Protein–RNA interactions for Protein: P48059

LIMS1, LIM and senescent cell antigen-like-containing domain protein 1, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1P48059 Y_RNA.56-201ENST00000362798 112 ntBASIC1.55□□□□□ -2.16
LIMS1P48059 RNU6-1260P-201ENST00000362944 107 ntBASIC1.55□□□□□ -2.16
LIMS1P48059 SNORD113.3-201ENST00000364630 78 ntBASIC1.55□□□□□ -2.16
LIMS1P48059 Y_RNA.491-201ENST00000384417 107 ntBASIC1.55□□□□□ -2.16
LIMS1P48059 Y_RNA.565-201ENST00000384719 101 ntBASIC1.55□□□□□ -2.16
LIMS1P48059 MIR518E-201ENST00000385252 88 ntBASIC1.55□□□□□ -2.16
LIMS1P48059 SNORA67.5-201ENST00000391036 107 ntBASIC1.55□□□□□ -2.16
LIMS1P48059 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.55□□□□□ -2.16
LIMS1P48059 MIR1287-201ENST00000408492 90 ntBASIC1.55□□□□□ -2.16
LIMS1P48059 RNU6-523P-201ENST00000516304 54 ntBASIC1.55□□□□□ -2.16
LIMS1P48059 AC036111.3-201ENST00000526389 112 ntBASIC1.55□□□□□ -2.16
LIMS1P48059 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.55□□□□□ -2.16
LIMS1P48059 Y_RNA.788-201ENST00000622394 112 ntBASIC1.55□□□□□ -2.16
LIMS1P48059 Y_RNA.13-201ENST00000362403 112 ntBASIC1.54□□□□□ -2.16
LIMS1P48059 Y_RNA.42-201ENST00000362660 108 ntBASIC1.54□□□□□ -2.16
LIMS1P48059 RNA5SP363-201ENST00000365072 115 ntBASIC1.54□□□□□ -2.16
LIMS1P48059 MIR635-201ENST00000384830 98 ntBASIC1.54□□□□□ -2.16
LIMS1P48059 SNORA75.2-201ENST00000391138 150 ntBASIC1.54□□□□□ -2.16
LIMS1P48059 SNORA75.3-201ENST00000391231 150 ntBASIC1.54□□□□□ -2.16
LIMS1P48059 RPS27P16-201ENST00000425758 201 ntBASIC1.54□□□□□ -2.16
LIMS1P48059 RNU7-195P-201ENST00000458793 62 ntBASIC1.54□□□□□ -2.16
LIMS1P48059 AC048334.1-201ENST00000477975 159 ntBASIC1.54□□□□□ -2.16
LIMS1P48059 MIR101-2-201ENST00000362195 79 ntBASIC1.53□□□□□ -2.16
LIMS1P48059 RNU6-161P-201ENST00000363051 106 ntBASIC1.53□□□□□ -2.16
LIMS1P48059 RNA5SP190-201ENST00000365222 118 ntBASIC1.53□□□□□ -2.16
LIMS1P48059 Y_RNA.532-201ENST00000384590 113 ntBASIC1.53□□□□□ -2.16
LIMS1P48059 RNU6-997P-201ENST00000384725 107 ntBASIC1.53□□□□□ -2.16
LIMS1P48059 SNORD83.1-201ENST00000411362 77 ntBASIC1.53□□□□□ -2.16
LIMS1P48059 AC092628.1-201ENST00000436250 252 ntBASIC1.53□□□□□ -2.16
LIMS1P48059 MIR4255-201ENST00000579351 72 ntBASIC1.53□□□□□ -2.16
LIMS1P48059 MIRLET7F1-201ENST00000362202 87 ntBASIC1.52□□□□□ -2.17
LIMS1P48059 Y_RNA.363-201ENST00000365529 113 ntBASIC1.52□□□□□ -2.17
LIMS1P48059 Y_RNA.545-201ENST00000384652 105 ntBASIC1.52□□□□□ -2.17
LIMS1P48059 MIR125B2-201ENST00000385128 89 ntBASIC1.52□□□□□ -2.17
LIMS1P48059 AC004223.1-201ENST00000479840 271 ntBASIC1.52□□□□□ -2.17
LIMS1P48059 RNU6-1108P-201ENST00000516308 104 ntBASIC1.52□□□□□ -2.17
LIMS1P48059 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.52□□□□□ -2.17
LIMS1P48059 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
LIMS1P48059 SNORA25.9-201ENST00000365087 128 ntBASIC1.51□□□□□ -2.17
LIMS1P48059 RNU6-934P-201ENST00000365154 107 ntBASIC1.51□□□□□ -2.17
LIMS1P48059 SNORD77.2-201ENST00000391045 68 ntBASIC1.51□□□□□ -2.17
LIMS1P48059 RNU1-78P-201ENST00000391248 165 ntBASIC1.51□□□□□ -2.17
LIMS1P48059 AL606490.4-201ENST00000423117 127 ntBASIC1.51□□□□□ -2.17
LIMS1P48059 AC097635.1-201ENST00000450678 155 ntBASIC1.51□□□□□ -2.17
LIMS1P48059 SCARNA18B-201ENST00000458806 135 ntBASIC1.51□□□□□ -2.17
LIMS1P48059 Y_RNA.809-201ENST00000516058 95 ntBASIC1.51□□□□□ -2.17
LIMS1P48059 AC106800.4-201ENST00000614905 153 ntBASIC1.51□□□□□ -2.17
LIMS1P48059 TRDV1-202ENST00000621643 102 ntBASIC1.51□□□□□ -2.17
LIMS1P48059 AC084768.2-201ENST00000622736 221 ntBASIC1.51□□□□□ -2.17
LIMS1P48059 SNORD90-201ENST00000391145 111 ntBASIC1.5□□□□□ -2.17
LIMS1P48059 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
LIMS1P48059 RNU6-380P-201ENST00000410207 107 ntBASIC1.5□□□□□ -2.17
LIMS1P48059 AC008834.1-201ENST00000511612 175 ntBASIC1.5□□□□□ -2.17
LIMS1P48059 SNORA31.2-201ENST00000516019 134 ntBASIC1.5□□□□□ -2.17
LIMS1P48059 RNU6-448P-201ENST00000517052 107 ntBASIC1.5□□□□□ -2.17
LIMS1P48059 AL645939.4-201ENST00000604495 135 ntBASIC1.5□□□□□ -2.17
LIMS1P48059 MTRNR2L2-201ENST00000604882 87 ntBASIC1.5□□□□□ -2.17
LIMS1P48059 MIR502-201ENST00000606349 86 ntBASIC1.5□□□□□ -2.17
LIMS1P48059 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.5□□□□□ -2.17
LIMS1P48059 Y_RNA.264-201ENST00000364665 102 ntBASIC1.49□□□□□ -2.17
LIMS1P48059 Y_RNA.330-201ENST00000365230 109 ntBASIC1.49□□□□□ -2.17
LIMS1P48059 SNORD111-201ENST00000408139 94 ntBASIC1.49□□□□□ -2.17
LIMS1P48059 RNU6-321P-201ENST00000410912 106 ntBASIC1.49□□□□□ -2.17
LIMS1P48059 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.49□□□□□ -2.17
LIMS1P48059 MIR4771-2-201ENST00000577758 74 ntBASIC1.49□□□□□ -2.17
LIMS1P48059 MIR4422-201ENST00000581938 83 ntBASIC1.49□□□□□ -2.17
LIMS1P48059 MIR4771-1-201ENST00000582617 74 ntBASIC1.49□□□□□ -2.17
LIMS1P48059 AL359821.1-201ENST00000605519 182 ntBASIC1.49□□□□□ -2.17
LIMS1P48059 AL161722.3-201ENST00000605789 2983 ntBASIC1.49□□□□□ -2.17
LIMS1P48059 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
LIMS1P48059 RNU6-208P-201ENST00000362431 107 ntBASIC1.48□□□□□ -2.17
LIMS1P48059 RNU6-369P-201ENST00000362515 102 ntBASIC1.48□□□□□ -2.17
LIMS1P48059 RPS26P5-201ENST00000418544 335 ntBASIC1.48□□□□□ -2.17
LIMS1P48059 AC015818.7-201ENST00000428754 109 ntBASIC1.48□□□□□ -2.17
LIMS1P48059 SNORD13-201ENST00000459299 104 ntBASIC1.48□□□□□ -2.17
LIMS1P48059 RNU7-21P-201ENST00000459430 62 ntBASIC1.48□□□□□ -2.17
LIMS1P48059 RNU6-1265P-201ENST00000516342 103 ntBASIC1.48□□□□□ -2.17
LIMS1P48059 RNU7-40P-201ENST00000516397 64 ntBASIC1.48□□□□□ -2.17
LIMS1P48059 Y_RNA.697-201ENST00000516776 113 ntBASIC1.48□□□□□ -2.17
LIMS1P48059 RN7SKP88-201ENST00000516847 250 ntBASIC1.48□□□□□ -2.17
LIMS1P48059 MIR3134-201ENST00000579433 74 ntBASIC1.48□□□□□ -2.17
LIMS1P48059 7SK.8-201ENST00000612110 250 ntBASIC1.48□□□□□ -2.17
LIMS1P48059 7SK.11-201ENST00000615477 250 ntBASIC1.48□□□□□ -2.17
LIMS1P48059 7SK.13-201ENST00000622040 250 ntBASIC1.48□□□□□ -2.17
LIMS1P48059 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.48□□□□□ -2.17
LIMS1P48059 U6.100-201ENST00000636230 99 ntBASIC1.48□□□□□ -2.17
LIMS1P48059 MIR499A-201ENST00000384903 122 ntBASIC1.47□□□□□ -2.17
LIMS1P48059 MIR320A-201ENST00000385302 82 ntBASIC1.47□□□□□ -2.17
LIMS1P48059 RNU6-788P-201ENST00000390967 104 ntBASIC1.47□□□□□ -2.17
LIMS1P48059 AC074348.1-201ENST00000426503 132 ntBASIC1.47□□□□□ -2.17
LIMS1P48059 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.47□□□□□ -2.17
LIMS1P48059 TRMT112P2-201ENST00000512910 132 ntBASIC1.47□□□□□ -2.17
LIMS1P48059 RNU6-902P-201ENST00000517212 91 ntBASIC1.47□□□□□ -2.17
LIMS1P48059 MIR1297-201ENST00000637311 77 ntBASIC1.47□□□□□ -2.17
LIMS1P48059 MIR934-201ENST00000401241 83 ntBASIC1.46□□□□□ -2.18
LIMS1P48059 RNU7-156P-201ENST00000517214 74 ntBASIC1.46□□□□□ -2.18
LIMS1P48059 AC138907.6-201ENST00000568401 126 ntBASIC1.46□□□□□ -2.18
LIMS1P48059 AC138869.1-201ENST00000568623 124 ntBASIC1.46□□□□□ -2.18
LIMS1P48059 MIR4696-201ENST00000581431 70 ntBASIC1.46□□□□□ -2.18
LIMS1P48059 MIR4676-201ENST00000583078 72 ntBASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 169.7 ms