Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 MIR3914-2-201ENST00000637339 95 ntBASIC0.27□□□□□ -2.37
CX3CL1P78423 AL512310.12-203ENST00000640543 90 ntBASIC0.27□□□□□ -2.37
CX3CL1P78423 Y_RNA.71-201ENST00000362892 104 ntBASIC0.26□□□□□ -2.37
CX3CL1P78423 RNU6-726P-201ENST00000364680 107 ntBASIC0.26□□□□□ -2.37
CX3CL1P78423 RNU6-409P-201ENST00000384114 104 ntBASIC0.26□□□□□ -2.37
CX3CL1P78423 Y_RNA.809-201ENST00000516058 95 ntBASIC0.26□□□□□ -2.37
CX3CL1P78423 MIR6515-201ENST00000619843 57 ntBASIC0.26□□□□□ -2.37
CX3CL1P78423 MIR6755-201ENST00000619993 66 ntBASIC0.26□□□□□ -2.37
CX3CL1P78423 RNU6-816P-201ENST00000390914 107 ntBASIC0.25□□□□□ -2.37
CX3CL1P78423 RNU6-1268P-201ENST00000391214 107 ntBASIC0.25□□□□□ -2.37
CX3CL1P78423 RNU6-1239P-201ENST00000391310 107 ntBASIC0.25□□□□□ -2.37
CX3CL1P78423 MIR548L-201ENST00000408303 86 ntBASIC0.25□□□□□ -2.37
CX3CL1P78423 AC073261.1-201ENST00000429409 121 ntBASIC0.25□□□□□ -2.37
CX3CL1P78423 RNU6-659P-201ENST00000516454 104 ntBASIC0.25□□□□□ -2.37
CX3CL1P78423 RNU6-1018P-201ENST00000516577 106 ntBASIC0.25□□□□□ -2.37
CX3CL1P78423 MTND5P40-201ENST00000559945 246 ntBASIC0.25□□□□□ -2.37
CX3CL1P78423 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.25□□□□□ -2.37
CX3CL1P78423 AL035470.1-201ENST00000622571 220 ntBASIC0.25□□□□□ -2.37
CX3CL1P78423 AL162726.3-218ENST00000636401 95 ntBASIC0.25□□□□□ -2.37
CX3CL1P78423 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.24□□□□□ -2.37
CX3CL1P78423 Y_RNA.35-201ENST00000362601 101 ntBASIC0.24□□□□□ -2.37
CX3CL1P78423 Y_RNA.85-201ENST00000363014 111 ntBASIC0.24□□□□□ -2.37
CX3CL1P78423 Y_RNA.247-201ENST00000364500 92 ntBASIC0.24□□□□□ -2.37
CX3CL1P78423 Y_RNA.342-201ENST00000365352 113 ntBASIC0.24□□□□□ -2.37
CX3CL1P78423 VTRNA1-3-201ENST00000365645 89 ntBASIC0.24□□□□□ -2.37
CX3CL1P78423 MIR1912-201ENST00000410389 80 ntBASIC0.24□□□□□ -2.37
CX3CL1P78423 Y_RNA.649-201ENST00000459077 103 ntBASIC0.24□□□□□ -2.37
CX3CL1P78423 RNU7-106P-201ENST00000459514 67 ntBASIC0.24□□□□□ -2.37
CX3CL1P78423 SNORD33.1-201ENST00000516213 88 ntBASIC0.24□□□□□ -2.37
CX3CL1P78423 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.24□□□□□ -2.37
CX3CL1P78423 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC0.24□□□□□ -2.37
CX3CL1P78423 Y_RNA.355-201ENST00000365462 98 ntBASIC0.23□□□□□ -2.37
CX3CL1P78423 SNORD116-14-201ENST00000383894 92 ntBASIC0.23□□□□□ -2.37
CX3CL1P78423 SNORD116-17-201ENST00000383929 92 ntBASIC0.23□□□□□ -2.37
CX3CL1P78423 Y_RNA.423-201ENST00000384057 113 ntBASIC0.23□□□□□ -2.37
CX3CL1P78423 RNU6-815P-201ENST00000384080 113 ntBASIC0.23□□□□□ -2.37
CX3CL1P78423 RNU6-1201P-201ENST00000384227 107 ntBASIC0.23□□□□□ -2.37
CX3CL1P78423 SNORD116-15-201ENST00000384445 92 ntBASIC0.23□□□□□ -2.37
CX3CL1P78423 SNORD116-19-201ENST00000384729 92 ntBASIC0.23□□□□□ -2.37
CX3CL1P78423 RPL39P34-201ENST00000477141 156 ntBASIC0.23□□□□□ -2.37
CX3CL1P78423 MIR4752-201ENST00000579672 72 ntBASIC0.23□□□□□ -2.37
CX3CL1P78423 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.23□□□□□ -2.37
CX3CL1P78423 AC067863.3-201ENST00000624172 122 ntBASIC0.23□□□□□ -2.37
CX3CL1P78423 RNU6-1260P-201ENST00000362944 107 ntBASIC0.22□□□□□ -2.37
CX3CL1P78423 SNORD38.1-201ENST00000363863 68 ntBASIC0.22□□□□□ -2.37
CX3CL1P78423 MIR516A2-201ENST00000384888 90 ntBASIC0.22□□□□□ -2.37
CX3CL1P78423 MIR516A1-201ENST00000385033 90 ntBASIC0.22□□□□□ -2.37
CX3CL1P78423 SNORD41.1-201ENST00000391000 69 ntBASIC0.22□□□□□ -2.37
CX3CL1P78423 SPINT5P-201ENST00000448174 155 ntBASIC0.22□□□□□ -2.37
CX3CL1P78423 AC069113.3-201ENST00000521019 150 ntBASIC0.22□□□□□ -2.37
CX3CL1P78423 AC007012.1-201ENST00000567192 175 ntBASIC0.22□□□□□ -2.37
CX3CL1P78423 MIR4679-2-201ENST00000578358 77 ntBASIC0.22□□□□□ -2.37
CX3CL1P78423 AL162376.1-201ENST00000624117 175 ntBASIC0.22□□□□□ -2.37
CX3CL1P78423 U6.95-201ENST00000636931 70 ntBASIC0.22□□□□□ -2.37
CX3CL1P78423 MIR548G-201ENST00000408442 89 ntBASIC0.21□□□□□ -2.38
CX3CL1P78423 snoU13.18-201ENST00000459483 104 ntBASIC0.21□□□□□ -2.38
CX3CL1P78423 RNU1-29P-201ENST00000606574 126 ntBASIC0.21□□□□□ -2.38
CX3CL1P78423 Y_RNA.309-201ENST00000365046 111 ntBASIC0.2□□□□□ -2.38
CX3CL1P78423 RNU6-524P-201ENST00000384270 107 ntBASIC0.2□□□□□ -2.38
CX3CL1P78423 Y_RNA.549-201ENST00000384657 102 ntBASIC0.2□□□□□ -2.38
CX3CL1P78423 MIR598-201ENST00000384868 97 ntBASIC0.2□□□□□ -2.38
CX3CL1P78423 MIR548M-201ENST00000408260 86 ntBASIC0.2□□□□□ -2.38
CX3CL1P78423 RNU6-1265P-201ENST00000516342 103 ntBASIC0.2□□□□□ -2.38
CX3CL1P78423 MIR5093-201ENST00000583199 100 ntBASIC0.2□□□□□ -2.38
CX3CL1P78423 RNU6-90P-201ENST00000606352 106 ntBASIC0.2□□□□□ -2.38
CX3CL1P78423 AL442128.1-201ENST00000615151 90 ntBASIC0.2□□□□□ -2.38
CX3CL1P78423 Y_RNA.508-201ENST00000384502 114 ntBASIC0.19□□□□□ -2.38
CX3CL1P78423 MIR760-201ENST00000390220 80 ntBASIC0.19□□□□□ -2.38
CX3CL1P78423 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.19□□□□□ -2.38
CX3CL1P78423 RNU6-848P-201ENST00000515948 107 ntBASIC0.19□□□□□ -2.38
CX3CL1P78423 RNU6-617P-201ENST00000516147 107 ntBASIC0.19□□□□□ -2.38
CX3CL1P78423 RNU6-473P-201ENST00000516164 107 ntBASIC0.19□□□□□ -2.38
CX3CL1P78423 RNU6-1049P-201ENST00000516414 107 ntBASIC0.19□□□□□ -2.38
CX3CL1P78423 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.19□□□□□ -2.38
CX3CL1P78423 SNORA9.1-201ENST00000362412 131 ntBASIC0.18□□□□□ -2.38
CX3CL1P78423 Y_RNA.57-201ENST00000362806 113 ntBASIC0.18□□□□□ -2.38
CX3CL1P78423 Y_RNA.173-201ENST00000363776 113 ntBASIC0.18□□□□□ -2.38
CX3CL1P78423 Y_RNA.323-201ENST00000365157 109 ntBASIC0.18□□□□□ -2.38
CX3CL1P78423 Y_RNA.377-201ENST00000365644 108 ntBASIC0.18□□□□□ -2.38
CX3CL1P78423 MIR548A1-201ENST00000385041 97 ntBASIC0.18□□□□□ -2.38
CX3CL1P78423 MIR548A3-201ENST00000385297 97 ntBASIC0.18□□□□□ -2.38
CX3CL1P78423 RNU6-1333P-201ENST00000516162 93 ntBASIC0.18□□□□□ -2.38
CX3CL1P78423 AL670379.3-201ENST00000605040 251 ntBASIC0.18□□□□□ -2.38
CX3CL1P78423 Y_RNA.353-201ENST00000365440 108 ntBASIC0.17□□□□□ -2.38
CX3CL1P78423 SNORA2A-201ENST00000383885 135 ntBASIC0.17□□□□□ -2.38
CX3CL1P78423 MIR577-201ENST00000385196 96 ntBASIC0.17□□□□□ -2.38
CX3CL1P78423 RNU6-269P-201ENST00000391077 97 ntBASIC0.17□□□□□ -2.38
CX3CL1P78423 RNU7-129P-201ENST00000516128 62 ntBASIC0.17□□□□□ -2.38
CX3CL1P78423 RNU7-13P-201ENST00000516413 62 ntBASIC0.17□□□□□ -2.38
CX3CL1P78423 MIR3920-201ENST00000581751 86 ntBASIC0.17□□□□□ -2.38
CX3CL1P78423 SNORA70.25-201ENST00000612741 95 ntBASIC0.17□□□□□ -2.38
CX3CL1P78423 MIR4315-1-201ENST00000636800 73 ntBASIC0.17□□□□□ -2.38
CX3CL1P78423 MIR4315-2-201ENST00000640925 73 ntBASIC0.17□□□□□ -2.38
CX3CL1P78423 SNORD114-23-201ENST00000363536 72 ntBASIC0.16□□□□□ -2.38
CX3CL1P78423 RNA5SP128-201ENST00000365305 116 ntBASIC0.16□□□□□ -2.38
CX3CL1P78423 RNU6-959P-201ENST00000384671 107 ntBASIC0.16□□□□□ -2.38
CX3CL1P78423 RNU6-1254P-201ENST00000391266 104 ntBASIC0.16□□□□□ -2.38
CX3CL1P78423 TMSB4XP3-201ENST00000445144 114 ntBASIC0.16□□□□□ -2.38
CX3CL1P78423 MIR4694-201ENST00000578534 80 ntBASIC0.16□□□□□ -2.38
CX3CL1P78423 RNU6-1232P-201ENST00000516299 86 ntBASIC0.15□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 205.2 ms