Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 Y_RNA.426-201ENST00000384068 113 ntBASIC1.84□□□□□ -2.11
RFX1P22670 MIR222-201ENST00000384992 110 ntBASIC1.84□□□□□ -2.11
RFX1P22670 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.84□□□□□ -2.11
RFX1P22670 MIR938-201ENST00000401216 83 ntBASIC1.84□□□□□ -2.11
RFX1P22670 SNORD100-201ENST00000408573 76 ntBASIC1.84□□□□□ -2.11
RFX1P22670 MIR3122-201ENST00000577243 73 ntBASIC1.84□□□□□ -2.11
RFX1P22670 MIR4303-201ENST00000581299 66 ntBASIC1.84□□□□□ -2.11
RFX1P22670 RNU7-10P-201ENST00000607194 63 ntBASIC1.84□□□□□ -2.11
RFX1P22670 MIR548BB-201ENST00000626714 66 ntBASIC1.84□□□□□ -2.11
RFX1P22670 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
RFX1P22670 MIR1-1-201ENST00000362147 71 ntBASIC1.83□□□□□ -2.12
RFX1P22670 RNU6-509P-201ENST00000363519 107 ntBASIC1.83□□□□□ -2.12
RFX1P22670 AC006160.2-201ENST00000637708 154 ntBASIC1.83□□□□□ -2.12
RFX1P22670 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
RFX1P22670 RNU6-633P-201ENST00000362612 103 ntBASIC1.82□□□□□ -2.12
RFX1P22670 Y_RNA.327-201ENST00000365201 102 ntBASIC1.82□□□□□ -2.12
RFX1P22670 RNU6-364P-201ENST00000384387 107 ntBASIC1.82□□□□□ -2.12
RFX1P22670 MIR516A2-201ENST00000384888 90 ntBASIC1.82□□□□□ -2.12
RFX1P22670 MIR516A1-201ENST00000385033 90 ntBASIC1.82□□□□□ -2.12
RFX1P22670 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.82□□□□□ -2.12
RFX1P22670 AC067940.1-201ENST00000458411 300 ntBASIC1.82□□□□□ -2.12
RFX1P22670 RNU1-92P-201ENST00000517017 135 ntBASIC1.82□□□□□ -2.12
RFX1P22670 MIR4804-201ENST00000581683 73 ntBASIC1.82□□□□□ -2.12
RFX1P22670 AL078603.1-201ENST00000603824 313 ntBASIC1.82□□□□□ -2.12
RFX1P22670 AC012493.3-201ENST00000604494 112 ntBASIC1.82□□□□□ -2.12
RFX1P22670 Y_RNA.56-201ENST00000362798 112 ntBASIC1.81□□□□□ -2.12
RFX1P22670 Y_RNA.244-201ENST00000364484 109 ntBASIC1.81□□□□□ -2.12
RFX1P22670 MIR635-201ENST00000384830 98 ntBASIC1.81□□□□□ -2.12
RFX1P22670 RNU6-279P-201ENST00000391297 101 ntBASIC1.81□□□□□ -2.12
RFX1P22670 MIR1827-201ENST00000408549 66 ntBASIC1.81□□□□□ -2.12
RFX1P22670 RNU6-977P-201ENST00000516411 103 ntBASIC1.81□□□□□ -2.12
RFX1P22670 MIR548H5-201ENST00000580314 60 ntBASIC1.81□□□□□ -2.12
RFX1P22670 AL645939.4-201ENST00000604495 135 ntBASIC1.81□□□□□ -2.12
RFX1P22670 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.81□□□□□ -2.12
RFX1P22670 SNORD36A-201ENST00000362874 73 ntBASIC1.8□□□□□ -2.12
RFX1P22670 MIR100-201ENST00000385259 80 ntBASIC1.8□□□□□ -2.12
RFX1P22670 RNU6-1254P-201ENST00000391266 104 ntBASIC1.8□□□□□ -2.12
RFX1P22670 RNU7-56P-201ENST00000458744 62 ntBASIC1.8□□□□□ -2.12
RFX1P22670 RNU7-95P-201ENST00000459222 64 ntBASIC1.8□□□□□ -2.12
RFX1P22670 RNU7-106P-201ENST00000459514 67 ntBASIC1.8□□□□□ -2.12
RFX1P22670 MIR6734-201ENST00000621166 68 ntBASIC1.8□□□□□ -2.12
RFX1P22670 SNORD115-27-201ENST00000364430 82 ntBASIC1.79□□□□□ -2.12
RFX1P22670 Y_RNA.536-201ENST00000384621 113 ntBASIC1.79□□□□□ -2.12
RFX1P22670 MIR519A1-201ENST00000385257 85 ntBASIC1.79□□□□□ -2.12
RFX1P22670 SNORD63B-201ENST00000411005 70 ntBASIC1.79□□□□□ -2.12
RFX1P22670 AL161932.1-201ENST00000437408 146 ntBASIC1.79□□□□□ -2.12
RFX1P22670 RPS29P23-201ENST00000458635 123 ntBASIC1.79□□□□□ -2.12
RFX1P22670 AC023790.1-201ENST00000482174 347 ntBASIC1.79□□□□□ -2.12
RFX1P22670 RNU6-857P-201ENST00000515893 110 ntBASIC1.79□□□□□ -2.12
RFX1P22670 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.78□□□□□ -2.12
RFX1P22670 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.78□□□□□ -2.12
RFX1P22670 RNU6-652P-201ENST00000365488 107 ntBASIC1.77□□□□□ -2.13
RFX1P22670 MIR200A-201ENST00000384875 90 ntBASIC1.77□□□□□ -2.13
RFX1P22670 FABP5P4-201ENST00000437203 171 ntBASIC1.77□□□□□ -2.13
RFX1P22670 RNU7-102P-201ENST00000458948 62 ntBASIC1.77□□□□□ -2.13
RFX1P22670 TRAJ51-201ENST00000504127 63 ntBASIC1.77□□□□□ -2.13
RFX1P22670 Y_RNA.697-201ENST00000516776 113 ntBASIC1.77□□□□□ -2.13
RFX1P22670 AL157834.3-201ENST00000615543 103 ntBASIC1.77□□□□□ -2.13
RFX1P22670 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.76□□□□□ -2.13
RFX1P22670 Y_RNA.221-201ENST00000364248 96 ntBASIC1.76□□□□□ -2.13
RFX1P22670 RNU6-42P-201ENST00000384165 107 ntBASIC1.76□□□□□ -2.13
RFX1P22670 RNU6-243P-201ENST00000391140 107 ntBASIC1.76□□□□□ -2.13
RFX1P22670 Y_RNA.607-201ENST00000410597 98 ntBASIC1.76□□□□□ -2.13
RFX1P22670 Y_RNA.648-201ENST00000459455 110 ntBASIC1.76□□□□□ -2.13
RFX1P22670 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.76□□□□□ -2.13
RFX1P22670 RNU6-1110P-201ENST00000516462 101 ntBASIC1.76□□□□□ -2.13
RFX1P22670 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC1.76□□□□□ -2.13
RFX1P22670 AL136317.1-201ENST00000612653 226 ntBASIC1.76□□□□□ -2.13
RFX1P22670 RNU6-524P-201ENST00000384270 107 ntBASIC1.75□□□□□ -2.13
RFX1P22670 RNU1-119P-201ENST00000391122 165 ntBASIC1.75□□□□□ -2.13
RFX1P22670 RNU6-519P-201ENST00000410590 108 ntBASIC1.75□□□□□ -2.13
RFX1P22670 AC092628.1-201ENST00000436250 252 ntBASIC1.75□□□□□ -2.13
RFX1P22670 AC008608.1-201ENST00000603910 127 ntBASIC1.75□□□□□ -2.13
RFX1P22670 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC1.75□□□□□ -2.13
RFX1P22670 RNU1-124P-201ENST00000363861 145 ntBASIC1.74□□□□□ -2.13
RFX1P22670 SNORA67.6-201ENST00000391093 99 ntBASIC1.74□□□□□ -2.13
RFX1P22670 U7.7-201ENST00000459276 60 ntBASIC1.74□□□□□ -2.13
RFX1P22670 RNU6-448P-201ENST00000517052 107 ntBASIC1.74□□□□□ -2.13
RFX1P22670 MIR6504-201ENST00000613520 61 ntBASIC1.74□□□□□ -2.13
RFX1P22670 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
RFX1P22670 Y_RNA.316-201ENST00000365118 111 ntBASIC1.73□□□□□ -2.13
RFX1P22670 RNU6-24P-201ENST00000384440 107 ntBASIC1.73□□□□□ -2.13
RFX1P22670 MIR520F-201ENST00000384824 87 ntBASIC1.73□□□□□ -2.13
RFX1P22670 MIR519C-201ENST00000385053 87 ntBASIC1.73□□□□□ -2.13
RFX1P22670 SNORD4B-201ENST00000459083 72 ntBASIC1.73□□□□□ -2.13
RFX1P22670 RNA5SP220-201ENST00000516298 104 ntBASIC1.73□□□□□ -2.13
RFX1P22670 SNORA7.1-201ENST00000363750 139 ntBASIC1.72□□□□□ -2.13
RFX1P22670 RNU1-42P-201ENST00000364033 160 ntBASIC1.72□□□□□ -2.13
RFX1P22670 RNU6-535P-201ENST00000384722 107 ntBASIC1.72□□□□□ -2.13
RFX1P22670 MIR7-2-201ENST00000384970 110 ntBASIC1.72□□□□□ -2.13
RFX1P22670 RNU7-85P-201ENST00000458851 63 ntBASIC1.72□□□□□ -2.13
RFX1P22670 snoU13.11-201ENST00000459219 104 ntBASIC1.72□□□□□ -2.13
RFX1P22670 RNU7-195P-201ENST00000458793 62 ntBASIC1.71□□□□□ -2.14
RFX1P22670 RMST_2.1-201ENST00000617263 136 ntBASIC1.71□□□□□ -2.14
RFX1P22670 RNU6-291P-201ENST00000384720 107 ntBASIC1.7□□□□□ -2.14
RFX1P22670 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC1.7□□□□□ -2.14
RFX1P22670 AC093729.1-201ENST00000513074 128 ntBASIC1.7□□□□□ -2.14
RFX1P22670 AC019288.1-201ENST00000557918 224 ntBASIC1.7□□□□□ -2.14
RFX1P22670 AC138907.6-201ENST00000568401 126 ntBASIC1.7□□□□□ -2.14
RFX1P22670 AC138869.1-201ENST00000568623 124 ntBASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 206.1 ms