Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 MIR573-201ENST00000384964 99 ntBASIC0.75□□□□□ -2.29
CLCN3P51790 RNU1-119P-201ENST00000391122 165 ntBASIC0.75□□□□□ -2.29
CLCN3P51790 uc_338.16-201ENST00000621804 95 ntBASIC0.75□□□□□ -2.29
CLCN3P51790 RNU6-1163P-201ENST00000364516 107 ntBASIC0.74□□□□□ -2.29
CLCN3P51790 Y_RNA.536-201ENST00000384621 113 ntBASIC0.74□□□□□ -2.29
CLCN3P51790 Y_RNA.540-201ENST00000384638 111 ntBASIC0.74□□□□□ -2.29
CLCN3P51790 RNU6-291P-201ENST00000384720 107 ntBASIC0.74□□□□□ -2.29
CLCN3P51790 MIR519A1-201ENST00000385257 85 ntBASIC0.74□□□□□ -2.29
CLCN3P51790 MIR1302-5-201ENST00000408164 150 ntBASIC0.74□□□□□ -2.29
CLCN3P51790 MIR548G-201ENST00000408442 89 ntBASIC0.74□□□□□ -2.29
CLCN3P51790 Y_RNA.601-201ENST00000410500 113 ntBASIC0.74□□□□□ -2.29
CLCN3P51790 AC244098.3-201ENST00000424803 96 ntBASIC0.74□□□□□ -2.29
CLCN3P51790 AC002350.1-201ENST00000490759 375 ntBASIC0.74□□□□□ -2.29
CLCN3P51790 RNU6-448P-201ENST00000517052 107 ntBASIC0.74□□□□□ -2.29
CLCN3P51790 AC141557.1-201ENST00000540982 400 ntBASIC0.74□□□□□ -2.29
CLCN3P51790 AL590095.2-201ENST00000604136 117 ntBASIC0.74□□□□□ -2.29
CLCN3P51790 Y_RNA.56-201ENST00000362798 112 ntBASIC0.73□□□□□ -2.29
CLCN3P51790 RNU4-45P-201ENST00000365469 141 ntBASIC0.73□□□□□ -2.29
CLCN3P51790 RNU6-147P-201ENST00000383983 107 ntBASIC0.73□□□□□ -2.29
CLCN3P51790 SNORA72.6-201ENST00000384520 129 ntBASIC0.73□□□□□ -2.29
CLCN3P51790 MIR590-201ENST00000385008 97 ntBASIC0.73□□□□□ -2.29
CLCN3P51790 RNU6-158P-201ENST00000517104 100 ntBASIC0.73□□□□□ -2.29
CLCN3P51790 DEFB131E-201ENST00000532329 154 ntBASIC0.73□□□□□ -2.29
CLCN3P51790 MIR4500-201ENST00000579472 76 ntBASIC0.73□□□□□ -2.29
CLCN3P51790 MIR4439-201ENST00000583746 80 ntBASIC0.73□□□□□ -2.29
CLCN3P51790 Y_RNA.818-201ENST00000618813 71 ntBASIC0.73□□□□□ -2.29
CLCN3P51790 AC091304.10-201ENST00000641554 121 ntBASIC0.73□□□□□ -2.29
CLCN3P51790 RNU6-153P-201ENST00000364422 104 ntBASIC0.72□□□□□ -2.29
CLCN3P51790 RNU6-756P-201ENST00000383997 107 ntBASIC0.72□□□□□ -2.29
CLCN3P51790 SNORA51.5-201ENST00000384126 131 ntBASIC0.72□□□□□ -2.29
CLCN3P51790 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.72□□□□□ -2.29
CLCN3P51790 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.72□□□□□ -2.29
CLCN3P51790 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.72□□□□□ -2.29
CLCN3P51790 MIR4777-201ENST00000583710 86 ntBASIC0.72□□□□□ -2.29
CLCN3P51790 Y_RNA.10-201ENST00000362371 110 ntBASIC0.71□□□□□ -2.3
CLCN3P51790 Y_RNA.32-201ENST00000362589 110 ntBASIC0.71□□□□□ -2.3
CLCN3P51790 RNU6-1244P-201ENST00000363614 108 ntBASIC0.71□□□□□ -2.3
CLCN3P51790 RNU4-36P-201ENST00000364294 144 ntBASIC0.71□□□□□ -2.3
CLCN3P51790 SNORD38.2-201ENST00000384470 69 ntBASIC0.71□□□□□ -2.3
CLCN3P51790 BX276092.1-201ENST00000427368 251 ntBASIC0.71□□□□□ -2.3
CLCN3P51790 RNU6-850P-201ENST00000516934 103 ntBASIC0.71□□□□□ -2.3
CLCN3P51790 AC011195.1-201ENST00000578177 177 ntBASIC0.71□□□□□ -2.3
CLCN3P51790 RNU6-90P-201ENST00000606352 106 ntBASIC0.71□□□□□ -2.3
CLCN3P51790 AC012531.4-201ENST00000616509 177 ntBASIC0.71□□□□□ -2.3
CLCN3P51790 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.71□□□□□ -2.3
CLCN3P51790 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.7□□□□□ -2.3
CLCN3P51790 MIR450A1-201ENST00000362262 91 ntBASIC0.7□□□□□ -2.3
CLCN3P51790 RNU6-170P-201ENST00000362832 104 ntBASIC0.7□□□□□ -2.3
CLCN3P51790 Y_RNA.95-201ENST00000363079 95 ntBASIC0.7□□□□□ -2.3
CLCN3P51790 RNA5SP245-201ENST00000364239 121 ntBASIC0.7□□□□□ -2.3
CLCN3P51790 RNU6-1113P-201ENST00000384348 107 ntBASIC0.7□□□□□ -2.3
CLCN3P51790 AL031737.1-201ENST00000450125 223 ntBASIC0.7□□□□□ -2.3
CLCN3P51790 AC244505.6-201ENST00000452829 130 ntBASIC0.7□□□□□ -2.3
CLCN3P51790 TRAJ51-201ENST00000504127 63 ntBASIC0.7□□□□□ -2.3
CLCN3P51790 SCARNA23-201ENST00000516060 130 ntBASIC0.7□□□□□ -2.3
CLCN3P51790 SNORA31.14-201ENST00000516728 116 ntBASIC0.7□□□□□ -2.3
CLCN3P51790 Y_RNA.697-201ENST00000516776 113 ntBASIC0.7□□□□□ -2.3
CLCN3P51790 AC096720.1-201ENST00000604441 183 ntBASIC0.7□□□□□ -2.3
CLCN3P51790 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.69□□□□□ -2.3
CLCN3P51790 SNORD45B-201ENST00000364617 72 ntBASIC0.69□□□□□ -2.3
CLCN3P51790 AC092628.1-201ENST00000436250 252 ntBASIC0.69□□□□□ -2.3
CLCN3P51790 AC109327.2-201ENST00000448339 378 ntBASIC0.69□□□□□ -2.3
CLCN3P51790 MIR3612-201ENST00000579753 87 ntBASIC0.69□□□□□ -2.3
CLCN3P51790 MIR548H5-201ENST00000580314 60 ntBASIC0.69□□□□□ -2.3
CLCN3P51790 MIR548Z-201ENST00000584743 97 ntBASIC0.69□□□□□ -2.3
CLCN3P51790 Y_RNA.174-201ENST00000363781 105 ntBASIC0.68□□□□□ -2.3
CLCN3P51790 Y_RNA.342-201ENST00000365352 113 ntBASIC0.68□□□□□ -2.3
CLCN3P51790 RNU6-535P-201ENST00000384722 107 ntBASIC0.68□□□□□ -2.3
CLCN3P51790 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.68□□□□□ -2.3
CLCN3P51790 RNU7-106P-201ENST00000459514 67 ntBASIC0.68□□□□□ -2.3
CLCN3P51790 RNU6-109P-201ENST00000516364 107 ntBASIC0.68□□□□□ -2.3
CLCN3P51790 RNU6-184P-201ENST00000516514 107 ntBASIC0.68□□□□□ -2.3
CLCN3P51790 MIR6513-201ENST00000621188 64 ntBASIC0.68□□□□□ -2.3
CLCN3P51790 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.68□□□□□ -2.3
CLCN3P51790 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.68□□□□□ -2.3
CLCN3P51790 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
CLCN3P51790 MIR101-2-201ENST00000362195 79 ntBASIC0.67□□□□□ -2.3
CLCN3P51790 MIR18A-201ENST00000362310 71 ntBASIC0.67□□□□□ -2.3
CLCN3P51790 Y_RNA.93-201ENST00000363066 109 ntBASIC0.67□□□□□ -2.3
CLCN3P51790 RNA5SP499-201ENST00000363982 119 ntBASIC0.67□□□□□ -2.3
CLCN3P51790 Y_RNA.348-201ENST00000365403 103 ntBASIC0.67□□□□□ -2.3
CLCN3P51790 Y_RNA.567-201ENST00000384736 106 ntBASIC0.67□□□□□ -2.3
CLCN3P51790 SNORD63B-201ENST00000411005 70 ntBASIC0.67□□□□□ -2.3
CLCN3P51790 SPINT5P-201ENST00000448174 155 ntBASIC0.67□□□□□ -2.3
CLCN3P51790 RNU6-795P-201ENST00000516323 103 ntBASIC0.67□□□□□ -2.3
CLCN3P51790 MTND5P40-201ENST00000559945 246 ntBASIC0.67□□□□□ -2.3
CLCN3P51790 RNU7-10P-201ENST00000607194 63 ntBASIC0.67□□□□□ -2.3
CLCN3P51790 AP001318.4-201ENST00000616637 121 ntBASIC0.67□□□□□ -2.3
CLCN3P51790 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.67□□□□□ -2.3
CLCN3P51790 SNORD36A-201ENST00000362874 73 ntBASIC0.66□□□□□ -2.3
CLCN3P51790 RNY1P8-201ENST00000383970 114 ntBASIC0.66□□□□□ -2.3
CLCN3P51790 Y_RNA.467-201ENST00000384297 102 ntBASIC0.66□□□□□ -2.3
CLCN3P51790 Y_RNA.544-201ENST00000384650 113 ntBASIC0.66□□□□□ -2.3
CLCN3P51790 AL606490.4-201ENST00000423117 127 ntBASIC0.66□□□□□ -2.3
CLCN3P51790 AC097635.1-201ENST00000450678 155 ntBASIC0.66□□□□□ -2.3
CLCN3P51790 RNA5SP480-201ENST00000516840 109 ntBASIC0.66□□□□□ -2.3
CLCN3P51790 RNU6-1260P-201ENST00000362944 107 ntBASIC0.65□□□□□ -2.31
CLCN3P51790 RNU6-32P-201ENST00000383948 107 ntBASIC0.65□□□□□ -2.31
CLCN3P51790 RNU6-13P-201ENST00000384248 107 ntBASIC0.65□□□□□ -2.31
CLCN3P51790 RNU6-12P-201ENST00000384604 107 ntBASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 215.4 ms