Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 RNU6-219P-201ENST00000364728 107 ntBASIC1.52□□□□□ -2.17
LRFN3Q9BTN0 MIR548G-201ENST00000408442 89 ntBASIC1.52□□□□□ -2.17
LRFN3Q9BTN0 RNU6-447P-201ENST00000410293 104 ntBASIC1.52□□□□□ -2.17
LRFN3Q9BTN0 RNU6-1118P-201ENST00000410382 104 ntBASIC1.52□□□□□ -2.17
LRFN3Q9BTN0 RNU6-1076P-201ENST00000410397 104 ntBASIC1.52□□□□□ -2.17
LRFN3Q9BTN0 RNU6-355P-201ENST00000410427 104 ntBASIC1.52□□□□□ -2.17
LRFN3Q9BTN0 RNU6-791P-201ENST00000410467 104 ntBASIC1.52□□□□□ -2.17
LRFN3Q9BTN0 RNU6-705P-201ENST00000410601 104 ntBASIC1.52□□□□□ -2.17
LRFN3Q9BTN0 RNU6-1100P-201ENST00000410691 104 ntBASIC1.52□□□□□ -2.17
LRFN3Q9BTN0 RNU6-860P-201ENST00000410860 104 ntBASIC1.52□□□□□ -2.17
LRFN3Q9BTN0 RNU6-1217P-201ENST00000411276 104 ntBASIC1.52□□□□□ -2.17
LRFN3Q9BTN0 RNU6-785P-201ENST00000411324 104 ntBASIC1.52□□□□□ -2.17
LRFN3Q9BTN0 AC244023.1-201ENST00000426884 112 ntBASIC1.52□□□□□ -2.17
LRFN3Q9BTN0 RNU7-48P-201ENST00000458875 63 ntBASIC1.52□□□□□ -2.17
LRFN3Q9BTN0 AC141846.1-201ENST00000568348 142 ntBASIC1.52□□□□□ -2.17
LRFN3Q9BTN0 AC242498.1-201ENST00000604134 111 ntBASIC1.52□□□□□ -2.17
LRFN3Q9BTN0 PRELID3BP2-201ENST00000605362 201 ntBASIC1.52□□□□□ -2.17
LRFN3Q9BTN0 U6.90-201ENST00000614007 104 ntBASIC1.52□□□□□ -2.17
LRFN3Q9BTN0 U6.70-201ENST00000620287 104 ntBASIC1.52□□□□□ -2.17
LRFN3Q9BTN0 RNU6-228P-201ENST00000362700 106 ntBASIC1.51□□□□□ -2.17
LRFN3Q9BTN0 Y_RNA.98-201ENST00000363109 102 ntBASIC1.51□□□□□ -2.17
LRFN3Q9BTN0 RNU6-1244P-201ENST00000363614 108 ntBASIC1.51□□□□□ -2.17
LRFN3Q9BTN0 RNU6-497P-201ENST00000365316 104 ntBASIC1.51□□□□□ -2.17
LRFN3Q9BTN0 Y_RNA.567-201ENST00000384736 106 ntBASIC1.51□□□□□ -2.17
LRFN3Q9BTN0 MIR193B-201ENST00000384907 83 ntBASIC1.51□□□□□ -2.17
LRFN3Q9BTN0 MIR1302-7-201ENST00000408841 72 ntBASIC1.51□□□□□ -2.17
LRFN3Q9BTN0 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.51□□□□□ -2.17
LRFN3Q9BTN0 MIR1273G-201ENST00000577677 100 ntBASIC1.51□□□□□ -2.17
LRFN3Q9BTN0 MIR4668-201ENST00000582284 70 ntBASIC1.51□□□□□ -2.17
LRFN3Q9BTN0 RNU6-90P-201ENST00000606352 106 ntBASIC1.51□□□□□ -2.17
LRFN3Q9BTN0 RNU6-1276P-201ENST00000365372 104 ntBASIC1.5□□□□□ -2.17
LRFN3Q9BTN0 RNU6-979P-201ENST00000383896 107 ntBASIC1.5□□□□□ -2.17
LRFN3Q9BTN0 RNU6-1124P-201ENST00000384169 107 ntBASIC1.5□□□□□ -2.17
LRFN3Q9BTN0 RNU6-242P-201ENST00000384359 107 ntBASIC1.5□□□□□ -2.17
LRFN3Q9BTN0 RNA5SP237-201ENST00000410414 113 ntBASIC1.5□□□□□ -2.17
LRFN3Q9BTN0 Y_RNA.620-201ENST00000411009 88 ntBASIC1.5□□□□□ -2.17
LRFN3Q9BTN0 SPINT5P-201ENST00000448174 155 ntBASIC1.5□□□□□ -2.17
LRFN3Q9BTN0 AL662814.1-201ENST00000617364 121 ntBASIC1.5□□□□□ -2.17
LRFN3Q9BTN0 RNA5SP264-201ENST00000363115 107 ntBASIC1.49□□□□□ -2.17
LRFN3Q9BTN0 RNU6-997P-201ENST00000384725 107 ntBASIC1.49□□□□□ -2.17
LRFN3Q9BTN0 RPS29P23-201ENST00000458635 123 ntBASIC1.49□□□□□ -2.17
LRFN3Q9BTN0 RNU1-98P-201ENST00000458992 160 ntBASIC1.49□□□□□ -2.17
LRFN3Q9BTN0 snoU13.2-201ENST00000459201 104 ntBASIC1.49□□□□□ -2.17
LRFN3Q9BTN0 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.49□□□□□ -2.17
LRFN3Q9BTN0 SNORA31.2-201ENST00000516019 134 ntBASIC1.49□□□□□ -2.17
LRFN3Q9BTN0 MIR5000-201ENST00000577717 103 ntBASIC1.49□□□□□ -2.17
LRFN3Q9BTN0 MIR5588-201ENST00000581890 63 ntBASIC1.49□□□□□ -2.17
LRFN3Q9BTN0 AC012676.2-201ENST00000619258 186 ntBASIC1.49□□□□□ -2.17
LRFN3Q9BTN0 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.48□□□□□ -2.17
LRFN3Q9BTN0 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.48□□□□□ -2.17
LRFN3Q9BTN0 Y_RNA.173-201ENST00000363776 113 ntBASIC1.48□□□□□ -2.17
LRFN3Q9BTN0 RNU6-787P-201ENST00000384032 107 ntBASIC1.48□□□□□ -2.17
LRFN3Q9BTN0 SNORD38.2-201ENST00000384470 69 ntBASIC1.48□□□□□ -2.17
LRFN3Q9BTN0 MIR222-201ENST00000384992 110 ntBASIC1.48□□□□□ -2.17
LRFN3Q9BTN0 AP001362.1-201ENST00000625165 124 ntBASIC1.48□□□□□ -2.17
LRFN3Q9BTN0 MIR3202-2-201ENST00000635980 79 ntBASIC1.48□□□□□ -2.17
LRFN3Q9BTN0 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.48□□□□□ -2.17
LRFN3Q9BTN0 MIR103A2-201ENST00000362154 78 ntBASIC1.47□□□□□ -2.17
LRFN3Q9BTN0 SNORA25.3-201ENST00000363205 127 ntBASIC1.47□□□□□ -2.17
LRFN3Q9BTN0 RNU6-949P-201ENST00000384040 107 ntBASIC1.47□□□□□ -2.17
LRFN3Q9BTN0 MIR588-201ENST00000384900 83 ntBASIC1.47□□□□□ -2.17
LRFN3Q9BTN0 MIR1255A-201ENST00000408338 113 ntBASIC1.47□□□□□ -2.17
LRFN3Q9BTN0 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.47□□□□□ -2.17
LRFN3Q9BTN0 Y_RNA.609-201ENST00000410669 89 ntBASIC1.47□□□□□ -2.17
LRFN3Q9BTN0 RNA5SP225-201ENST00000410874 135 ntBASIC1.47□□□□□ -2.17
LRFN3Q9BTN0 snoU13.25-201ENST00000458945 104 ntBASIC1.47□□□□□ -2.17
LRFN3Q9BTN0 AC048334.1-201ENST00000477975 159 ntBASIC1.47□□□□□ -2.17
LRFN3Q9BTN0 SNORA70.22-201ENST00000517160 124 ntBASIC1.47□□□□□ -2.17
LRFN3Q9BTN0 MTND5P40-201ENST00000559945 246 ntBASIC1.47□□□□□ -2.17
LRFN3Q9BTN0 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
LRFN3Q9BTN0 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.47□□□□□ -2.17
LRFN3Q9BTN0 RNU6-396P-201ENST00000365369 105 ntBASIC1.46□□□□□ -2.18
LRFN3Q9BTN0 SNORD26-201ENST00000384147 75 ntBASIC1.46□□□□□ -2.18
LRFN3Q9BTN0 SNORA80D-201ENST00000384488 135 ntBASIC1.46□□□□□ -2.18
LRFN3Q9BTN0 MIR563-201ENST00000385080 79 ntBASIC1.46□□□□□ -2.18
LRFN3Q9BTN0 SNORD12-201ENST00000391002 90 ntBASIC1.46□□□□□ -2.18
LRFN3Q9BTN0 RNU7-171P-201ENST00000459581 62 ntBASIC1.46□□□□□ -2.18
LRFN3Q9BTN0 MIR2115-201ENST00000516657 100 ntBASIC1.46□□□□□ -2.18
LRFN3Q9BTN0 AC133485.1-201ENST00000567176 124 ntBASIC1.46□□□□□ -2.18
LRFN3Q9BTN0 AC020891.4-201ENST00000605745 93 ntBASIC1.46□□□□□ -2.18
LRFN3Q9BTN0 MIR6740-201ENST00000618268 113 ntBASIC1.46□□□□□ -2.18
LRFN3Q9BTN0 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.45□□□□□ -2.18
LRFN3Q9BTN0 HSBP1P2-201ENST00000299671 229 ntBASIC1.45□□□□□ -2.18
LRFN3Q9BTN0 RNY1P2-201ENST00000364820 117 ntBASIC1.45□□□□□ -2.18
LRFN3Q9BTN0 SNORA2B-201ENST00000384583 137 ntBASIC1.45□□□□□ -2.18
LRFN3Q9BTN0 RNU6-613P-201ENST00000410412 108 ntBASIC1.45□□□□□ -2.18
LRFN3Q9BTN0 AL591704.2-201ENST00000421658 181 ntBASIC1.45□□□□□ -2.18
LRFN3Q9BTN0 AP003716.2-201ENST00000528260 108 ntBASIC1.45□□□□□ -2.18
LRFN3Q9BTN0 AL513043.2-201ENST00000573941 143 ntBASIC1.45□□□□□ -2.18
LRFN3Q9BTN0 RNU6-509P-201ENST00000363519 107 ntBASIC1.44□□□□□ -2.18
LRFN3Q9BTN0 MIR181B2-201ENST00000385004 89 ntBASIC1.44□□□□□ -2.18
LRFN3Q9BTN0 Y_RNA.611-201ENST00000410682 108 ntBASIC1.44□□□□□ -2.18
LRFN3Q9BTN0 MIR4666B-201ENST00000578142 81 ntBASIC1.44□□□□□ -2.18
LRFN3Q9BTN0 AL590095.2-201ENST00000604136 117 ntBASIC1.44□□□□□ -2.18
LRFN3Q9BTN0 AC025521.1-201ENST00000621624 286 ntBASIC1.44□□□□□ -2.18
LRFN3Q9BTN0 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.43□□□□□ -2.18
LRFN3Q9BTN0 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
LRFN3Q9BTN0 MIR30D-201ENST00000362283 70 ntBASIC1.43□□□□□ -2.18
LRFN3Q9BTN0 RNU6-633P-201ENST00000362612 103 ntBASIC1.43□□□□□ -2.18
LRFN3Q9BTN0 RNA5SP257-201ENST00000363023 116 ntBASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 187.3 ms