Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 MIR548I2-201ENST00000408348 149 ntBASIC0.38□□□□□ -2.35
CCDC28BQ9BUN5 RNU6-1234P-201ENST00000516877 103 ntBASIC0.38□□□□□ -2.35
CCDC28BQ9BUN5 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.38□□□□□ -2.35
CCDC28BQ9BUN5 MTND5P18-201ENST00000445624 1801 ntBASIC0.38□□□□□ -2.35
CCDC28BQ9BUN5 RNU6-704P-201ENST00000364162 103 ntBASIC0.37□□□□□ -2.35
CCDC28BQ9BUN5 RNU6-1229P-201ENST00000364295 107 ntBASIC0.37□□□□□ -2.35
CCDC28BQ9BUN5 RNU6-1307P-201ENST00000391012 103 ntBASIC0.37□□□□□ -2.35
CCDC28BQ9BUN5 SNORD71-201ENST00000411292 86 ntBASIC0.37□□□□□ -2.35
CCDC28BQ9BUN5 RNU6-772P-201ENST00000516042 105 ntBASIC0.37□□□□□ -2.35
CCDC28BQ9BUN5 AC138869.1-201ENST00000568623 124 ntBASIC0.37□□□□□ -2.35
CCDC28BQ9BUN5 MIR4500-201ENST00000579472 76 ntBASIC0.37□□□□□ -2.35
CCDC28BQ9BUN5 Y_RNA.773-201ENST00000607168 90 ntBASIC0.37□□□□□ -2.35
CCDC28BQ9BUN5 MIR376B-201ENST00000614515 100 ntBASIC0.37□□□□□ -2.35
CCDC28BQ9BUN5 AC022709.1-201ENST00000615967 87 ntBASIC0.37□□□□□ -2.35
CCDC28BQ9BUN5 MIR5087-201ENST00000635826 76 ntBASIC0.37□□□□□ -2.35
CCDC28BQ9BUN5 MIR6828-201ENST00000636181 60 ntBASIC0.37□□□□□ -2.35
CCDC28BQ9BUN5 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.37□□□□□ -2.35
CCDC28BQ9BUN5 AL157777.2-201ENST00000258070 137 ntBASIC0.36□□□□□ -2.35
CCDC28BQ9BUN5 SNORA8.2-201ENST00000384372 139 ntBASIC0.36□□□□□ -2.35
CCDC28BQ9BUN5 SNORD28-201ENST00000384706 75 ntBASIC0.36□□□□□ -2.35
CCDC28BQ9BUN5 MIR598-201ENST00000384868 97 ntBASIC0.36□□□□□ -2.35
CCDC28BQ9BUN5 MIR518A1-201ENST00000385068 85 ntBASIC0.36□□□□□ -2.35
CCDC28BQ9BUN5 RNU6-735P-201ENST00000410612 107 ntBASIC0.36□□□□□ -2.35
CCDC28BQ9BUN5 AC244505.6-201ENST00000452829 130 ntBASIC0.36□□□□□ -2.35
CCDC28BQ9BUN5 RNU6-971P-201ENST00000516920 106 ntBASIC0.36□□□□□ -2.35
CCDC28BQ9BUN5 SCARNA16.5-201ENST00000517114 183 ntBASIC0.36□□□□□ -2.35
CCDC28BQ9BUN5 RNA5SP47-201ENST00000517230 109 ntBASIC0.36□□□□□ -2.35
CCDC28BQ9BUN5 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.36□□□□□ -2.35
CCDC28BQ9BUN5 SNORD118-201ENST00000363593 134 ntBASIC0.35□□□□□ -2.35
CCDC28BQ9BUN5 Y_RNA.360-201ENST00000365512 102 ntBASIC0.35□□□□□ -2.35
CCDC28BQ9BUN5 SNORA50A-201ENST00000384225 134 ntBASIC0.35□□□□□ -2.35
CCDC28BQ9BUN5 SNORD38.2-201ENST00000384470 69 ntBASIC0.35□□□□□ -2.35
CCDC28BQ9BUN5 MIR635-201ENST00000384830 98 ntBASIC0.35□□□□□ -2.35
CCDC28BQ9BUN5 RNU6-521P-201ENST00000516663 105 ntBASIC0.35□□□□□ -2.35
CCDC28BQ9BUN5 Y_RNA.712-201ENST00000517011 92 ntBASIC0.35□□□□□ -2.35
CCDC28BQ9BUN5 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.35□□□□□ -2.35
CCDC28BQ9BUN5 RNU6-363P-201ENST00000362895 105 ntBASIC0.34□□□□□ -2.36
CCDC28BQ9BUN5 SNORA36.1-201ENST00000363424 132 ntBASIC0.34□□□□□ -2.36
CCDC28BQ9BUN5 RNU6-1099P-201ENST00000363533 107 ntBASIC0.34□□□□□ -2.36
CCDC28BQ9BUN5 RNA5SP245-201ENST00000364239 121 ntBASIC0.34□□□□□ -2.36
CCDC28BQ9BUN5 RNU4-67P-201ENST00000364569 141 ntBASIC0.34□□□□□ -2.36
CCDC28BQ9BUN5 MIR548M-201ENST00000408260 86 ntBASIC0.34□□□□□ -2.36
CCDC28BQ9BUN5 AC098934.3-201ENST00000430450 190 ntBASIC0.34□□□□□ -2.36
CCDC28BQ9BUN5 RNU6-863P-201ENST00000515989 104 ntBASIC0.34□□□□□ -2.36
CCDC28BQ9BUN5 RNU6-1018P-201ENST00000516577 106 ntBASIC0.34□□□□□ -2.36
CCDC28BQ9BUN5 RNU6-229P-201ENST00000516614 102 ntBASIC0.34□□□□□ -2.36
CCDC28BQ9BUN5 RNA5SP268-201ENST00000516828 124 ntBASIC0.34□□□□□ -2.36
CCDC28BQ9BUN5 MIR6513-201ENST00000621188 64 ntBASIC0.34□□□□□ -2.36
CCDC28BQ9BUN5 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.34□□□□□ -2.36
CCDC28BQ9BUN5 MIRLET7D-201ENST00000362263 87 ntBASIC0.33□□□□□ -2.36
CCDC28BQ9BUN5 RNU6-774P-201ENST00000363238 107 ntBASIC0.33□□□□□ -2.36
CCDC28BQ9BUN5 SNORA63.5-201ENST00000363548 123 ntBASIC0.33□□□□□ -2.36
CCDC28BQ9BUN5 RNU6-571P-201ENST00000384128 107 ntBASIC0.33□□□□□ -2.36
CCDC28BQ9BUN5 Y_RNA.507-201ENST00000384500 99 ntBASIC0.33□□□□□ -2.36
CCDC28BQ9BUN5 MIR34C-201ENST00000384831 77 ntBASIC0.33□□□□□ -2.36
CCDC28BQ9BUN5 MIR519A1-201ENST00000385257 85 ntBASIC0.33□□□□□ -2.36
CCDC28BQ9BUN5 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.33□□□□□ -2.36
CCDC28BQ9BUN5 RPL39P34-201ENST00000477141 156 ntBASIC0.33□□□□□ -2.36
CCDC28BQ9BUN5 MIR4679-2-201ENST00000578358 77 ntBASIC0.33□□□□□ -2.36
CCDC28BQ9BUN5 MIR1255B1-201ENST00000636325 63 ntBASIC0.33□□□□□ -2.36
CCDC28BQ9BUN5 MIR3914-2-201ENST00000637339 95 ntBASIC0.33□□□□□ -2.36
CCDC28BQ9BUN5 AC091304.10-201ENST00000641554 121 ntBASIC0.33□□□□□ -2.36
CCDC28BQ9BUN5 AC090625.1-201ENST00000357130 210 ntBASIC0.32□□□□□ -2.36
CCDC28BQ9BUN5 RNU6-1313P-201ENST00000362622 102 ntBASIC0.32□□□□□ -2.36
CCDC28BQ9BUN5 Y_RNA.218-201ENST00000364218 104 ntBASIC0.32□□□□□ -2.36
CCDC28BQ9BUN5 Y_RNA.344-201ENST00000365381 112 ntBASIC0.32□□□□□ -2.36
CCDC28BQ9BUN5 MIR216A-201ENST00000385063 110 ntBASIC0.32□□□□□ -2.36
CCDC28BQ9BUN5 MIR1912-201ENST00000410389 80 ntBASIC0.32□□□□□ -2.36
CCDC28BQ9BUN5 Y_RNA.630-201ENST00000411370 108 ntBASIC0.32□□□□□ -2.36
CCDC28BQ9BUN5 SNRPGP12-201ENST00000449481 213 ntBASIC0.32□□□□□ -2.36
CCDC28BQ9BUN5 AC097635.1-201ENST00000450678 155 ntBASIC0.32□□□□□ -2.36
CCDC28BQ9BUN5 SNORA68.3-201ENST00000515906 83 ntBASIC0.32□□□□□ -2.36
CCDC28BQ9BUN5 RNU6-659P-201ENST00000516454 104 ntBASIC0.32□□□□□ -2.36
CCDC28BQ9BUN5 AC244669.1-204ENST00000621564 178 ntBASIC0.32□□□□□ -2.36
CCDC28BQ9BUN5 AC243829.3-201ENST00000622177 108 ntBASIC0.32□□□□□ -2.36
CCDC28BQ9BUN5 U6.95-201ENST00000636931 70 ntBASIC0.32□□□□□ -2.36
CCDC28BQ9BUN5 Y_RNA.71-201ENST00000362892 104 ntBASIC0.31□□□□□ -2.36
CCDC28BQ9BUN5 Y_RNA.85-201ENST00000363014 111 ntBASIC0.31□□□□□ -2.36
CCDC28BQ9BUN5 RNU6-409P-201ENST00000384114 104 ntBASIC0.31□□□□□ -2.36
CCDC28BQ9BUN5 RNU6-187P-201ENST00000384139 106 ntBASIC0.31□□□□□ -2.36
CCDC28BQ9BUN5 MIR489-201ENST00000384923 84 ntBASIC0.31□□□□□ -2.36
CCDC28BQ9BUN5 RNU7-107P-201ENST00000459121 61 ntBASIC0.31□□□□□ -2.36
CCDC28BQ9BUN5 SNORA25.18-201ENST00000607153 114 ntBASIC0.31□□□□□ -2.36
CCDC28BQ9BUN5 RNU6-170P-201ENST00000362832 104 ntBASIC0.3□□□□□ -2.36
CCDC28BQ9BUN5 SNORD44.1-201ENST00000363202 61 ntBASIC0.3□□□□□ -2.36
CCDC28BQ9BUN5 Y_RNA.362-201ENST00000365518 110 ntBASIC0.3□□□□□ -2.36
CCDC28BQ9BUN5 SNORD116-14-201ENST00000383894 92 ntBASIC0.3□□□□□ -2.36
CCDC28BQ9BUN5 SNORD116-17-201ENST00000383929 92 ntBASIC0.3□□□□□ -2.36
CCDC28BQ9BUN5 SNORD116-15-201ENST00000384445 92 ntBASIC0.3□□□□□ -2.36
CCDC28BQ9BUN5 SNORD116-19-201ENST00000384729 92 ntBASIC0.3□□□□□ -2.36
CCDC28BQ9BUN5 RNU2-59P-201ENST00000410482 191 ntBASIC0.3□□□□□ -2.36
CCDC28BQ9BUN5 BX276092.1-201ENST00000427368 251 ntBASIC0.3□□□□□ -2.36
CCDC28BQ9BUN5 SUMO1P3-201ENST00000439961 304 ntBASIC0.3□□□□□ -2.36
CCDC28BQ9BUN5 TRAJ51-201ENST00000504127 63 ntBASIC0.3□□□□□ -2.36
CCDC28BQ9BUN5 RNA5SP227-201ENST00000516184 113 ntBASIC0.3□□□□□ -2.36
CCDC28BQ9BUN5 AL162726.3-218ENST00000636401 95 ntBASIC0.3□□□□□ -2.36
CCDC28BQ9BUN5 AL512310.12-203ENST00000640543 90 ntBASIC0.3□□□□□ -2.36
CCDC28BQ9BUN5 SNORD115-24-201ENST00000363528 82 ntBASIC0.29□□□□□ -2.36
CCDC28BQ9BUN5 Y_RNA.309-201ENST00000365046 111 ntBASIC0.29□□□□□ -2.36
CCDC28BQ9BUN5 SNORA7.5-201ENST00000410672 110 ntBASIC0.29□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 171.8 ms