Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 RNU6-762P-201ENST00000517107 102 ntBASIC1.51□□□□□ -2.17
CCDC9Q9Y3X0 MALAT1.1-201ENST00000618249 95 ntBASIC1.51□□□□□ -2.17
CCDC9Q9Y3X0 SNORD115-2-201ENST00000362842 82 ntBASIC1.5□□□□□ -2.17
CCDC9Q9Y3X0 RNU6-363P-201ENST00000362895 105 ntBASIC1.5□□□□□ -2.17
CCDC9Q9Y3X0 RNU6-1099P-201ENST00000363533 107 ntBASIC1.5□□□□□ -2.17
CCDC9Q9Y3X0 Y_RNA.155-201ENST00000363632 101 ntBASIC1.5□□□□□ -2.17
CCDC9Q9Y3X0 SNORD115-20-201ENST00000365099 82 ntBASIC1.5□□□□□ -2.17
CCDC9Q9Y3X0 RNU6-1237P-201ENST00000384777 107 ntBASIC1.5□□□□□ -2.17
CCDC9Q9Y3X0 Y_RNA.601-201ENST00000410500 113 ntBASIC1.5□□□□□ -2.17
CCDC9Q9Y3X0 RNU4-69P-201ENST00000410677 143 ntBASIC1.5□□□□□ -2.17
CCDC9Q9Y3X0 RNU4-67P-201ENST00000364569 141 ntBASIC1.49□□□□□ -2.17
CCDC9Q9Y3X0 Y_RNA.342-201ENST00000365352 113 ntBASIC1.49□□□□□ -2.17
CCDC9Q9Y3X0 RNU6-409P-201ENST00000384114 104 ntBASIC1.49□□□□□ -2.17
CCDC9Q9Y3X0 RNY1P7-201ENST00000384743 110 ntBASIC1.49□□□□□ -2.17
CCDC9Q9Y3X0 MIR563-201ENST00000385080 79 ntBASIC1.49□□□□□ -2.17
CCDC9Q9Y3X0 RNU6-733P-201ENST00000410759 104 ntBASIC1.49□□□□□ -2.17
CCDC9Q9Y3X0 RNU6-977P-201ENST00000516411 103 ntBASIC1.49□□□□□ -2.17
CCDC9Q9Y3X0 MIR4694-201ENST00000578534 80 ntBASIC1.49□□□□□ -2.17
CCDC9Q9Y3X0 Y_RNA.773-201ENST00000607168 90 ntBASIC1.49□□□□□ -2.17
CCDC9Q9Y3X0 uc_338.6-201ENST00000613544 171 ntBASIC1.49□□□□□ -2.17
CCDC9Q9Y3X0 MIR1255B1-201ENST00000636325 63 ntBASIC1.49□□□□□ -2.17
CCDC9Q9Y3X0 Y_RNA.171-201ENST00000363760 102 ntBASIC1.48□□□□□ -2.17
CCDC9Q9Y3X0 Y_RNA.388-201ENST00000383919 113 ntBASIC1.48□□□□□ -2.17
CCDC9Q9Y3X0 SNORD77B-201ENST00000391112 67 ntBASIC1.48□□□□□ -2.17
CCDC9Q9Y3X0 RNU6-1258P-201ENST00000516911 111 ntBASIC1.48□□□□□ -2.17
CCDC9Q9Y3X0 MIR373-201ENST00000362273 69 ntBASIC1.47□□□□□ -2.17
CCDC9Q9Y3X0 Y_RNA.360-201ENST00000365512 102 ntBASIC1.47□□□□□ -2.17
CCDC9Q9Y3X0 MIR193B-201ENST00000384907 83 ntBASIC1.47□□□□□ -2.17
CCDC9Q9Y3X0 MIR577-201ENST00000385196 96 ntBASIC1.47□□□□□ -2.17
CCDC9Q9Y3X0 MIR1257-201ENST00000408490 117 ntBASIC1.47□□□□□ -2.17
CCDC9Q9Y3X0 RNA5SP33-201ENST00000516687 98 ntBASIC1.47□□□□□ -2.17
CCDC9Q9Y3X0 CYP3A137P-201ENST00000562436 69 ntBASIC1.47□□□□□ -2.17
CCDC9Q9Y3X0 AL662814.1-201ENST00000617364 121 ntBASIC1.47□□□□□ -2.17
CCDC9Q9Y3X0 AC023934.1-201ENST00000574529 2389 ntBASIC1.47□□□□□ -2.17
CCDC9Q9Y3X0 RNU6-832P-201ENST00000363319 107 ntBASIC1.46□□□□□ -2.18
CCDC9Q9Y3X0 MIR548AE2-201ENST00000583456 67 ntBASIC1.46□□□□□ -2.18
CCDC9Q9Y3X0 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.46□□□□□ -2.18
CCDC9Q9Y3X0 RNU1-36P-201ENST00000365130 165 ntBASIC1.45□□□□□ -2.18
CCDC9Q9Y3X0 RNU6-820P-201ENST00000384273 107 ntBASIC1.45□□□□□ -2.18
CCDC9Q9Y3X0 Y_RNA.470-201ENST00000384307 117 ntBASIC1.45□□□□□ -2.18
CCDC9Q9Y3X0 MIR450A2-201ENST00000385022 100 ntBASIC1.45□□□□□ -2.18
CCDC9Q9Y3X0 MIR605-201ENST00000385078 83 ntBASIC1.45□□□□□ -2.18
CCDC9Q9Y3X0 SNORD105-201ENST00000386910 85 ntBASIC1.45□□□□□ -2.18
CCDC9Q9Y3X0 SNORA7.5-201ENST00000410672 110 ntBASIC1.45□□□□□ -2.18
CCDC9Q9Y3X0 AC096949.1-201ENST00000412047 152 ntBASIC1.45□□□□□ -2.18
CCDC9Q9Y3X0 AC015818.7-201ENST00000428754 109 ntBASIC1.45□□□□□ -2.18
CCDC9Q9Y3X0 AC087499.7-201ENST00000441958 109 ntBASIC1.45□□□□□ -2.18
CCDC9Q9Y3X0 AC026421.1-201ENST00000519101 163 ntBASIC1.45□□□□□ -2.18
CCDC9Q9Y3X0 AC062037.1-201ENST00000605302 128 ntBASIC1.45□□□□□ -2.18
CCDC9Q9Y3X0 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.45□□□□□ -2.18
CCDC9Q9Y3X0 RNU6-170P-201ENST00000362832 104 ntBASIC1.44□□□□□ -2.18
CCDC9Q9Y3X0 RNU6-1134P-201ENST00000365156 101 ntBASIC1.44□□□□□ -2.18
CCDC9Q9Y3X0 RNU6-1335P-201ENST00000365426 107 ntBASIC1.44□□□□□ -2.18
CCDC9Q9Y3X0 Y_RNA.377-201ENST00000365644 108 ntBASIC1.44□□□□□ -2.18
CCDC9Q9Y3X0 RNU6-616P-201ENST00000384353 107 ntBASIC1.44□□□□□ -2.18
CCDC9Q9Y3X0 SNORA18-201ENST00000384416 132 ntBASIC1.44□□□□□ -2.18
CCDC9Q9Y3X0 MIR520F-201ENST00000384824 87 ntBASIC1.44□□□□□ -2.18
CCDC9Q9Y3X0 RNU6-679P-201ENST00000391003 106 ntBASIC1.44□□□□□ -2.18
CCDC9Q9Y3X0 AC004941.2-201ENST00000427009 228 ntBASIC1.44□□□□□ -2.18
CCDC9Q9Y3X0 RN7SKP12-201ENST00000516275 143 ntBASIC1.44□□□□□ -2.18
CCDC9Q9Y3X0 RNU6-1018P-201ENST00000516577 106 ntBASIC1.44□□□□□ -2.18
CCDC9Q9Y3X0 MIR30D-201ENST00000362283 70 ntBASIC1.43□□□□□ -2.18
CCDC9Q9Y3X0 Y_RNA.96-201ENST00000363092 109 ntBASIC1.43□□□□□ -2.18
CCDC9Q9Y3X0 SNORD45B-201ENST00000364617 72 ntBASIC1.43□□□□□ -2.18
CCDC9Q9Y3X0 AL353813.1-201ENST00000440700 253 ntBASIC1.43□□□□□ -2.18
CCDC9Q9Y3X0 MIR1270-201ENST00000459320 83 ntBASIC1.43□□□□□ -2.18
CCDC9Q9Y3X0 RNU7-61P-201ENST00000515897 61 ntBASIC1.43□□□□□ -2.18
CCDC9Q9Y3X0 RNU6ATAC17P-201ENST00000516074 71 ntBASIC1.43□□□□□ -2.18
CCDC9Q9Y3X0 ACA64.5-201ENST00000516207 127 ntBASIC1.43□□□□□ -2.18
CCDC9Q9Y3X0 RNU6-795P-201ENST00000516323 103 ntBASIC1.43□□□□□ -2.18
CCDC9Q9Y3X0 snoMBII-202.2-201ENST00000517263 86 ntBASIC1.43□□□□□ -2.18
CCDC9Q9Y3X0 MIR1273G-201ENST00000577677 100 ntBASIC1.43□□□□□ -2.18
CCDC9Q9Y3X0 MIR4676-201ENST00000583078 72 ntBASIC1.43□□□□□ -2.18
CCDC9Q9Y3X0 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.43□□□□□ -2.18
CCDC9Q9Y3X0 AC012531.4-201ENST00000616509 177 ntBASIC1.43□□□□□ -2.18
CCDC9Q9Y3X0 Y_RNA.290-201ENST00000364879 114 ntBASIC1.42□□□□□ -2.18
CCDC9Q9Y3X0 RNU6-1201P-201ENST00000384227 107 ntBASIC1.42□□□□□ -2.18
CCDC9Q9Y3X0 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
CCDC9Q9Y3X0 RNU7-185P-201ENST00000459215 60 ntBASIC1.42□□□□□ -2.18
CCDC9Q9Y3X0 RNU6-521P-201ENST00000516663 105 ntBASIC1.42□□□□□ -2.18
CCDC9Q9Y3X0 RNU6-369P-201ENST00000362515 102 ntBASIC1.41□□□□□ -2.18
CCDC9Q9Y3X0 RNA5SP173-201ENST00000364857 136 ntBASIC1.41□□□□□ -2.18
CCDC9Q9Y3X0 SNORA32-201ENST00000384072 121 ntBASIC1.41□□□□□ -2.18
CCDC9Q9Y3X0 MIR608-201ENST00000384820 100 ntBASIC1.41□□□□□ -2.18
CCDC9Q9Y3X0 RNU6-644P-201ENST00000391155 98 ntBASIC1.41□□□□□ -2.18
CCDC9Q9Y3X0 SNORD99-201ENST00000408612 74 ntBASIC1.41□□□□□ -2.18
CCDC9Q9Y3X0 AP003327.1-201ENST00000529684 127 ntBASIC1.41□□□□□ -2.18
CCDC9Q9Y3X0 MIR3973-201ENST00000579824 107 ntBASIC1.41□□□□□ -2.18
CCDC9Q9Y3X0 AC096720.1-201ENST00000604441 183 ntBASIC1.41□□□□□ -2.18
CCDC9Q9Y3X0 U7.3-201ENST00000616123 62 ntBASIC1.41□□□□□ -2.18
CCDC9Q9Y3X0 AL512310.12-203ENST00000640543 90 ntBASIC1.41□□□□□ -2.18
CCDC9Q9Y3X0 MIR494-201ENST00000349529 81 ntBASIC1.4□□□□□ -2.19
CCDC9Q9Y3X0 RNU6-1313P-201ENST00000362622 102 ntBASIC1.4□□□□□ -2.19
CCDC9Q9Y3X0 Y_RNA.95-201ENST00000363079 95 ntBASIC1.4□□□□□ -2.19
CCDC9Q9Y3X0 MIR938-201ENST00000401216 83 ntBASIC1.4□□□□□ -2.19
CCDC9Q9Y3X0 Y_RNA.659-201ENST00000515994 113 ntBASIC1.4□□□□□ -2.19
CCDC9Q9Y3X0 AC141846.1-201ENST00000568348 142 ntBASIC1.4□□□□□ -2.19
CCDC9Q9Y3X0 MIR4777-201ENST00000583710 86 ntBASIC1.4□□□□□ -2.19
CCDC9Q9Y3X0 AL353765.1-201ENST00000605514 183 ntBASIC1.4□□□□□ -2.19
CCDC9Q9Y3X0 AC020891.4-201ENST00000605745 93 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 176.3 ms