Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 RNU1-36P-201ENST00000365130 165 ntBASIC1.08□□□□□ -2.24
TTC3P53804 RNU6-480P-201ENST00000384332 107 ntBASIC1.08□□□□□ -2.24
TTC3P53804 SNORA25-201ENST00000384384 134 ntBASIC1.08□□□□□ -2.24
TTC3P53804 MIR598-201ENST00000384868 97 ntBASIC1.08□□□□□ -2.24
TTC3P53804 MIR1255A-201ENST00000408338 113 ntBASIC1.08□□□□□ -2.24
TTC3P53804 MIR6779-201ENST00000617283 64 ntBASIC1.08□□□□□ -2.24
TTC3P53804 AC023934.1-201ENST00000574529 2389 ntBASIC1.07□□□□□ -2.24
TTC3P53804 RNU6-369P-201ENST00000362515 102 ntBASIC1.07□□□□□ -2.24
TTC3P53804 RNU6-1065P-201ENST00000384513 106 ntBASIC1.07□□□□□ -2.24
TTC3P53804 MIR19B1-201ENST00000384829 87 ntBASIC1.07□□□□□ -2.24
TTC3P53804 MIR181B2-201ENST00000385004 89 ntBASIC1.07□□□□□ -2.24
TTC3P53804 RPS26P5-201ENST00000418544 335 ntBASIC1.07□□□□□ -2.24
TTC3P53804 RNU7-102P-201ENST00000458948 62 ntBASIC1.07□□□□□ -2.24
TTC3P53804 RNU7-21P-201ENST00000459430 62 ntBASIC1.07□□□□□ -2.24
TTC3P53804 RNU6-977P-201ENST00000516411 103 ntBASIC1.07□□□□□ -2.24
TTC3P53804 AC062037.1-201ENST00000605302 128 ntBASIC1.07□□□□□ -2.24
TTC3P53804 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
TTC3P53804 Y_RNA.57-201ENST00000362806 113 ntBASIC1.06□□□□□ -2.24
TTC3P53804 RNU6-531P-201ENST00000516694 104 ntBASIC1.06□□□□□ -2.24
TTC3P53804 SNORD92-201ENST00000585078 85 ntBASIC1.06□□□□□ -2.24
TTC3P53804 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.06□□□□□ -2.24
TTC3P53804 AC025521.1-201ENST00000621624 286 ntBASIC1.06□□□□□ -2.24
TTC3P53804 MIR101-2-201ENST00000362195 79 ntBASIC1.06□□□□□ -2.24
TTC3P53804 TRAJ51-201ENST00000504127 63 ntBASIC1.06□□□□□ -2.24
TTC3P53804 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.06□□□□□ -2.24
TTC3P53804 RNU6-403P-201ENST00000363163 104 ntBASIC1.05□□□□□ -2.24
TTC3P53804 RNU6-571P-201ENST00000384128 107 ntBASIC1.05□□□□□ -2.24
TTC3P53804 SNORA80D-201ENST00000384488 135 ntBASIC1.05□□□□□ -2.24
TTC3P53804 RNU6-813P-201ENST00000384691 107 ntBASIC1.05□□□□□ -2.24
TTC3P53804 MIR588-201ENST00000384900 83 ntBASIC1.05□□□□□ -2.24
TTC3P53804 SNORD89-201ENST00000390981 114 ntBASIC1.05□□□□□ -2.24
TTC3P53804 Y_RNA.588-201ENST00000391254 102 ntBASIC1.05□□□□□ -2.24
TTC3P53804 RNU6-1254P-201ENST00000391266 104 ntBASIC1.05□□□□□ -2.24
TTC3P53804 MIR1257-201ENST00000408490 117 ntBASIC1.05□□□□□ -2.24
TTC3P53804 AC020891.4-201ENST00000605745 93 ntBASIC1.05□□□□□ -2.24
TTC3P53804 AC106800.4-201ENST00000614905 153 ntBASIC1.05□□□□□ -2.24
TTC3P53804 MIR8066-201ENST00000617280 78 ntBASIC1.05□□□□□ -2.24
TTC3P53804 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
TTC3P53804 RNU6-1134P-201ENST00000365156 101 ntBASIC1.05□□□□□ -2.24
TTC3P53804 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.05□□□□□ -2.24
TTC3P53804 Y_RNA.620-201ENST00000411009 88 ntBASIC1.05□□□□□ -2.24
TTC3P53804 SPINT5P-201ENST00000448174 155 ntBASIC1.05□□□□□ -2.24
TTC3P53804 SNORA25.16-201ENST00000516741 121 ntBASIC1.05□□□□□ -2.24
TTC3P53804 RNU6-850P-201ENST00000516934 103 ntBASIC1.05□□□□□ -2.24
TTC3P53804 MIR4536-1-201ENST00000583537 88 ntBASIC1.05□□□□□ -2.24
TTC3P53804 Y_RNA.98-201ENST00000363109 102 ntBASIC1.04□□□□□ -2.24
TTC3P53804 MIR519C-201ENST00000385053 87 ntBASIC1.04□□□□□ -2.24
TTC3P53804 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.04□□□□□ -2.24
TTC3P53804 AC087499.7-201ENST00000441958 109 ntBASIC1.04□□□□□ -2.24
TTC3P53804 RNU6-267P-201ENST00000516714 103 ntBASIC1.04□□□□□ -2.24
TTC3P53804 MIR3973-201ENST00000579824 107 ntBASIC1.04□□□□□ -2.24
TTC3P53804 Y_RNA.119-201ENST00000363301 96 ntBASIC1.03□□□□□ -2.24
TTC3P53804 RNU6-509P-201ENST00000363519 107 ntBASIC1.03□□□□□ -2.24
TTC3P53804 RNU6-243P-201ENST00000391140 107 ntBASIC1.03□□□□□ -2.24
TTC3P53804 snoMBII-202.2-201ENST00000517263 86 ntBASIC1.03□□□□□ -2.24
TTC3P53804 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.03□□□□□ -2.24
TTC3P53804 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
TTC3P53804 Y_RNA.17-201ENST00000362433 111 ntBASIC1.03□□□□□ -2.25
TTC3P53804 RNU6-524P-201ENST00000384270 107 ntBASIC1.03□□□□□ -2.25
TTC3P53804 Y_RNA.567-201ENST00000384736 106 ntBASIC1.03□□□□□ -2.25
TTC3P53804 Y_RNA.593-201ENST00000410292 98 ntBASIC1.03□□□□□ -2.25
TTC3P53804 RNU7-171P-201ENST00000459581 62 ntBASIC1.03□□□□□ -2.25
TTC3P53804 MIR4771-2-201ENST00000577758 74 ntBASIC1.03□□□□□ -2.25
TTC3P53804 MIR4771-1-201ENST00000582617 74 ntBASIC1.03□□□□□ -2.25
TTC3P53804 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.03□□□□□ -2.25
TTC3P53804 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.02□□□□□ -2.25
TTC3P53804 Y_RNA.536-201ENST00000384621 113 ntBASIC1.02□□□□□ -2.25
TTC3P53804 RNU7-40P-201ENST00000516397 64 ntBASIC1.02□□□□□ -2.25
TTC3P53804 Y_RNA.697-201ENST00000516776 113 ntBASIC1.02□□□□□ -2.25
TTC3P53804 RNU7-156P-201ENST00000517214 74 ntBASIC1.02□□□□□ -2.25
TTC3P53804 AC138907.6-201ENST00000568401 126 ntBASIC1.02□□□□□ -2.25
TTC3P53804 AC138869.1-201ENST00000568623 124 ntBASIC1.02□□□□□ -2.25
TTC3P53804 AC103810.7-201ENST00000607821 91 ntBASIC1.02□□□□□ -2.25
TTC3P53804 RNU6-624P-201ENST00000363411 107 ntBASIC1.01□□□□□ -2.25
TTC3P53804 SNORD115-27-201ENST00000364430 82 ntBASIC1.01□□□□□ -2.25
TTC3P53804 RNU6-1275P-201ENST00000391087 107 ntBASIC1.01□□□□□ -2.25
TTC3P53804 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.01□□□□□ -2.25
TTC3P53804 RNU6-75P-201ENST00000515944 104 ntBASIC1.01□□□□□ -2.25
TTC3P53804 AC013244.2-201ENST00000603396 103 ntBASIC1.01□□□□□ -2.25
TTC3P53804 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.01□□□□□ -2.25
TTC3P53804 RNU6-1244P-201ENST00000363614 108 ntBASIC1.01□□□□□ -2.25
TTC3P53804 SNORD115-37-201ENST00000363768 82 ntBASIC1.01□□□□□ -2.25
TTC3P53804 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
TTC3P53804 AL606490.4-201ENST00000423117 127 ntBASIC1.01□□□□□ -2.25
TTC3P53804 SNORD4B-201ENST00000459083 72 ntBASIC1.01□□□□□ -2.25
TTC3P53804 OR2A41P-201ENST00000473586 105 ntBASIC1.01□□□□□ -2.25
TTC3P53804 MIR548H5-201ENST00000580314 60 ntBASIC1.01□□□□□ -2.25
TTC3P53804 RNU7-10P-201ENST00000607194 63 ntBASIC1.01□□□□□ -2.25
TTC3P53804 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.01□□□□□ -2.25
TTC3P53804 RNU1-124P-201ENST00000363861 145 ntBASIC1□□□□□ -2.25
TTC3P53804 MIR520F-201ENST00000384824 87 ntBASIC1□□□□□ -2.25
TTC3P53804 AC022137.1-201ENST00000483735 151 ntBASIC1□□□□□ -2.25
TTC3P53804 RNU6-765P-201ENST00000516916 99 ntBASIC1□□□□□ -2.25
TTC3P53804 MIR6082-201ENST00000613604 109 ntBASIC1□□□□□ -2.25
TTC3P53804 RNU6-664P-201ENST00000362381 107 ntBASIC0.99□□□□□ -2.25
TTC3P53804 Y_RNA.611-201ENST00000410682 108 ntBASIC0.99□□□□□ -2.25
TTC3P53804 SNORD83.1-201ENST00000411362 77 ntBASIC0.99□□□□□ -2.25
TTC3P53804 SNRPGP12-201ENST00000449481 213 ntBASIC0.99□□□□□ -2.25
TTC3P53804 RNA5SP404-201ENST00000517118 132 ntBASIC0.99□□□□□ -2.25
TTC3P53804 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.99□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 192.5 ms