□ -2.23
TRAIPQ9BWF2 MIR4639-201ENST00000584938 69 ntBASIC1.11□□□□□ -2.23
TRAIPQ9BWF2 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.11□□□□□ -2.23
TRAIPQ9BWF2 SNORD115-24-201ENST00000363528 82 ntBASIC1.1□□□□□ -2.23
TRAIPQ9BWF2 RNU4-38P-201ENST00000364472 129 ntBASIC1.1□□□□□ -2.23
TRAIPQ9BWF2 RNU6-1163P-201ENST00000364516 107 ntBASIC1.1□□□□□ -2.23
TRAIPQ9BWF2 SNORA19.1-201ENST00000410656 129 ntBASIC1.1□□□□□ -2.23
TRAIPQ9BWF2 RNU7-195P-201ENST00000458793 62 ntBASIC1.1□□□□□ -2.23
TRAIPQ9BWF2 MIR3613-201ENST00000579844 87 ntBASIC1.1□□□□□ -2.23
TRAIPQ9BWF2 MIR6857-201ENST00000613267 93 ntBASIC1.1□□□□□ -2.23
TRAIPQ9BWF2 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
TRAIPQ9BWF2 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
TRAIPQ9BWF2 RNU6-813P-201ENST00000384691 107 ntBASIC1.09□□□□□ -2.23
TRAIPQ9BWF2 MIR590-201ENST00000385008 97 ntBASIC1.09□□□□□ -2.23
TRAIPQ9BWF2 MIR532-201ENST00000385025 91 ntBASIC1.09□□□□□ -2.23
TRAIPQ9BWF2 RPL39P28-201ENST00000465655 155 ntBASIC1.09□□□□□ -2.23
TRAIPQ9BWF2 AL590095.2-201ENST00000604136 117 ntBASIC1.09□□□□□ -2.23
TRAIPQ9BWF2 AC103810.9-201ENST00000606688 112 ntBASIC1.09□□□□□ -2.23
TRAIPQ9BWF2 MIR450A1-201ENST00000362262 91 ntBASIC1.08□□□□□ -2.24
TRAIPQ9BWF2 MIR489-201ENST00000384923 84 ntBASIC1.08□□□□□ -2.24
TRAIPQ9BWF2 RNA5SP220-201ENST00000516298 104 ntBASIC1.08□□□□□ -2.24
TRAIPQ9BWF2 RNU6-795P-201ENST00000516323 103 ntBASIC1.08□□□□□ -2.24
TRAIPQ9BWF2 Y_RNA.107-201ENST00000363190 121 ntBASIC1.07□□□□□ -2.24
TRAIPQ9BWF2 SNORD18A-201ENST00000363753 72 ntBASIC1.07□□□□□ -2.24
TRAIPQ9BWF2 MIR548L-201ENST00000408303 86 ntBASIC1.07□□□□□ -2.24
TRAIPQ9BWF2 MIR6788-201ENST00000618842 66 ntBASIC1.07□□□□□ -2.24
TRAIPQ9BWF2 AC092634.7-201ENST00000621022 103 ntBASIC1.07□□□□□ -2.24
TRAIPQ9BWF2 Y_RNA.118-201ENST00000363300 101 ntBASIC1.06□□□□□ -2.24
TRAIPQ9BWF2 Y_RNA.221-201ENST00000364248 96 ntBASIC1.06□□□□□ -2.24
TRAIPQ9BWF2 RNU6-42P-201ENST00000384165 107 ntBASIC1.06□□□□□ -2.24
TRAIPQ9BWF2 RNA5SP94-201ENST00000516917 108 ntBASIC1.06□□□□□ -2.24
TRAIPQ9BWF2 RNU6-1260P-201ENST00000362944 107 ntBASIC1.05□□□□□ -2.24
TRAIPQ9BWF2 Y_RNA.93-201ENST00000363066 109 ntBASIC1.05□□□□□ -2.24
TRAIPQ9BWF2 RNU6-1244P-201ENST00000363614 108 ntBASIC1.05□□□□□ -2.24
TRAIPQ9BWF2 SNORD28-201ENST00000384706 75 ntBASIC1.05□□□□□ -2.24
TRAIPQ9BWF2 MIR181B2-201ENST00000385004 89 ntBASIC1.05□□□□□ -2.24
TRAIPQ9BWF2 RNU7-106P-201ENST00000459514 67 ntBASIC1.05□□□□□ -2.24
TRAIPQ9BWF2 RPS29P1-201ENST00000465274 159 ntBASIC1.05□□□□□ -2.24
TRAIPQ9BWF2 Y_RNA.705-201ENST00000516862 110 ntBASIC1.05□□□□□ -2.24
TRAIPQ9BWF2 AC022709.1-201ENST00000615967 87 ntBASIC1.05□□□□□ -2.24
TRAIPQ9BWF2 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
TRAIPQ9BWF2 AL078603.1-201ENST00000603824 313 ntBASIC1.04□□□□□ -2.24
TRAIPQ9BWF2 AC012531.4-201ENST00000616509 177 ntBASIC1.04□□□□□ -2.24
TRAIPQ9BWF2 AC244669.1-204ENST00000621564 178 ntBASIC1.04□□□□□ -2.24
TRAIPQ9BWF2 MIR2052-201ENST00000636055 55 ntBASIC1.04□□□□□ -2.24
TRAIPQ9BWF2 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.04□□□□□ -2.24
TRAIPQ9BWF2 AC091304.10-201ENST00000641554 121 ntBASIC1.04□□□□□ -2.24
TRAIPQ9BWF2 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
TRAIPQ9BWF2 RNU6-972P-201ENST00000391208 107 ntBASIC1.03□□□□□ -2.24
TRAIPQ9BWF2 MIR548J-201ENST00000408833 112 ntBASIC1.03□□□□□ -2.24
TRAIPQ9BWF2 SNORD71-201ENST00000411292 86 ntBASIC1.03□□□□□ -2.24
TRAIPQ9BWF2 RNU6-1223P-201ENST00000517124 104 ntBASIC1.03□□□□□ -2.24
TRAIPQ9BWF2 MIR151B-201ENST00000584249 96 ntBASIC1.03□□□□□ -2.24
TRAIPQ9BWF2 RNU6-524P-201ENST00000384270 107 ntBASIC1.02□□□□□ -2.25
TRAIPQ9BWF2 SCARNA16.5-201ENST00000517114 183 ntBASIC1.02□□□□□ -2.25
TRAIPQ9BWF2 MIR3973-201ENST00000579824 107 ntBASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 172.2 ms