Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 MIR573-201ENST00000384964 99 ntBASIC0.97□□□□□ -2.25
PCDHA3Q9Y5H8 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.97□□□□□ -2.25
PCDHA3Q9Y5H8 AC013244.2-201ENST00000603396 103 ntBASIC0.97□□□□□ -2.25
PCDHA3Q9Y5H8 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
PCDHA3Q9Y5H8 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.96□□□□□ -2.26
PCDHA3Q9Y5H8 HSBP1P2-201ENST00000299671 229 ntBASIC0.96□□□□□ -2.26
PCDHA3Q9Y5H8 MIR96-201ENST00000362288 78 ntBASIC0.96□□□□□ -2.26
PCDHA3Q9Y5H8 RNU6-1187P-201ENST00000364771 110 ntBASIC0.96□□□□□ -2.26
PCDHA3Q9Y5H8 RNU6-1325P-201ENST00000364905 105 ntBASIC0.96□□□□□ -2.26
PCDHA3Q9Y5H8 SNORD38.2-201ENST00000384470 69 ntBASIC0.96□□□□□ -2.26
PCDHA3Q9Y5H8 SNORD100-201ENST00000408573 76 ntBASIC0.96□□□□□ -2.26
PCDHA3Q9Y5H8 Y_RNA.709-201ENST00000516952 92 ntBASIC0.96□□□□□ -2.26
PCDHA3Q9Y5H8 RNU6-1006P-201ENST00000516998 103 ntBASIC0.96□□□□□ -2.26
PCDHA3Q9Y5H8 MIR4500-201ENST00000579472 76 ntBASIC0.96□□□□□ -2.26
PCDHA3Q9Y5H8 Y_RNA.116-201ENST00000363292 103 ntBASIC0.95□□□□□ -2.26
PCDHA3Q9Y5H8 SNORD114-22-201ENST00000365423 72 ntBASIC0.95□□□□□ -2.26
PCDHA3Q9Y5H8 Y_RNA.377-201ENST00000365644 108 ntBASIC0.95□□□□□ -2.26
PCDHA3Q9Y5H8 RNU6-1014P-201ENST00000383940 103 ntBASIC0.95□□□□□ -2.26
PCDHA3Q9Y5H8 RNU6-1201P-201ENST00000384227 107 ntBASIC0.95□□□□□ -2.26
PCDHA3Q9Y5H8 MIR608-201ENST00000384820 100 ntBASIC0.95□□□□□ -2.26
PCDHA3Q9Y5H8 AC002350.1-201ENST00000490759 375 ntBASIC0.95□□□□□ -2.26
PCDHA3Q9Y5H8 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.95□□□□□ -2.26
PCDHA3Q9Y5H8 MIR4694-201ENST00000578534 80 ntBASIC0.95□□□□□ -2.26
PCDHA3Q9Y5H8 Y_RNA.536-201ENST00000384621 113 ntBASIC0.94□□□□□ -2.26
PCDHA3Q9Y5H8 AC244098.3-201ENST00000424803 96 ntBASIC0.94□□□□□ -2.26
PCDHA3Q9Y5H8 Y_RNA.697-201ENST00000516776 113 ntBASIC0.94□□□□□ -2.26
PCDHA3Q9Y5H8 AL442128.1-201ENST00000615151 90 ntBASIC0.94□□□□□ -2.26
PCDHA3Q9Y5H8 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC0.94□□□□□ -2.26
PCDHA3Q9Y5H8 Y_RNA.56-201ENST00000362798 112 ntBASIC0.93□□□□□ -2.26
PCDHA3Q9Y5H8 SNORD38.1-201ENST00000363863 68 ntBASIC0.93□□□□□ -2.26
PCDHA3Q9Y5H8 MIR577-201ENST00000385196 96 ntBASIC0.93□□□□□ -2.26
PCDHA3Q9Y5H8 AC004941.2-201ENST00000427009 228 ntBASIC0.93□□□□□ -2.26
PCDHA3Q9Y5H8 MIR101-2-201ENST00000362195 79 ntBASIC0.92□□□□□ -2.26
PCDHA3Q9Y5H8 RNY3P2-201ENST00000362918 102 ntBASIC0.92□□□□□ -2.26
PCDHA3Q9Y5H8 RNU1-93P-201ENST00000364704 169 ntBASIC0.92□□□□□ -2.26
PCDHA3Q9Y5H8 RNU6-215P-201ENST00000365169 102 ntBASIC0.92□□□□□ -2.26
PCDHA3Q9Y5H8 MIR518E-201ENST00000385252 88 ntBASIC0.92□□□□□ -2.26
PCDHA3Q9Y5H8 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.92□□□□□ -2.26
PCDHA3Q9Y5H8 AC011195.1-201ENST00000578177 177 ntBASIC0.92□□□□□ -2.26
PCDHA3Q9Y5H8 AL078603.1-201ENST00000603824 313 ntBASIC0.92□□□□□ -2.26
PCDHA3Q9Y5H8 AC211469.2-201ENST00000605461 205 ntBASIC0.92□□□□□ -2.26
PCDHA3Q9Y5H8 RNU6-832P-201ENST00000363319 107 ntBASIC0.91□□□□□ -2.26
PCDHA3Q9Y5H8 RNU6-1099P-201ENST00000363533 107 ntBASIC0.91□□□□□ -2.26
PCDHA3Q9Y5H8 Y_RNA.174-201ENST00000363781 105 ntBASIC0.91□□□□□ -2.26
PCDHA3Q9Y5H8 RNU4-45P-201ENST00000365469 141 ntBASIC0.91□□□□□ -2.26
PCDHA3Q9Y5H8 RNU6-291P-201ENST00000384720 107 ntBASIC0.91□□□□□ -2.26
PCDHA3Q9Y5H8 MIR532-201ENST00000385025 91 ntBASIC0.91□□□□□ -2.26
PCDHA3Q9Y5H8 RPL39P28-201ENST00000465655 155 ntBASIC0.91□□□□□ -2.26
PCDHA3Q9Y5H8 ACA64.5-201ENST00000516207 127 ntBASIC0.91□□□□□ -2.26
PCDHA3Q9Y5H8 MIR548H5-201ENST00000580314 60 ntBASIC0.91□□□□□ -2.26
PCDHA3Q9Y5H8 AC096720.1-201ENST00000604441 183 ntBASIC0.91□□□□□ -2.26
PCDHA3Q9Y5H8 RNU7-10P-201ENST00000607194 63 ntBASIC0.91□□□□□ -2.26
PCDHA3Q9Y5H8 Y_RNA.78-201ENST00000362970 110 ntBASIC0.9□□□□□ -2.27
PCDHA3Q9Y5H8 RNA5SP117-201ENST00000365294 118 ntBASIC0.9□□□□□ -2.27
PCDHA3Q9Y5H8 RNU6-571P-201ENST00000384128 107 ntBASIC0.9□□□□□ -2.27
PCDHA3Q9Y5H8 SNORD20-201ENST00000384550 80 ntBASIC0.9□□□□□ -2.27
PCDHA3Q9Y5H8 RNU6-535P-201ENST00000384722 107 ntBASIC0.9□□□□□ -2.27
PCDHA3Q9Y5H8 RNY4P18-201ENST00000391107 89 ntBASIC0.9□□□□□ -2.27
PCDHA3Q9Y5H8 SNRPGP12-201ENST00000449481 213 ntBASIC0.9□□□□□ -2.27
PCDHA3Q9Y5H8 MIR3612-201ENST00000579753 87 ntBASIC0.9□□□□□ -2.27
PCDHA3Q9Y5H8 uc_338.16-201ENST00000621804 95 ntBASIC0.9□□□□□ -2.27
PCDHA3Q9Y5H8 RNU6-351P-201ENST00000516097 100 ntBASIC0.89□□□□□ -2.27
PCDHA3Q9Y5H8 RNU6-919P-201ENST00000516731 104 ntBASIC0.89□□□□□ -2.27
PCDHA3Q9Y5H8 RNU6-90P-201ENST00000606352 106 ntBASIC0.89□□□□□ -2.27
PCDHA3Q9Y5H8 Y_RNA.163-201ENST00000363702 113 ntBASIC0.88□□□□□ -2.27
PCDHA3Q9Y5H8 Y_RNA.247-201ENST00000364500 92 ntBASIC0.88□□□□□ -2.27
PCDHA3Q9Y5H8 MIR1302-5-201ENST00000408164 150 ntBASIC0.88□□□□□ -2.27
PCDHA3Q9Y5H8 MIR548G-201ENST00000408442 89 ntBASIC0.88□□□□□ -2.27
PCDHA3Q9Y5H8 RNA5SP220-201ENST00000516298 104 ntBASIC0.88□□□□□ -2.27
PCDHA3Q9Y5H8 AC141557.1-201ENST00000540982 400 ntBASIC0.88□□□□□ -2.27
PCDHA3Q9Y5H8 MTND5P40-201ENST00000559945 246 ntBASIC0.88□□□□□ -2.27
PCDHA3Q9Y5H8 MIR6857-201ENST00000613267 93 ntBASIC0.88□□□□□ -2.27
PCDHA3Q9Y5H8 MIR6767-201ENST00000637302 66 ntBASIC0.88□□□□□ -2.27
PCDHA3Q9Y5H8 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.88□□□□□ -2.27
PCDHA3Q9Y5H8 Y_RNA.10-201ENST00000362371 110 ntBASIC0.87□□□□□ -2.27
PCDHA3Q9Y5H8 SNORD114-2-201ENST00000363953 78 ntBASIC0.87□□□□□ -2.27
PCDHA3Q9Y5H8 RNU6-106P-201ENST00000384405 107 ntBASIC0.87□□□□□ -2.27
PCDHA3Q9Y5H8 Y_RNA.508-201ENST00000384502 114 ntBASIC0.87□□□□□ -2.27
PCDHA3Q9Y5H8 RNU6-110P-201ENST00000384508 104 ntBASIC0.87□□□□□ -2.27
PCDHA3Q9Y5H8 MIR520E-201ENST00000384867 87 ntBASIC0.87□□□□□ -2.27
PCDHA3Q9Y5H8 BX276092.1-201ENST00000427368 251 ntBASIC0.87□□□□□ -2.27
PCDHA3Q9Y5H8 SNORA31.14-201ENST00000516728 116 ntBASIC0.87□□□□□ -2.27
PCDHA3Q9Y5H8 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.87□□□□□ -2.27
PCDHA3Q9Y5H8 MIR18A-201ENST00000362310 71 ntBASIC0.86□□□□□ -2.27
PCDHA3Q9Y5H8 Y_RNA.173-201ENST00000363776 113 ntBASIC0.86□□□□□ -2.27
PCDHA3Q9Y5H8 RNU4-36P-201ENST00000364294 144 ntBASIC0.86□□□□□ -2.27
PCDHA3Q9Y5H8 MIR635-201ENST00000384830 98 ntBASIC0.86□□□□□ -2.27
PCDHA3Q9Y5H8 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.86□□□□□ -2.27
PCDHA3Q9Y5H8 RPS29P1-201ENST00000465274 159 ntBASIC0.86□□□□□ -2.27
PCDHA3Q9Y5H8 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.86□□□□□ -2.27
PCDHA3Q9Y5H8 RNU6-135P-201ENST00000516769 101 ntBASIC0.86□□□□□ -2.27
PCDHA3Q9Y5H8 AC138907.6-201ENST00000568401 126 ntBASIC0.86□□□□□ -2.27
PCDHA3Q9Y5H8 AC138869.1-201ENST00000568623 124 ntBASIC0.86□□□□□ -2.27
PCDHA3Q9Y5H8 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.86□□□□□ -2.27
PCDHA3Q9Y5H8 MIR6734-201ENST00000621166 68 ntBASIC0.86□□□□□ -2.27
PCDHA3Q9Y5H8 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.86□□□□□ -2.27
PCDHA3Q9Y5H8 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.85□□□□□ -2.27
PCDHA3Q9Y5H8 Y_RNA.32-201ENST00000362589 110 ntBASIC0.85□□□□□ -2.27
PCDHA3Q9Y5H8 RNU6-755P-201ENST00000364400 103 ntBASIC0.85□□□□□ -2.27
PCDHA3Q9Y5H8 Y_RNA.355-201ENST00000365462 98 ntBASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 179.2 ms