Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 Y_RNA.283-201ENST00000364798 112 ntBASIC1.47□□□□□ -2.17
RNF4P78317 Y_RNA.437-201ENST00000384113 113 ntBASIC1.47□□□□□ -2.17
RNF4P78317 MIR520F-201ENST00000384824 87 ntBASIC1.47□□□□□ -2.17
RNF4P78317 RNU6-466P-201ENST00000391224 103 ntBASIC1.47□□□□□ -2.17
RNF4P78317 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.47□□□□□ -2.17
RNF4P78317 RNU7-171P-201ENST00000459581 62 ntBASIC1.47□□□□□ -2.17
RNF4P78317 RNU6-448P-201ENST00000517052 107 ntBASIC1.47□□□□□ -2.17
RNF4P78317 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.47□□□□□ -2.17
RNF4P78317 RNU7-10P-201ENST00000607194 63 ntBASIC1.47□□□□□ -2.17
RNF4P78317 RNU6-291P-201ENST00000384720 107 ntBASIC1.46□□□□□ -2.18
RNF4P78317 RNU6-535P-201ENST00000384722 107 ntBASIC1.46□□□□□ -2.18
RNF4P78317 RNU6-1275P-201ENST00000391087 107 ntBASIC1.46□□□□□ -2.18
RNF4P78317 RNA5SP225-201ENST00000410874 135 ntBASIC1.46□□□□□ -2.18
RNF4P78317 Y_RNA.809-201ENST00000516058 95 ntBASIC1.46□□□□□ -2.18
RNF4P78317 RNU6-65P-201ENST00000516332 98 ntBASIC1.46□□□□□ -2.18
RNF4P78317 RNU7-153P-201ENST00000516455 62 ntBASIC1.46□□□□□ -2.18
RNF4P78317 SNORD53B-201ENST00000577887 78 ntBASIC1.46□□□□□ -2.18
RNF4P78317 MIR3202-2-201ENST00000635980 79 ntBASIC1.46□□□□□ -2.18
RNF4P78317 RNA5SP432-201ENST00000362480 116 ntBASIC1.45□□□□□ -2.18
RNF4P78317 RNU6-787P-201ENST00000384032 107 ntBASIC1.45□□□□□ -2.18
RNF4P78317 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
RNF4P78317 RNU1-119P-201ENST00000391122 165 ntBASIC1.45□□□□□ -2.18
RNF4P78317 SNORA17.3-201ENST00000391159 129 ntBASIC1.45□□□□□ -2.18
RNF4P78317 MIR1827-201ENST00000408549 66 ntBASIC1.45□□□□□ -2.18
RNF4P78317 RNU7-56P-201ENST00000458744 62 ntBASIC1.45□□□□□ -2.18
RNF4P78317 MIR4536-1-201ENST00000583537 88 ntBASIC1.45□□□□□ -2.18
RNF4P78317 BX248123.2-201ENST00000606318 124 ntBASIC1.45□□□□□ -2.18
RNF4P78317 RNA5SP245-201ENST00000364239 121 ntBASIC1.44□□□□□ -2.18
RNF4P78317 MIR1255A-201ENST00000408338 113 ntBASIC1.44□□□□□ -2.18
RNF4P78317 AL606490.4-201ENST00000423117 127 ntBASIC1.44□□□□□ -2.18
RNF4P78317 RPS29P23-201ENST00000458635 123 ntBASIC1.44□□□□□ -2.18
RNF4P78317 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.44□□□□□ -2.18
RNF4P78317 SNORD115-37-201ENST00000363768 82 ntBASIC1.43□□□□□ -2.18
RNF4P78317 Y_RNA.313-201ENST00000365095 103 ntBASIC1.43□□□□□ -2.18
RNF4P78317 MIR517C-201ENST00000385103 95 ntBASIC1.43□□□□□ -2.18
RNF4P78317 RNU6-75P-201ENST00000515944 104 ntBASIC1.43□□□□□ -2.18
RNF4P78317 MIR4303-201ENST00000581299 66 ntBASIC1.43□□□□□ -2.18
RNF4P78317 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.43□□□□□ -2.18
RNF4P78317 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.42□□□□□ -2.18
RNF4P78317 RNU6-811P-201ENST00000384069 107 ntBASIC1.42□□□□□ -2.18
RNF4P78317 MIR519A1-201ENST00000385257 85 ntBASIC1.42□□□□□ -2.18
RNF4P78317 SNORA67.6-201ENST00000391093 99 ntBASIC1.42□□□□□ -2.18
RNF4P78317 MIR1236-201ENST00000408340 102 ntBASIC1.42□□□□□ -2.18
RNF4P78317 AC108667.1-201ENST00000428618 249 ntBASIC1.42□□□□□ -2.18
RNF4P78317 AC093729.1-201ENST00000513074 128 ntBASIC1.42□□□□□ -2.18
RNF4P78317 MIR4666B-201ENST00000578142 81 ntBASIC1.42□□□□□ -2.18
RNF4P78317 RMST_2.1-201ENST00000617263 136 ntBASIC1.42□□□□□ -2.18
RNF4P78317 MIRLET7F1-201ENST00000362202 87 ntBASIC1.41□□□□□ -2.18
RNF4P78317 RNU1-42P-201ENST00000364033 160 ntBASIC1.41□□□□□ -2.18
RNF4P78317 RNU6-132P-201ENST00000383863 107 ntBASIC1.41□□□□□ -2.18
RNF4P78317 Y_RNA.508-201ENST00000384502 114 ntBASIC1.41□□□□□ -2.18
RNF4P78317 MIR599-201ENST00000385069 95 ntBASIC1.41□□□□□ -2.18
RNF4P78317 MIR520H-201ENST00000385126 88 ntBASIC1.41□□□□□ -2.18
RNF4P78317 RNA5SP292-201ENST00000390974 118 ntBASIC1.41□□□□□ -2.18
RNF4P78317 SNORD89-201ENST00000390981 114 ntBASIC1.41□□□□□ -2.18
RNF4P78317 MIR1323-201ENST00000408090 73 ntBASIC1.41□□□□□ -2.18
RNF4P78317 Y_RNA.607-201ENST00000410597 98 ntBASIC1.41□□□□□ -2.18
RNF4P78317 AC097635.1-201ENST00000450678 155 ntBASIC1.41□□□□□ -2.18
RNF4P78317 AC019288.1-201ENST00000557918 224 ntBASIC1.41□□□□□ -2.18
RNF4P78317 AC138907.6-201ENST00000568401 126 ntBASIC1.41□□□□□ -2.18
RNF4P78317 AC138869.1-201ENST00000568623 124 ntBASIC1.41□□□□□ -2.18
RNF4P78317 TRDV1-202ENST00000621643 102 ntBASIC1.41□□□□□ -2.18
RNF4P78317 RNU6-1260P-201ENST00000362944 107 ntBASIC1.4□□□□□ -2.19
RNF4P78317 RNU6-652P-201ENST00000365488 107 ntBASIC1.4□□□□□ -2.19
RNF4P78317 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
RNF4P78317 MIR1304-201ENST00000408243 91 ntBASIC1.4□□□□□ -2.19
RNF4P78317 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.4□□□□□ -2.19
RNF4P78317 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
RNF4P78317 Y_RNA.32-201ENST00000362589 110 ntBASIC1.39□□□□□ -2.19
RNF4P78317 RNU4-62P-201ENST00000410125 130 ntBASIC1.39□□□□□ -2.19
RNF4P78317 RNA5SP458-201ENST00000516188 119 ntBASIC1.39□□□□□ -2.19
RNF4P78317 Y_RNA.685-201ENST00000516532 108 ntBASIC1.39□□□□□ -2.19
RNF4P78317 SNORA31.24-201ENST00000517232 57 ntBASIC1.39□□□□□ -2.19
RNF4P78317 SNORD26-201ENST00000384147 75 ntBASIC1.38□□□□□ -2.19
RNF4P78317 MIR150-201ENST00000385048 84 ntBASIC1.38□□□□□ -2.19
RNF4P78317 SNORD124-201ENST00000459577 104 ntBASIC1.38□□□□□ -2.19
RNF4P78317 MIR3064-201ENST00000581130 66 ntBASIC1.38□□□□□ -2.19
RNF4P78317 AC104996.3-201ENST00000590718 94 ntBASIC1.38□□□□□ -2.19
RNF4P78317 Y_RNA.221-201ENST00000364248 96 ntBASIC1.37□□□□□ -2.19
RNF4P78317 Y_RNA.316-201ENST00000365118 111 ntBASIC1.37□□□□□ -2.19
RNF4P78317 AL354695.1-201ENST00000427935 228 ntBASIC1.37□□□□□ -2.19
RNF4P78317 SNORA31.14-201ENST00000516728 116 ntBASIC1.37□□□□□ -2.19
RNF4P78317 AC140658.3-201ENST00000567603 271 ntBASIC1.37□□□□□ -2.19
RNF4P78317 MIR4796-201ENST00000580742 81 ntBASIC1.37□□□□□ -2.19
RNF4P78317 U6.100-201ENST00000636230 99 ntBASIC1.37□□□□□ -2.19
RNF4P78317 MIR942-201ENST00000401111 86 ntBASIC1.36□□□□□ -2.19
RNF4P78317 SNORA25.13-201ENST00000516395 103 ntBASIC1.36□□□□□ -2.19
RNF4P78317 SNORA18.5-201ENST00000516616 101 ntBASIC1.36□□□□□ -2.19
RNF4P78317 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
RNF4P78317 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
RNF4P78317 MIR26B-201ENST00000362251 77 ntBASIC1.35□□□□□ -2.19
RNF4P78317 MIR548U-201ENST00000390728 81 ntBASIC1.35□□□□□ -2.19
RNF4P78317 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
RNF4P78317 RNU6-638P-201ENST00000516582 104 ntBASIC1.35□□□□□ -2.19
RNF4P78317 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC1.35□□□□□ -2.19
RNF4P78317 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.35□□□□□ -2.19
RNF4P78317 MIR378A-201ENST00000362177 66 ntBASIC1.34□□□□□ -2.19
RNF4P78317 Y_RNA.491-201ENST00000384417 107 ntBASIC1.34□□□□□ -2.19
RNF4P78317 AL359821.1-201ENST00000605519 182 ntBASIC1.34□□□□□ -2.19
RNF4P78317 uc_338.16-201ENST00000621804 95 ntBASIC1.34□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 219 ms