| PAX8 | Q06710 | MIR548H5-201 | ENST00000580314 | 60 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | ST7-AS2_1.1-201 | ENST00000622900 | 72 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | IST1-227 | ENST00000626438 | 126 nt | TSL 5 BASIC | 0.49 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | C18orf54-201 | ENST00000300091 | 5237 nt | APPRIS P1 TSL 1 (best) BASIC | 0.49 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | ZNF518A-209 | ENST00000614149 | 7911 nt | APPRIS P1 TSL 5 BASIC | 0.49 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | Y_RNA.49-201 | ENST00000362714 | 112 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | SNORD18A-201 | ENST00000363753 | 72 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | SNORD38.1-201 | ENST00000363863 | 68 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | Y_RNA.323-201 | ENST00000365157 | 109 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | RNU6-1014P-201 | ENST00000383940 | 103 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | RNU6-571P-201 | ENST00000384128 | 107 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | SNORD38.2-201 | ENST00000384470 | 69 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | RNU6-1081P-201 | ENST00000384537 | 107 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | MIR635-201 | ENST00000384830 | 98 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | AC079760.1-201 | ENST00000456952 | 202 nt | TSL 3 BASIC | 0.48 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | RNU6-412P-201 | ENST00000516434 | 106 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | RNA5SP94-201 | ENST00000516917 | 108 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | RNU6-850P-201 | ENST00000516934 | 103 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | MTND5P40-201 | ENST00000559945 | 246 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | MIR4694-201 | ENST00000578534 | 80 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | MIR3613-201 | ENST00000579844 | 87 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | RNU6-1290P-201 | ENST00000362957 | 109 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | RNU6-832P-201 | ENST00000363319 | 107 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | RNU6-1099P-201 | ENST00000363533 | 107 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | Y_RNA.273-201 | ENST00000364703 | 102 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | Y_RNA.377-201 | ENST00000365644 | 108 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | MIR548G-201 | ENST00000408442 | 89 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | AL162399.1-201 | ENST00000426090 | 130 nt | TSL 3 BASIC | 0.47 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | SPINT5P-201 | ENST00000448174 | 155 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | RNU6-469P-201 | ENST00000516253 | 101 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | RNU6-589P-201 | ENST00000516485 | 107 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | AC138869.1-201 | ENST00000568623 | 124 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | RNU6-90P-201 | ENST00000606352 | 106 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| PAX8 | Q06710 | RNU6-170P-201 | ENST00000362832 | 104 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | RNY3P2-201 | ENST00000362918 | 102 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | SNORA36.1-201 | ENST00000363424 | 132 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | SNORD114-26-201 | ENST00000363543 | 72 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | Y_RNA.173-201 | ENST00000363776 | 113 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | Y_RNA.466-201 | ENST00000384294 | 113 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | MIR92A1-201 | ENST00000385233 | 78 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | SNORD63B-201 | ENST00000411005 | 70 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | AC244505.6-201 | ENST00000452829 | 130 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | RNU7-106P-201 | ENST00000459514 | 67 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | RNU7-10P-201 | ENST00000607194 | 63 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | uc_338.17-201 | ENST00000619633 | 179 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | ZBTB41-201 | ENST00000367405 | 8478 nt | APPRIS P1 TSL 1 (best) BASIC | 0.45 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | C9orf84-203 | ENST00000374287 | 4721 nt | APPRIS P3 TSL 5 BASIC | 0.45 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | RNA5SP499-201 | ENST00000363982 | 119 nt | BASIC | 0.45 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | RNA5SP517-201 | ENST00000364724 | 117 nt | BASIC | 0.45 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | Y_RNA.291-201 | ENST00000364886 | 113 nt | BASIC | 0.45 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | Y_RNA.342-201 | ENST00000365352 | 113 nt | BASIC | 0.45 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | SNORD28-201 | ENST00000384706 | 75 nt | BASIC | 0.45 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | Y_RNA.567-201 | ENST00000384736 | 106 nt | BASIC | 0.45 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | MIR216A-201 | ENST00000385063 | 110 nt | BASIC | 0.45 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | RNU7-195P-201 | ENST00000458793 | 62 nt | BASIC | 0.45 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | COX7A2-206 | ENST00000472311 | 325 nt | TSL 2 BASIC | 0.45 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | RNA5SP480-201 | ENST00000516840 | 109 nt | BASIC | 0.45 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | RNA5SP47-201 | ENST00000517230 | 109 nt | BASIC | 0.45 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | MIR4711-201 | ENST00000578274 | 70 nt | BASIC | 0.45 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | RN7SL793P-201 | ENST00000583259 | 296 nt | BASIC | 0.45 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | Y_RNA.36-201 | ENST00000362602 | 112 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | RNU6-1163P-201 | ENST00000364516 | 107 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | RNU6-1325P-201 | ENST00000364905 | 105 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | RNU6-945P-201 | ENST00000383947 | 107 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | MIR516A2-201 | ENST00000384888 | 90 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | MIR516A1-201 | ENST00000385033 | 90 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | RNA5SP193-201 | ENST00000410353 | 107 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | SNORA19.1-201 | ENST00000410656 | 129 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | Y_RNA.629-201 | ENST00000411368 | 105 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | AC103879.1-201 | ENST00000503093 | 255 nt | TSL 2 BASIC | 0.44 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | RNU6-135P-201 | ENST00000516769 | 101 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | Y_RNA.709-201 | ENST00000516952 | 92 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | AC141557.1-201 | ENST00000540982 | 400 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | MIR4639-201 | ENST00000584938 | 69 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | AC096720.1-201 | ENST00000604441 | 183 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | AC244669.1-204 | ENST00000621564 | 178 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | HECTD2-202 | ENST00000371667 | 4354 nt | TSL 1 (best) BASIC | 0.43 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | SNORD115-24-201 | ENST00000363528 | 82 nt | BASIC | 0.43 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | RNU6-106P-201 | ENST00000384405 | 107 nt | BASIC | 0.43 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | MIR519A1-201 | ENST00000385257 | 85 nt | BASIC | 0.43 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | AC098934.3-201 | ENST00000430450 | 190 nt | BASIC | 0.43 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | AC097635.1-201 | ENST00000450678 | 155 nt | BASIC | 0.43 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | RNU4-54P-201 | ENST00000516428 | 129 nt | BASIC | 0.43 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | RNA5SP121-201 | ENST00000516537 | 101 nt | BASIC | 0.43 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | RNU7-161P-201 | ENST00000517289 | 62 nt | BASIC | 0.43 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | MIR548AI-201 | ENST00000579940 | 88 nt | BASIC | 0.43 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | AC092634.7-201 | ENST00000621022 | 103 nt | BASIC | 0.43 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | AC091304.10-201 | ENST00000641554 | 121 nt | BASIC | 0.43 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | Y_RNA.163-201 | ENST00000363702 | 113 nt | BASIC | 0.42 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | Y_RNA.221-201 | ENST00000364248 | 96 nt | BASIC | 0.42 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | RNU6-1229P-201 | ENST00000364295 | 107 nt | BASIC | 0.42 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | MIR599-201 | ENST00000385069 | 95 nt | BASIC | 0.42 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | RNY4P18-201 | ENST00000391107 | 89 nt | BASIC | 0.42 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | RNU6-554P-201 | ENST00000410466 | 106 nt | BASIC | 0.42 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | AC109327.2-201 | ENST00000448339 | 378 nt | BASIC | 0.42 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | Y_RNA.659-201 | ENST00000515994 | 113 nt | BASIC | 0.42 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | Y_RNA.809-201 | ENST00000516058 | 95 nt | BASIC | 0.42 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | SCARNA16.5-201 | ENST00000517114 | 183 nt | BASIC | 0.42 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | AC018659.1-201 | ENST00000551083 | 169 nt | BASIC | 0.42 | □□□□□ -2.34 | | |
| PAX8 | Q06710 | SNORA25.18-201 | ENST00000607153 | 114 nt | BASIC | 0.42 | □□□□□ -2.34 | | |