Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL512310.12-203ENST00000640543 90 ntBASIC0.31□□□□□ -2.36
NKX3-1Q99801 AC091304.10-201ENST00000641554 121 ntBASIC0.31□□□□□ -2.36
NKX3-1Q99801 SNORD50.2-201ENST00000365465 70 ntBASIC0.3□□□□□ -2.36
NKX3-1Q99801 VTRNA1-3-201ENST00000365645 89 ntBASIC0.3□□□□□ -2.36
NKX3-1Q99801 Y_RNA.549-201ENST00000384657 102 ntBASIC0.3□□□□□ -2.36
NKX3-1Q99801 MIR599-201ENST00000385069 95 ntBASIC0.3□□□□□ -2.36
NKX3-1Q99801 MIR548I2-201ENST00000408348 149 ntBASIC0.3□□□□□ -2.36
NKX3-1Q99801 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.3□□□□□ -2.36
NKX3-1Q99801 SNORD63B-201ENST00000411005 70 ntBASIC0.3□□□□□ -2.36
NKX3-1Q99801 RNU7-195P-201ENST00000458793 62 ntBASIC0.3□□□□□ -2.36
NKX3-1Q99801 RNU6-659P-201ENST00000516454 104 ntBASIC0.3□□□□□ -2.36
NKX3-1Q99801 RNU6-850P-201ENST00000516934 103 ntBASIC0.3□□□□□ -2.36
NKX3-1Q99801 MIR4752-201ENST00000579672 72 ntBASIC0.3□□□□□ -2.36
NKX3-1Q99801 AL035470.1-201ENST00000622571 220 ntBASIC0.3□□□□□ -2.36
NKX3-1Q99801 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.3□□□□□ -2.36
NKX3-1Q99801 MIR3914-2-201ENST00000637339 95 ntBASIC0.3□□□□□ -2.36
NKX3-1Q99801 Y_RNA.155-201ENST00000363632 101 ntBASIC0.29□□□□□ -2.36
NKX3-1Q99801 RNU6-816P-201ENST00000390914 107 ntBASIC0.29□□□□□ -2.36
NKX3-1Q99801 RNU6-1268P-201ENST00000391214 107 ntBASIC0.29□□□□□ -2.36
NKX3-1Q99801 RNU6-1239P-201ENST00000391310 107 ntBASIC0.29□□□□□ -2.36
NKX3-1Q99801 RNU7-104P-201ENST00000459398 79 ntBASIC0.29□□□□□ -2.36
NKX3-1Q99801 SNORD33.1-201ENST00000516213 88 ntBASIC0.29□□□□□ -2.36
NKX3-1Q99801 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.29□□□□□ -2.36
NKX3-1Q99801 RNU7-10P-201ENST00000607194 63 ntBASIC0.29□□□□□ -2.36
NKX3-1Q99801 MIR6755-201ENST00000619993 66 ntBASIC0.29□□□□□ -2.36
NKX3-1Q99801 RNU6-1313P-201ENST00000362622 102 ntBASIC0.28□□□□□ -2.36
NKX3-1Q99801 RNU6-170P-201ENST00000362832 104 ntBASIC0.28□□□□□ -2.36
NKX3-1Q99801 RNA5SP403-201ENST00000363598 108 ntBASIC0.28□□□□□ -2.36
NKX3-1Q99801 RNU6-726P-201ENST00000364680 107 ntBASIC0.28□□□□□ -2.36
NKX3-1Q99801 RNU6-815P-201ENST00000384080 113 ntBASIC0.28□□□□□ -2.36
NKX3-1Q99801 RNU2-59P-201ENST00000410482 191 ntBASIC0.28□□□□□ -2.36
NKX3-1Q99801 Y_RNA.712-201ENST00000517011 92 ntBASIC0.28□□□□□ -2.36
NKX3-1Q99801 MTND5P40-201ENST00000559945 246 ntBASIC0.28□□□□□ -2.36
NKX3-1Q99801 Y_RNA.35-201ENST00000362601 101 ntBASIC0.27□□□□□ -2.37
NKX3-1Q99801 RNU6-409P-201ENST00000384114 104 ntBASIC0.27□□□□□ -2.37
NKX3-1Q99801 RNU6-571P-201ENST00000384128 107 ntBASIC0.27□□□□□ -2.37
NKX3-1Q99801 MIR516A2-201ENST00000384888 90 ntBASIC0.27□□□□□ -2.37
NKX3-1Q99801 MIR516A1-201ENST00000385033 90 ntBASIC0.27□□□□□ -2.37
NKX3-1Q99801 MIR548A1-201ENST00000385041 97 ntBASIC0.27□□□□□ -2.37
NKX3-1Q99801 Y_RNA.649-201ENST00000459077 103 ntBASIC0.27□□□□□ -2.37
NKX3-1Q99801 AC108740.1-201ENST00000498629 225 ntBASIC0.27□□□□□ -2.37
NKX3-1Q99801 RNU6-863P-201ENST00000515989 104 ntBASIC0.27□□□□□ -2.37
NKX3-1Q99801 AC007012.1-201ENST00000567192 175 ntBASIC0.27□□□□□ -2.37
NKX3-1Q99801 AL162726.3-218ENST00000636401 95 ntBASIC0.27□□□□□ -2.37
NKX3-1Q99801 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC0.27□□□□□ -2.37
NKX3-1Q99801 Y_RNA.85-201ENST00000363014 111 ntBASIC0.26□□□□□ -2.37
NKX3-1Q99801 Y_RNA.423-201ENST00000384057 113 ntBASIC0.26□□□□□ -2.37
NKX3-1Q99801 MIR548M-201ENST00000408260 86 ntBASIC0.26□□□□□ -2.37
NKX3-1Q99801 SPINT5P-201ENST00000448174 155 ntBASIC0.26□□□□□ -2.37
NKX3-1Q99801 AC097635.1-201ENST00000450678 155 ntBASIC0.26□□□□□ -2.37
NKX3-1Q99801 Y_RNA.809-201ENST00000516058 95 ntBASIC0.26□□□□□ -2.37
NKX3-1Q99801 RNA5SP134-201ENST00000516492 96 ntBASIC0.26□□□□□ -2.37
NKX3-1Q99801 MIR4514-201ENST00000581410 57 ntBASIC0.26□□□□□ -2.37
NKX3-1Q99801 RNU1-29P-201ENST00000606574 126 ntBASIC0.26□□□□□ -2.37
NKX3-1Q99801 RNA5SP62-201ENST00000363457 110 ntBASIC0.25□□□□□ -2.37
NKX3-1Q99801 Y_RNA.261-201ENST00000364631 102 ntBASIC0.25□□□□□ -2.37
NKX3-1Q99801 RNU6-1327P-201ENST00000365302 105 ntBASIC0.25□□□□□ -2.37
NKX3-1Q99801 Y_RNA.342-201ENST00000365352 113 ntBASIC0.25□□□□□ -2.37
NKX3-1Q99801 RNU6-1126P-201ENST00000384002 107 ntBASIC0.25□□□□□ -2.37
NKX3-1Q99801 Y_RNA.507-201ENST00000384500 99 ntBASIC0.25□□□□□ -2.37
NKX3-1Q99801 MIR519A1-201ENST00000385257 85 ntBASIC0.25□□□□□ -2.37
NKX3-1Q99801 RNU6-1232P-201ENST00000516299 86 ntBASIC0.25□□□□□ -2.37
NKX3-1Q99801 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.25□□□□□ -2.37
NKX3-1Q99801 SNORD116-14-201ENST00000383894 92 ntBASIC0.24□□□□□ -2.37
NKX3-1Q99801 SNORD116-17-201ENST00000383929 92 ntBASIC0.24□□□□□ -2.37
NKX3-1Q99801 RNU6-1201P-201ENST00000384227 107 ntBASIC0.24□□□□□ -2.37
NKX3-1Q99801 RNU6-524P-201ENST00000384270 107 ntBASIC0.24□□□□□ -2.37
NKX3-1Q99801 SNORD116-15-201ENST00000384445 92 ntBASIC0.24□□□□□ -2.37
NKX3-1Q99801 SNORD38.2-201ENST00000384470 69 ntBASIC0.24□□□□□ -2.37
NKX3-1Q99801 SNORD116-19-201ENST00000384729 92 ntBASIC0.24□□□□□ -2.37
NKX3-1Q99801 MIR548L-201ENST00000408303 86 ntBASIC0.24□□□□□ -2.37
NKX3-1Q99801 MIR548G-201ENST00000408442 89 ntBASIC0.24□□□□□ -2.37
NKX3-1Q99801 RPL39P34-201ENST00000477141 156 ntBASIC0.24□□□□□ -2.37
NKX3-1Q99801 RNU6-1333P-201ENST00000516162 93 ntBASIC0.24□□□□□ -2.37
NKX3-1Q99801 RNU6-1018P-201ENST00000516577 106 ntBASIC0.24□□□□□ -2.37
NKX3-1Q99801 AC067863.3-201ENST00000624172 122 ntBASIC0.24□□□□□ -2.37
NKX3-1Q99801 RNA5SP325-201ENST00000363756 130 ntBASIC0.23□□□□□ -2.37
NKX3-1Q99801 SNORD38.1-201ENST00000363863 68 ntBASIC0.23□□□□□ -2.37
NKX3-1Q99801 RNU6-959P-201ENST00000384671 107 ntBASIC0.23□□□□□ -2.37
NKX3-1Q99801 AC073261.1-201ENST00000429409 121 ntBASIC0.23□□□□□ -2.37
NKX3-1Q99801 SNORA62.5-201ENST00000516634 120 ntBASIC0.23□□□□□ -2.37
NKX3-1Q99801 MIR4679-2-201ENST00000578358 77 ntBASIC0.23□□□□□ -2.37
NKX3-1Q99801 RNU6-90P-201ENST00000606352 106 ntBASIC0.23□□□□□ -2.37
NKX3-1Q99801 MIR924-201ENST00000638017 53 ntBASIC0.23□□□□□ -2.37
NKX3-1Q99801 RNU6-1260P-201ENST00000362944 107 ntBASIC0.22□□□□□ -2.37
NKX3-1Q99801 Y_RNA.353-201ENST00000365440 108 ntBASIC0.22□□□□□ -2.37
NKX3-1Q99801 MIR577-201ENST00000385196 96 ntBASIC0.22□□□□□ -2.37
NKX3-1Q99801 MIR548A3-201ENST00000385297 97 ntBASIC0.22□□□□□ -2.37
NKX3-1Q99801 RNU6-269P-201ENST00000391077 97 ntBASIC0.22□□□□□ -2.37
NKX3-1Q99801 AL442128.1-201ENST00000615151 90 ntBASIC0.22□□□□□ -2.37
NKX3-1Q99801 AL162376.1-201ENST00000624117 175 ntBASIC0.22□□□□□ -2.37
NKX3-1Q99801 Y_RNA.173-201ENST00000363776 113 ntBASIC0.21□□□□□ -2.38
NKX3-1Q99801 MIR1912-201ENST00000410389 80 ntBASIC0.21□□□□□ -2.38
NKX3-1Q99801 AL161932.1-201ENST00000437408 146 ntBASIC0.21□□□□□ -2.38
NKX3-1Q99801 AC068339.1-201ENST00000526965 141 ntBASIC0.21□□□□□ -2.38
NKX3-1Q99801 MIR3613-201ENST00000579844 87 ntBASIC0.21□□□□□ -2.38
NKX3-1Q99801 MIR3920-201ENST00000581751 86 ntBASIC0.21□□□□□ -2.38
NKX3-1Q99801 MIR5093-201ENST00000583199 100 ntBASIC0.21□□□□□ -2.38
NKX3-1Q99801 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.21□□□□□ -2.38
NKX3-1Q99801 SNORA70.25-201ENST00000612741 95 ntBASIC0.21□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 263.9 ms