Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 MTND2P31-201ENST00000512602 616 ntBASIC-1.7□□□□□ -2.68
USF3Q68DE3 Y_RNA.3-201ENST00000362331 103 ntBASIC-1.71□□□□□ -2.68
USF3Q68DE3 Y_RNA.98-201ENST00000363109 102 ntBASIC-1.71□□□□□ -2.68
USF3Q68DE3 Y_RNA.199-201ENST00000364014 102 ntBASIC-1.71□□□□□ -2.68
USF3Q68DE3 Y_RNA.360-201ENST00000365512 102 ntBASIC-1.71□□□□□ -2.68
USF3Q68DE3 U3.27-201ENST00000391237 200 ntBASIC-1.71□□□□□ -2.68
USF3Q68DE3 RNU6-1052P-201ENST00000411398 104 ntBASIC-1.71□□□□□ -2.68
USF3Q68DE3 HSPE1P25-201ENST00000455484 251 ntBASIC-1.71□□□□□ -2.68
USF3Q68DE3 RNU6-719P-201ENST00000516671 104 ntBASIC-1.71□□□□□ -2.68
USF3Q68DE3 RNU6-1149P-201ENST00000516810 97 ntBASIC-1.71□□□□□ -2.68
USF3Q68DE3 SCARNA15-202ENST00000516881 127 ntBASIC-1.71□□□□□ -2.68
USF3Q68DE3 RNU6-232P-201ENST00000517144 64 ntBASIC-1.71□□□□□ -2.68
USF3Q68DE3 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-1.71□□□□□ -2.68
USF3Q68DE3 Y_RNA.505-201ENST00000384489 102 ntBASIC-1.71□□□□□ -2.68
USF3Q68DE3 SNORD19-201ENST00000391191 68 ntBASIC-1.71□□□□□ -2.68
USF3Q68DE3 SNORA26.8-201ENST00000391306 124 ntBASIC-1.71□□□□□ -2.68
USF3Q68DE3 SNORA19.1-201ENST00000410656 129 ntBASIC-1.71□□□□□ -2.68
USF3Q68DE3 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.71□□□□□ -2.68
USF3Q68DE3 snoU13.10-201ENST00000459301 103 ntBASIC-1.71□□□□□ -2.68
USF3Q68DE3 RNU6-311P-201ENST00000516224 102 ntBASIC-1.71□□□□□ -2.68
USF3Q68DE3 AC009094.1-201ENST00000564443 426 ntBASIC-1.71□□□□□ -2.68
USF3Q68DE3 SNORD113-5-201ENST00000607261 78 ntBASIC-1.71□□□□□ -2.68
USF3Q68DE3 DLEU2_3.1-201ENST00000620005 73 ntBASIC-1.71□□□□□ -2.68
USF3Q68DE3 RNU6-1272P-201ENST00000362776 107 ntBASIC-1.72□□□□□ -2.68
USF3Q68DE3 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.72□□□□□ -2.68
USF3Q68DE3 AC113618.1-201ENST00000416747 285 ntBASIC-1.72□□□□□ -2.68
USF3Q68DE3 AL731563.1-201ENST00000442202 214 ntBASIC-1.72□□□□□ -2.68
USF3Q68DE3 RNU6-1129P-201ENST00000515964 104 ntBASIC-1.72□□□□□ -2.68
USF3Q68DE3 Y_RNA.708-201ENST00000516950 96 ntBASIC-1.72□□□□□ -2.68
USF3Q68DE3 MIR4748-201ENST00000578076 82 ntBASIC-1.72□□□□□ -2.68
USF3Q68DE3 AC073114.1-201ENST00000612027 490 ntBASIC-1.72□□□□□ -2.68
USF3Q68DE3 AC048344.4-201ENST00000619744 527 ntBASIC-1.72□□□□□ -2.68
USF3Q68DE3 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-1.72□□□□□ -2.68
USF3Q68DE3 Y_RNA.82-201ENST00000363000 102 ntBASIC-1.72□□□□□ -2.69
USF3Q68DE3 Y_RNA.92-201ENST00000363043 102 ntBASIC-1.72□□□□□ -2.69
USF3Q68DE3 Y_RNA.143-201ENST00000363520 106 ntBASIC-1.72□□□□□ -2.69
USF3Q68DE3 RNU6-1085P-201ENST00000363576 107 ntBASIC-1.72□□□□□ -2.69
USF3Q68DE3 Y_RNA.235-201ENST00000364412 102 ntBASIC-1.72□□□□□ -2.69
USF3Q68DE3 Y_RNA.306-201ENST00000365015 102 ntBASIC-1.72□□□□□ -2.69
USF3Q68DE3 Y_RNA.308-201ENST00000365043 101 ntBASIC-1.72□□□□□ -2.69
USF3Q68DE3 Y_RNA.312-201ENST00000365089 102 ntBASIC-1.72□□□□□ -2.69
USF3Q68DE3 Y_RNA.322-201ENST00000365151 102 ntBASIC-1.72□□□□□ -2.69
USF3Q68DE3 Y_RNA.650-201ENST00000459002 102 ntBASIC-1.72□□□□□ -2.69
USF3Q68DE3 Y_RNA.777-201ENST00000516982 102 ntBASIC-1.72□□□□□ -2.69
USF3Q68DE3 U7.5-201ENST00000517224 61 ntBASIC-1.72□□□□□ -2.69
USF3Q68DE3 Y_RNA.771-201ENST00000598668 102 ntBASIC-1.72□□□□□ -2.69
USF3Q68DE3 FTX_4.1-201ENST00000616291 147 ntBASIC-1.72□□□□□ -2.69
USF3Q68DE3 U2.1-201ENST00000618978 145 ntBASIC-1.72□□□□□ -2.69
USF3Q68DE3 AC022079.1-201ENST00000621546 602 ntBASIC-1.72□□□□□ -2.69
USF3Q68DE3 Y_RNA.789-201ENST00000622480 102 ntBASIC-1.72□□□□□ -2.69
USF3Q68DE3 RNU6-647P-201ENST00000364243 107 ntBASIC-1.73□□□□□ -2.69
USF3Q68DE3 MIR122-201ENST00000385044 85 ntBASIC-1.73□□□□□ -2.69
USF3Q68DE3 MTND3P10-201ENST00000450967 341 ntBASIC-1.73□□□□□ -2.69
USF3Q68DE3 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC-1.73□□□□□ -2.69
USF3Q68DE3 U8.20-201ENST00000459445 131 ntBASIC-1.73□□□□□ -2.69
USF3Q68DE3 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC-1.73□□□□□ -2.69
USF3Q68DE3 RNA5SP236-201ENST00000516169 116 ntBASIC-1.73□□□□□ -2.69
USF3Q68DE3 NBR2-204ENST00000587322 63 ntBASIC-1.73□□□□□ -2.69
USF3Q68DE3 C8orf59P2-201ENST00000603441 271 ntBASIC-1.73□□□□□ -2.69
USF3Q68DE3 RNU6-90P-201ENST00000606352 106 ntBASIC-1.73□□□□□ -2.69
USF3Q68DE3 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.74□□□□□ -2.69
USF3Q68DE3 MIR548Q-201ENST00000408404 100 ntBASIC-1.74□□□□□ -2.69
USF3Q68DE3 MTND4LP30-201ENST00000454092 297 ntBASIC-1.74□□□□□ -2.69
USF3Q68DE3 AP002392.1-201ENST00000537692 208 ntBASIC-1.74□□□□□ -2.69
USF3Q68DE3 Y_RNA.24-201ENST00000362508 103 ntBASIC-1.74□□□□□ -2.69
USF3Q68DE3 Y_RNA.339-201ENST00000365325 102 ntBASIC-1.74□□□□□ -2.69
USF3Q68DE3 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.74□□□□□ -2.69
USF3Q68DE3 Y_RNA.513-201ENST00000384522 100 ntBASIC-1.74□□□□□ -2.69
USF3Q68DE3 Y_RNA.541-201ENST00000384640 113 ntBASIC-1.74□□□□□ -2.69
USF3Q68DE3 MTND5P5-201ENST00000503764 376 ntBASIC-1.74□□□□□ -2.69
USF3Q68DE3 RNU6-507P-201ENST00000516045 100 ntBASIC-1.74□□□□□ -2.69
USF3Q68DE3 AC124864.2-201ENST00000624736 186 ntBASIC-1.74□□□□□ -2.69
USF3Q68DE3 MIR5683-201ENST00000636514 76 ntBASIC-1.74□□□□□ -2.69
USF3Q68DE3 RNY4P9-201ENST00000363194 97 ntBASIC-1.75□□□□□ -2.69
USF3Q68DE3 RNU6ATAC19P-201ENST00000408096 110 ntBASIC-1.75□□□□□ -2.69
USF3Q68DE3 Y_RNA.592-201ENST00000410274 109 ntBASIC-1.75□□□□□ -2.69
USF3Q68DE3 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC-1.75□□□□□ -2.69
USF3Q68DE3 IGHVIII-67-2-201ENST00000519849 88 ntBASIC-1.75□□□□□ -2.69
USF3Q68DE3 AL512360.1-201ENST00000555346 234 ntBASIC-1.75□□□□□ -2.69
USF3Q68DE3 CYP3A54P-201ENST00000566950 75 ntBASIC-1.75□□□□□ -2.69
USF3Q68DE3 AC090617.10-201ENST00000624308 134 ntBASIC-1.75□□□□□ -2.69
USF3Q68DE3 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.75□□□□□ -2.69
USF3Q68DE3 Y_RNA.120-201ENST00000363304 110 ntBASIC-1.75□□□□□ -2.69
USF3Q68DE3 Y_RNA.474-201ENST00000384341 102 ntBASIC-1.75□□□□□ -2.69
USF3Q68DE3 MIR548A1-201ENST00000385041 97 ntBASIC-1.75□□□□□ -2.69
USF3Q68DE3 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-1.75□□□□□ -2.69
USF3Q68DE3 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC-1.75□□□□□ -2.69
USF3Q68DE3 MIR4790-201ENST00000577799 79 ntBASIC-1.75□□□□□ -2.69
USF3Q68DE3 PISRT1.1-201ENST00000616930 107 ntBASIC-1.75□□□□□ -2.69
USF3Q68DE3 U6.96-201ENST00000636425 70 ntBASIC-1.75□□□□□ -2.69
USF3Q68DE3 Y_RNA.173-201ENST00000363776 113 ntBASIC-1.76□□□□□ -2.69
USF3Q68DE3 RNU6-563P-201ENST00000364872 108 ntBASIC-1.76□□□□□ -2.69
USF3Q68DE3 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.76□□□□□ -2.69
USF3Q68DE3 RNU6-1040P-201ENST00000383974 107 ntBASIC-1.76□□□□□ -2.69
USF3Q68DE3 RNU6-1013P-201ENST00000384180 107 ntBASIC-1.76□□□□□ -2.69
USF3Q68DE3 MTND1P1-201ENST00000445453 368 ntBASIC-1.76□□□□□ -2.69
USF3Q68DE3 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC-1.76□□□□□ -2.69
USF3Q68DE3 RNU2-4P-201ENST00000606190 192 ntBASIC-1.76□□□□□ -2.69
USF3Q68DE3 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.76□□□□□ -2.69
USF3Q68DE3 SNX3P1Y-201ENST00000615757 176 ntBASIC-1.76□□□□□ -2.69
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms