Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 RNU7-95P-201ENST00000459222 64 ntBASIC0.84□□□□□ -2.27
CLRN3Q8NCR9 MIR4653-201ENST00000585107 83 ntBASIC0.84□□□□□ -2.27
CLRN3Q8NCR9 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.84□□□□□ -2.27
CLRN3Q8NCR9 RNA5SP432-201ENST00000362480 116 ntBASIC0.83□□□□□ -2.28
CLRN3Q8NCR9 Y_RNA.81-201ENST00000362997 102 ntBASIC0.83□□□□□ -2.28
CLRN3Q8NCR9 RNA5SP99-201ENST00000364020 114 ntBASIC0.83□□□□□ -2.28
CLRN3Q8NCR9 MIR516A2-201ENST00000384888 90 ntBASIC0.83□□□□□ -2.28
CLRN3Q8NCR9 MIR516A1-201ENST00000385033 90 ntBASIC0.83□□□□□ -2.28
CLRN3Q8NCR9 RNU6-243P-201ENST00000391140 107 ntBASIC0.83□□□□□ -2.28
CLRN3Q8NCR9 AP1B1P2-201ENST00000416196 106 ntBASIC0.83□□□□□ -2.28
CLRN3Q8NCR9 RNU7-195P-201ENST00000458793 62 ntBASIC0.83□□□□□ -2.28
CLRN3Q8NCR9 RNU6-795P-201ENST00000516323 103 ntBASIC0.83□□□□□ -2.28
CLRN3Q8NCR9 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.83□□□□□ -2.28
CLRN3Q8NCR9 MIR4769-201ENST00000584126 77 ntBASIC0.83□□□□□ -2.28
CLRN3Q8NCR9 MIR3660-201ENST00000584845 100 ntBASIC0.83□□□□□ -2.28
CLRN3Q8NCR9 RNU6-86P-201ENST00000606534 107 ntBASIC0.83□□□□□ -2.28
CLRN3Q8NCR9 AC091304.10-201ENST00000641554 121 ntBASIC0.83□□□□□ -2.28
CLRN3Q8NCR9 SNORD18A-201ENST00000363753 72 ntBASIC0.82□□□□□ -2.28
CLRN3Q8NCR9 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.82□□□□□ -2.28
CLRN3Q8NCR9 Y_RNA.705-201ENST00000516862 110 ntBASIC0.82□□□□□ -2.28
CLRN3Q8NCR9 RNU6-158P-201ENST00000517104 100 ntBASIC0.82□□□□□ -2.28
CLRN3Q8NCR9 MIR4777-201ENST00000583710 86 ntBASIC0.82□□□□□ -2.28
CLRN3Q8NCR9 MIR6078-201ENST00000611069 100 ntBASIC0.82□□□□□ -2.28
CLRN3Q8NCR9 AC012531.4-201ENST00000616509 177 ntBASIC0.82□□□□□ -2.28
CLRN3Q8NCR9 SNORD115-24-201ENST00000363528 82 ntBASIC0.81□□□□□ -2.28
CLRN3Q8NCR9 RNU6-32P-201ENST00000383948 107 ntBASIC0.81□□□□□ -2.28
CLRN3Q8NCR9 RNU6-13P-201ENST00000384248 107 ntBASIC0.81□□□□□ -2.28
CLRN3Q8NCR9 RNU6-12P-201ENST00000384604 107 ntBASIC0.81□□□□□ -2.28
CLRN3Q8NCR9 SNORD28-201ENST00000384706 75 ntBASIC0.81□□□□□ -2.28
CLRN3Q8NCR9 RNU6-41P-201ENST00000384741 107 ntBASIC0.81□□□□□ -2.28
CLRN3Q8NCR9 RNU7-106P-201ENST00000459514 67 ntBASIC0.81□□□□□ -2.28
CLRN3Q8NCR9 MIR2052-201ENST00000636055 55 ntBASIC0.81□□□□□ -2.28
CLRN3Q8NCR9 RNU6-147P-201ENST00000383983 107 ntBASIC0.8□□□□□ -2.28
CLRN3Q8NCR9 Y_RNA.466-201ENST00000384294 113 ntBASIC0.8□□□□□ -2.28
CLRN3Q8NCR9 MIR181B2-201ENST00000385004 89 ntBASIC0.8□□□□□ -2.28
CLRN3Q8NCR9 MIR146A-201ENST00000385201 99 ntBASIC0.8□□□□□ -2.28
CLRN3Q8NCR9 RNU6-972P-201ENST00000391208 107 ntBASIC0.8□□□□□ -2.28
CLRN3Q8NCR9 RNA5SP94-201ENST00000516917 108 ntBASIC0.8□□□□□ -2.28
CLRN3Q8NCR9 AL590095.2-201ENST00000604136 117 ntBASIC0.8□□□□□ -2.28
CLRN3Q8NCR9 Y_RNA.467-201ENST00000384297 102 ntBASIC0.79□□□□□ -2.28
CLRN3Q8NCR9 SCARNA16.5-201ENST00000517114 183 ntBASIC0.79□□□□□ -2.28
CLRN3Q8NCR9 snoU13.31-201ENST00000607291 104 ntBASIC0.79□□□□□ -2.28
CLRN3Q8NCR9 SNORD36A-201ENST00000362874 73 ntBASIC0.78□□□□□ -2.28
CLRN3Q8NCR9 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC0.78□□□□□ -2.28
CLRN3Q8NCR9 RNU6-109P-201ENST00000516364 107 ntBASIC0.78□□□□□ -2.28
CLRN3Q8NCR9 RNU6-184P-201ENST00000516514 107 ntBASIC0.78□□□□□ -2.28
CLRN3Q8NCR9 RNA5SP47-201ENST00000517230 109 ntBASIC0.78□□□□□ -2.28
CLRN3Q8NCR9 AC244669.1-204ENST00000621564 178 ntBASIC0.78□□□□□ -2.28
CLRN3Q8NCR9 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
CLRN3Q8NCR9 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
CLRN3Q8NCR9 RNU6-887P-201ENST00000410660 100 ntBASIC0.77□□□□□ -2.29
CLRN3Q8NCR9 SNORD114-21-201ENST00000606412 72 ntBASIC0.77□□□□□ -2.29
CLRN3Q8NCR9 AC103810.7-201ENST00000607821 91 ntBASIC0.77□□□□□ -2.29
CLRN3Q8NCR9 AC092634.7-201ENST00000621022 103 ntBASIC0.77□□□□□ -2.29
CLRN3Q8NCR9 Y_RNA.221-201ENST00000364248 96 ntBASIC0.76□□□□□ -2.29
CLRN3Q8NCR9 RNU6-153P-201ENST00000364422 104 ntBASIC0.76□□□□□ -2.29
CLRN3Q8NCR9 RNY1P8-201ENST00000383970 114 ntBASIC0.76□□□□□ -2.29
CLRN3Q8NCR9 RNU6-524P-201ENST00000384270 107 ntBASIC0.76□□□□□ -2.29
CLRN3Q8NCR9 RNU6-644P-201ENST00000391155 98 ntBASIC0.76□□□□□ -2.29
CLRN3Q8NCR9 AC087343.1-201ENST00000477341 475 ntBASIC0.76□□□□□ -2.29
CLRN3Q8NCR9 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC0.76□□□□□ -2.29
CLRN3Q8NCR9 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.76□□□□□ -2.29
CLRN3Q8NCR9 RNA5SP403-201ENST00000363598 108 ntBASIC0.75□□□□□ -2.29
CLRN3Q8NCR9 Y_RNA.327-201ENST00000365201 102 ntBASIC0.75□□□□□ -2.29
CLRN3Q8NCR9 Y_RNA.495-201ENST00000384435 112 ntBASIC0.75□□□□□ -2.29
CLRN3Q8NCR9 RNU6-466P-201ENST00000391224 103 ntBASIC0.75□□□□□ -2.29
CLRN3Q8NCR9 SNORA40.13-201ENST00000516379 120 ntBASIC0.75□□□□□ -2.29
CLRN3Q8NCR9 MIR548Z-201ENST00000584743 97 ntBASIC0.75□□□□□ -2.29
CLRN3Q8NCR9 MTATP8P2-201ENST00000435212 202 ntBASIC0.74□□□□□ -2.29
CLRN3Q8NCR9 RNU7-104P-201ENST00000459398 79 ntBASIC0.74□□□□□ -2.29
CLRN3Q8NCR9 Y_RNA.648-201ENST00000459455 110 ntBASIC0.74□□□□□ -2.29
CLRN3Q8NCR9 AL513043.2-201ENST00000573941 143 ntBASIC0.74□□□□□ -2.29
CLRN3Q8NCR9 MIR4498-201ENST00000577599 66 ntBASIC0.74□□□□□ -2.29
CLRN3Q8NCR9 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.74□□□□□ -2.29
CLRN3Q8NCR9 AP001318.4-201ENST00000616637 121 ntBASIC0.74□□□□□ -2.29
CLRN3Q8NCR9 AC025521.1-201ENST00000621624 286 ntBASIC0.74□□□□□ -2.29
CLRN3Q8NCR9 AC067863.3-201ENST00000624172 122 ntBASIC0.74□□□□□ -2.29
CLRN3Q8NCR9 MIR6828-201ENST00000636181 60 ntBASIC0.74□□□□□ -2.29
CLRN3Q8NCR9 SNORD71-201ENST00000411292 86 ntBASIC0.73□□□□□ -2.29
CLRN3Q8NCR9 RNU7-61P-201ENST00000515897 61 ntBASIC0.73□□□□□ -2.29
CLRN3Q8NCR9 RNA5SP227-201ENST00000516184 113 ntBASIC0.73□□□□□ -2.29
CLRN3Q8NCR9 RNU7-161P-201ENST00000517289 62 ntBASIC0.73□□□□□ -2.29
CLRN3Q8NCR9 AC018659.1-201ENST00000551083 169 ntBASIC0.73□□□□□ -2.29
CLRN3Q8NCR9 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.73□□□□□ -2.29
CLRN3Q8NCR9 RNY1P10-201ENST00000363268 113 ntBASIC0.72□□□□□ -2.29
CLRN3Q8NCR9 SNORD116-10-201ENST00000363791 102 ntBASIC0.72□□□□□ -2.29
CLRN3Q8NCR9 SNORD114-2-201ENST00000363953 78 ntBASIC0.72□□□□□ -2.29
CLRN3Q8NCR9 RNU4-38P-201ENST00000364472 129 ntBASIC0.72□□□□□ -2.29
CLRN3Q8NCR9 MIR548L-201ENST00000408303 86 ntBASIC0.72□□□□□ -2.29
CLRN3Q8NCR9 RNU6-1265P-201ENST00000516342 103 ntBASIC0.72□□□□□ -2.29
CLRN3Q8NCR9 RNA5SP268-201ENST00000516828 124 ntBASIC0.72□□□□□ -2.29
CLRN3Q8NCR9 MIR337-201ENST00000362281 93 ntBASIC0.71□□□□□ -2.3
CLRN3Q8NCR9 SNORA36.1-201ENST00000363424 132 ntBASIC0.71□□□□□ -2.3
CLRN3Q8NCR9 RNU6-392P-201ENST00000364926 101 ntBASIC0.71□□□□□ -2.3
CLRN3Q8NCR9 SNORA8.2-201ENST00000384372 139 ntBASIC0.71□□□□□ -2.3
CLRN3Q8NCR9 AL606490.4-201ENST00000423117 127 ntBASIC0.71□□□□□ -2.3
CLRN3Q8NCR9 TRMT112P2-201ENST00000512910 132 ntBASIC0.71□□□□□ -2.3
CLRN3Q8NCR9 RNU7-13P-201ENST00000516413 62 ntBASIC0.71□□□□□ -2.3
CLRN3Q8NCR9 RNA5SP517-201ENST00000364724 117 ntBASIC0.7□□□□□ -2.3
CLRN3Q8NCR9 Y_RNA.338-201ENST00000365320 114 ntBASIC0.7□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 171.7 ms