Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RNU6-571P-201ENST00000384128 107 ntBASIC1.91□□□□□ -2.1
CCDC87Q9NVE4 RNU6-820P-201ENST00000384273 107 ntBASIC1.91□□□□□ -2.1
CCDC87Q9NVE4 SNORA80D-201ENST00000384488 135 ntBASIC1.91□□□□□ -2.1
CCDC87Q9NVE4 SNORD93-201ENST00000408813 74 ntBASIC1.91□□□□□ -2.1
CCDC87Q9NVE4 MIR4500-201ENST00000579472 76 ntBASIC1.91□□□□□ -2.1
CCDC87Q9NVE4 AC090897.1-201ENST00000580909 226 ntBASIC1.91□□□□□ -2.1
CCDC87Q9NVE4 SNORA26.2-201ENST00000390922 122 ntBASIC1.9□□□□□ -2.11
CCDC87Q9NVE4 AL354695.1-201ENST00000427935 228 ntBASIC1.9□□□□□ -2.11
CCDC87Q9NVE4 AC036111.3-201ENST00000526389 112 ntBASIC1.9□□□□□ -2.11
CCDC87Q9NVE4 MIR4285-201ENST00000581001 85 ntBASIC1.9□□□□□ -2.11
CCDC87Q9NVE4 RNU4-58P-201ENST00000363192 141 ntBASIC1.89□□□□□ -2.11
CCDC87Q9NVE4 RNU1-36P-201ENST00000365130 165 ntBASIC1.89□□□□□ -2.11
CCDC87Q9NVE4 SNORA75.2-201ENST00000391138 150 ntBASIC1.89□□□□□ -2.11
CCDC87Q9NVE4 SNORA75.3-201ENST00000391231 150 ntBASIC1.89□□□□□ -2.11
CCDC87Q9NVE4 SNRPGP12-201ENST00000449481 213 ntBASIC1.89□□□□□ -2.11
CCDC87Q9NVE4 RNU1-98P-201ENST00000458992 160 ntBASIC1.89□□□□□ -2.11
CCDC87Q9NVE4 RNU6-1194P-201ENST00000516208 104 ntBASIC1.89□□□□□ -2.11
CCDC87Q9NVE4 MIR4491-201ENST00000581087 68 ntBASIC1.89□□□□□ -2.11
CCDC87Q9NVE4 MIR6078-201ENST00000611069 100 ntBASIC1.89□□□□□ -2.11
CCDC87Q9NVE4 SNORD116-22-201ENST00000384430 92 ntBASIC1.88□□□□□ -2.11
CCDC87Q9NVE4 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.88□□□□□ -2.11
CCDC87Q9NVE4 RNU7-21P-201ENST00000459430 62 ntBASIC1.88□□□□□ -2.11
CCDC87Q9NVE4 AC106800.4-201ENST00000614905 153 ntBASIC1.88□□□□□ -2.11
CCDC87Q9NVE4 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
CCDC87Q9NVE4 Y_RNA.190-201ENST00000363964 101 ntBASIC1.87□□□□□ -2.11
CCDC87Q9NVE4 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.87□□□□□ -2.11
CCDC87Q9NVE4 MIR1257-201ENST00000408490 117 ntBASIC1.87□□□□□ -2.11
CCDC87Q9NVE4 RNU7-185P-201ENST00000459215 60 ntBASIC1.87□□□□□ -2.11
CCDC87Q9NVE4 RNU6-762P-201ENST00000517107 102 ntBASIC1.87□□□□□ -2.11
CCDC87Q9NVE4 RNU6-934P-201ENST00000365154 107 ntBASIC1.86□□□□□ -2.11
CCDC87Q9NVE4 Y_RNA.588-201ENST00000391254 102 ntBASIC1.86□□□□□ -2.11
CCDC87Q9NVE4 RNY4P29-201ENST00000410801 97 ntBASIC1.86□□□□□ -2.11
CCDC87Q9NVE4 RNU7-90P-201ENST00000459216 62 ntBASIC1.86□□□□□ -2.11
CCDC87Q9NVE4 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.86□□□□□ -2.11
CCDC87Q9NVE4 MIR8066-201ENST00000617280 78 ntBASIC1.86□□□□□ -2.11
CCDC87Q9NVE4 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.85□□□□□ -2.11
CCDC87Q9NVE4 AC023934.1-201ENST00000574529 2389 ntBASIC1.85□□□□□ -2.11
CCDC87Q9NVE4 Y_RNA.17-201ENST00000362433 111 ntBASIC1.85□□□□□ -2.11
CCDC87Q9NVE4 Y_RNA.363-201ENST00000365529 113 ntBASIC1.85□□□□□ -2.11
CCDC87Q9NVE4 MIR181B2-201ENST00000385004 89 ntBASIC1.85□□□□□ -2.11
CCDC87Q9NVE4 RNU6-910P-201ENST00000390844 107 ntBASIC1.85□□□□□ -2.11
CCDC87Q9NVE4 SNORD12-201ENST00000391002 90 ntBASIC1.85□□□□□ -2.11
CCDC87Q9NVE4 MIR1304-201ENST00000408243 91 ntBASIC1.85□□□□□ -2.11
CCDC87Q9NVE4 RNU6ATAC17P-201ENST00000516074 71 ntBASIC1.85□□□□□ -2.11
CCDC87Q9NVE4 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.85□□□□□ -2.11
CCDC87Q9NVE4 SNORD79.1-201ENST00000516069 84 ntBASIC1.84□□□□□ -2.11
CCDC87Q9NVE4 RNU6-850P-201ENST00000516934 103 ntBASIC1.84□□□□□ -2.11
CCDC87Q9NVE4 AC022709.1-201ENST00000615967 87 ntBASIC1.84□□□□□ -2.11
CCDC87Q9NVE4 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
CCDC87Q9NVE4 MIR96-201ENST00000362288 78 ntBASIC1.83□□□□□ -2.12
CCDC87Q9NVE4 RNU4-83P-201ENST00000410863 133 ntBASIC1.83□□□□□ -2.12
CCDC87Q9NVE4 RN7SKP12-201ENST00000516275 143 ntBASIC1.83□□□□□ -2.12
CCDC87Q9NVE4 SNORA70.22-201ENST00000517160 124 ntBASIC1.83□□□□□ -2.12
CCDC87Q9NVE4 snoMBII-202.2-201ENST00000517263 86 ntBASIC1.83□□□□□ -2.12
CCDC87Q9NVE4 RNU6-403P-201ENST00000363163 104 ntBASIC1.82□□□□□ -2.12
CCDC87Q9NVE4 SNORD114-26-201ENST00000363543 72 ntBASIC1.82□□□□□ -2.12
CCDC87Q9NVE4 AL513043.2-201ENST00000573941 143 ntBASIC1.82□□□□□ -2.12
CCDC87Q9NVE4 IGLL4P-201ENST00000614590 133 ntBASIC1.82□□□□□ -2.12
CCDC87Q9NVE4 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
CCDC87Q9NVE4 Y_RNA.57-201ENST00000362806 113 ntBASIC1.81□□□□□ -2.12
CCDC87Q9NVE4 Y_RNA.593-201ENST00000410292 98 ntBASIC1.81□□□□□ -2.12
CCDC87Q9NVE4 SNORD83.1-201ENST00000411362 77 ntBASIC1.81□□□□□ -2.12
CCDC87Q9NVE4 RPS26P5-201ENST00000418544 335 ntBASIC1.81□□□□□ -2.12
CCDC87Q9NVE4 RNU6-531P-201ENST00000516694 104 ntBASIC1.81□□□□□ -2.12
CCDC87Q9NVE4 SNORA25.16-201ENST00000516741 121 ntBASIC1.81□□□□□ -2.12
CCDC87Q9NVE4 AC062037.1-201ENST00000605302 128 ntBASIC1.81□□□□□ -2.12
CCDC87Q9NVE4 RNU7-10P-201ENST00000607194 63 ntBASIC1.81□□□□□ -2.12
CCDC87Q9NVE4 RNU6-675P-201ENST00000384236 104 ntBASIC1.8□□□□□ -2.12
CCDC87Q9NVE4 SNORA72.6-201ENST00000384520 129 ntBASIC1.8□□□□□ -2.12
CCDC87Q9NVE4 MIR125B2-201ENST00000385128 89 ntBASIC1.8□□□□□ -2.12
CCDC87Q9NVE4 BX276092.1-201ENST00000427368 251 ntBASIC1.8□□□□□ -2.12
CCDC87Q9NVE4 snoU13.21-201ENST00000459368 105 ntBASIC1.8□□□□□ -2.12
CCDC87Q9NVE4 RNU6-765P-201ENST00000516916 99 ntBASIC1.8□□□□□ -2.12
CCDC87Q9NVE4 MIR6515-201ENST00000619843 57 ntBASIC1.8□□□□□ -2.12
CCDC87Q9NVE4 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.8□□□□□ -2.12
CCDC87Q9NVE4 RNY1P1-201ENST00000364372 112 ntBASIC1.79□□□□□ -2.12
CCDC87Q9NVE4 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.79□□□□□ -2.12
CCDC87Q9NVE4 AL161932.1-201ENST00000437408 146 ntBASIC1.79□□□□□ -2.12
CCDC87Q9NVE4 AC023827.1-201ENST00000569247 97 ntBASIC1.79□□□□□ -2.12
CCDC87Q9NVE4 MIR4771-2-201ENST00000577758 74 ntBASIC1.79□□□□□ -2.12
CCDC87Q9NVE4 MIR4668-201ENST00000582284 70 ntBASIC1.79□□□□□ -2.12
CCDC87Q9NVE4 MIR4771-1-201ENST00000582617 74 ntBASIC1.79□□□□□ -2.12
CCDC87Q9NVE4 MIR6082-201ENST00000613604 109 ntBASIC1.79□□□□□ -2.12
CCDC87Q9NVE4 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
CCDC87Q9NVE4 MIR101-2-201ENST00000362195 79 ntBASIC1.78□□□□□ -2.12
CCDC87Q9NVE4 AC025521.1-201ENST00000621624 286 ntBASIC1.78□□□□□ -2.12
CCDC87Q9NVE4 RNU1-93P-201ENST00000364704 169 ntBASIC1.77□□□□□ -2.13
CCDC87Q9NVE4 Y_RNA.388-201ENST00000383919 113 ntBASIC1.77□□□□□ -2.13
CCDC87Q9NVE4 RNU6-994P-201ENST00000410507 111 ntBASIC1.77□□□□□ -2.13
CCDC87Q9NVE4 MIR548H5-201ENST00000580314 60 ntBASIC1.77□□□□□ -2.13
CCDC87Q9NVE4 MIR6779-201ENST00000617283 64 ntBASIC1.77□□□□□ -2.13
CCDC87Q9NVE4 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
CCDC87Q9NVE4 MIR494-201ENST00000349529 81 ntBASIC1.76□□□□□ -2.13
CCDC87Q9NVE4 RNA5SP363-201ENST00000365072 115 ntBASIC1.76□□□□□ -2.13
CCDC87Q9NVE4 RNU6-402P-201ENST00000410678 103 ntBASIC1.76□□□□□ -2.13
CCDC87Q9NVE4 Y_RNA.620-201ENST00000411009 88 ntBASIC1.76□□□□□ -2.13
CCDC87Q9NVE4 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.76□□□□□ -2.13
CCDC87Q9NVE4 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
CCDC87Q9NVE4 RNU6-1152P-201ENST00000384576 107 ntBASIC1.75□□□□□ -2.13
CCDC87Q9NVE4 Y_RNA.609-201ENST00000410669 89 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 264.4 ms