Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 RNU6-469P-201ENST00000516253 101 ntBASIC0.78□□□□□ -2.28
PAAF1Q9BRP4 MTND5P34-201ENST00000568888 325 ntBASIC0.78□□□□□ -2.28
PAAF1Q9BRP4 AL512310.12-203ENST00000640543 90 ntBASIC0.78□□□□□ -2.28
PAAF1Q9BRP4 RNU6-409P-201ENST00000384114 104 ntBASIC0.77□□□□□ -2.29
PAAF1Q9BRP4 RNU6-22P-201ENST00000384355 107 ntBASIC0.77□□□□□ -2.29
PAAF1Q9BRP4 RNU6-110P-201ENST00000384508 104 ntBASIC0.77□□□□□ -2.29
PAAF1Q9BRP4 RNU6-429P-201ENST00000384582 108 ntBASIC0.77□□□□□ -2.29
PAAF1Q9BRP4 RNU6-535P-201ENST00000384722 107 ntBASIC0.77□□□□□ -2.29
PAAF1Q9BRP4 SNORD100-201ENST00000408573 76 ntBASIC0.77□□□□□ -2.29
PAAF1Q9BRP4 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.77□□□□□ -2.29
PAAF1Q9BRP4 AC138907.6-201ENST00000568401 126 ntBASIC0.77□□□□□ -2.29
PAAF1Q9BRP4 MIR6866-201ENST00000638146 69 ntBASIC0.77□□□□□ -2.29
PAAF1Q9BRP4 SNORA63.5-201ENST00000363548 123 ntBASIC0.76□□□□□ -2.29
PAAF1Q9BRP4 RNU4-45P-201ENST00000365469 141 ntBASIC0.76□□□□□ -2.29
PAAF1Q9BRP4 SNORD38.2-201ENST00000384470 69 ntBASIC0.76□□□□□ -2.29
PAAF1Q9BRP4 Y_RNA.536-201ENST00000384621 113 ntBASIC0.76□□□□□ -2.29
PAAF1Q9BRP4 RNU6-816P-201ENST00000390914 107 ntBASIC0.76□□□□□ -2.29
PAAF1Q9BRP4 RNU6-1307P-201ENST00000391012 103 ntBASIC0.76□□□□□ -2.29
PAAF1Q9BRP4 RNU6-1268P-201ENST00000391214 107 ntBASIC0.76□□□□□ -2.29
PAAF1Q9BRP4 RNU6-1239P-201ENST00000391310 107 ntBASIC0.76□□□□□ -2.29
PAAF1Q9BRP4 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.76□□□□□ -2.29
PAAF1Q9BRP4 AL606753.1-201ENST00000427435 87 ntBASIC0.76□□□□□ -2.29
PAAF1Q9BRP4 RNU6-313P-201ENST00000516317 112 ntBASIC0.76□□□□□ -2.29
PAAF1Q9BRP4 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.76□□□□□ -2.29
PAAF1Q9BRP4 MIR376B-201ENST00000614515 100 ntBASIC0.76□□□□□ -2.29
PAAF1Q9BRP4 RNU6-363P-201ENST00000362895 105 ntBASIC0.75□□□□□ -2.29
PAAF1Q9BRP4 Y_RNA.174-201ENST00000363781 105 ntBASIC0.75□□□□□ -2.29
PAAF1Q9BRP4 RNU6-1154P-201ENST00000391001 104 ntBASIC0.75□□□□□ -2.29
PAAF1Q9BRP4 MIR1912-201ENST00000410389 80 ntBASIC0.75□□□□□ -2.29
PAAF1Q9BRP4 RPL39P34-201ENST00000477141 156 ntBASIC0.75□□□□□ -2.29
PAAF1Q9BRP4 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.75□□□□□ -2.29
PAAF1Q9BRP4 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
PAAF1Q9BRP4 MIR18A-201ENST00000362310 71 ntBASIC0.74□□□□□ -2.29
PAAF1Q9BRP4 RNU6-733P-201ENST00000410759 104 ntBASIC0.74□□□□□ -2.29
PAAF1Q9BRP4 AL162726.3-218ENST00000636401 95 ntBASIC0.74□□□□□ -2.29
PAAF1Q9BRP4 Y_RNA.309-201ENST00000365046 111 ntBASIC0.73□□□□□ -2.29
PAAF1Q9BRP4 Y_RNA.360-201ENST00000365512 102 ntBASIC0.73□□□□□ -2.29
PAAF1Q9BRP4 Y_RNA.466-201ENST00000384294 113 ntBASIC0.73□□□□□ -2.29
PAAF1Q9BRP4 RNU6-291P-201ENST00000384720 107 ntBASIC0.73□□□□□ -2.29
PAAF1Q9BRP4 MIR34C-201ENST00000384831 77 ntBASIC0.73□□□□□ -2.29
PAAF1Q9BRP4 RNU6-1168P-201ENST00000390831 104 ntBASIC0.73□□□□□ -2.29
PAAF1Q9BRP4 RNU6-679P-201ENST00000391003 106 ntBASIC0.73□□□□□ -2.29
PAAF1Q9BRP4 RNA5SP480-201ENST00000516840 109 ntBASIC0.73□□□□□ -2.29
PAAF1Q9BRP4 MTND5P40-201ENST00000559945 246 ntBASIC0.73□□□□□ -2.29
PAAF1Q9BRP4 Y_RNA.353-201ENST00000365440 108 ntBASIC0.72□□□□□ -2.29
PAAF1Q9BRP4 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.72□□□□□ -2.29
PAAF1Q9BRP4 MIR4679-2-201ENST00000578358 77 ntBASIC0.72□□□□□ -2.29
PAAF1Q9BRP4 MIR548H5-201ENST00000580314 60 ntBASIC0.72□□□□□ -2.29
PAAF1Q9BRP4 RNU7-10P-201ENST00000607194 63 ntBASIC0.72□□□□□ -2.29
PAAF1Q9BRP4 Y_RNA.85-201ENST00000363014 111 ntBASIC0.71□□□□□ -2.3
PAAF1Q9BRP4 SNORD116-21-201ENST00000384507 92 ntBASIC0.71□□□□□ -2.3
PAAF1Q9BRP4 Y_RNA.563-201ENST00000384707 108 ntBASIC0.71□□□□□ -2.3
PAAF1Q9BRP4 MIR644A-201ENST00000385262 94 ntBASIC0.71□□□□□ -2.3
PAAF1Q9BRP4 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.71□□□□□ -2.3
PAAF1Q9BRP4 BX276092.1-201ENST00000427368 251 ntBASIC0.71□□□□□ -2.3
PAAF1Q9BRP4 RNU6-479P-201ENST00000516348 105 ntBASIC0.71□□□□□ -2.3
PAAF1Q9BRP4 SNORA31.14-201ENST00000516728 116 ntBASIC0.71□□□□□ -2.3
PAAF1Q9BRP4 MIR3678-201ENST00000578455 94 ntBASIC0.71□□□□□ -2.3
PAAF1Q9BRP4 MIR4653-201ENST00000585107 83 ntBASIC0.71□□□□□ -2.3
PAAF1Q9BRP4 AL035470.1-201ENST00000622571 220 ntBASIC0.71□□□□□ -2.3
PAAF1Q9BRP4 Y_RNA.32-201ENST00000362589 110 ntBASIC0.7□□□□□ -2.3
PAAF1Q9BRP4 Y_RNA.56-201ENST00000362798 112 ntBASIC0.7□□□□□ -2.3
PAAF1Q9BRP4 RNA5SP205-201ENST00000364653 136 ntBASIC0.7□□□□□ -2.3
PAAF1Q9BRP4 RNU6-880P-201ENST00000384526 107 ntBASIC0.7□□□□□ -2.3
PAAF1Q9BRP4 Y_RNA.549-201ENST00000384657 102 ntBASIC0.7□□□□□ -2.3
PAAF1Q9BRP4 SNORA19-201ENST00000384737 128 ntBASIC0.7□□□□□ -2.3
PAAF1Q9BRP4 MIR635-201ENST00000384830 98 ntBASIC0.7□□□□□ -2.3
PAAF1Q9BRP4 RNU2-51P-201ENST00000410708 197 ntBASIC0.7□□□□□ -2.3
PAAF1Q9BRP4 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.7□□□□□ -2.3
PAAF1Q9BRP4 RNU6-1018P-201ENST00000516577 106 ntBASIC0.7□□□□□ -2.3
PAAF1Q9BRP4 AL590095.2-201ENST00000604136 117 ntBASIC0.7□□□□□ -2.3
PAAF1Q9BRP4 MIR6513-201ENST00000621188 64 ntBASIC0.7□□□□□ -2.3
PAAF1Q9BRP4 uc_338.16-201ENST00000621804 95 ntBASIC0.7□□□□□ -2.3
PAAF1Q9BRP4 Y_RNA.49-201ENST00000362714 112 ntBASIC0.69□□□□□ -2.3
PAAF1Q9BRP4 RNA5SP499-201ENST00000363982 119 ntBASIC0.69□□□□□ -2.3
PAAF1Q9BRP4 MIR140-201ENST00000385282 100 ntBASIC0.69□□□□□ -2.3
PAAF1Q9BRP4 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.69□□□□□ -2.3
PAAF1Q9BRP4 AL606490.4-201ENST00000423117 127 ntBASIC0.69□□□□□ -2.3
PAAF1Q9BRP4 RNU6-412P-201ENST00000516434 106 ntBASIC0.69□□□□□ -2.3
PAAF1Q9BRP4 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.69□□□□□ -2.3
PAAF1Q9BRP4 RNU6-1229P-201ENST00000364295 107 ntBASIC0.68□□□□□ -2.3
PAAF1Q9BRP4 MIR146A-201ENST00000385201 99 ntBASIC0.68□□□□□ -2.3
PAAF1Q9BRP4 RNU6-1064P-201ENST00000410626 104 ntBASIC0.68□□□□□ -2.3
PAAF1Q9BRP4 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.68□□□□□ -2.3
PAAF1Q9BRP4 RNU6-135P-201ENST00000516769 101 ntBASIC0.68□□□□□ -2.3
PAAF1Q9BRP4 AC068339.1-201ENST00000526965 141 ntBASIC0.68□□□□□ -2.3
PAAF1Q9BRP4 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.68□□□□□ -2.3
PAAF1Q9BRP4 RNU6-1313P-201ENST00000362622 102 ntBASIC0.67□□□□□ -2.3
PAAF1Q9BRP4 RNY1P8-201ENST00000383970 114 ntBASIC0.67□□□□□ -2.3
PAAF1Q9BRP4 RNU6-1056P-201ENST00000383996 107 ntBASIC0.67□□□□□ -2.3
PAAF1Q9BRP4 RNU6-476P-201ENST00000384726 107 ntBASIC0.67□□□□□ -2.3
PAAF1Q9BRP4 MIR7-2-201ENST00000384970 110 ntBASIC0.67□□□□□ -2.3
PAAF1Q9BRP4 MIR936-201ENST00000401264 98 ntBASIC0.67□□□□□ -2.3
PAAF1Q9BRP4 SPINT5P-201ENST00000448174 155 ntBASIC0.67□□□□□ -2.3
PAAF1Q9BRP4 AC138869.1-201ENST00000568623 124 ntBASIC0.67□□□□□ -2.3
PAAF1Q9BRP4 AC096720.1-201ENST00000604441 183 ntBASIC0.67□□□□□ -2.3
PAAF1Q9BRP4 Y_RNA.35-201ENST00000362601 101 ntBASIC0.66□□□□□ -2.3
PAAF1Q9BRP4 SNORD114-26-201ENST00000363543 72 ntBASIC0.66□□□□□ -2.3
PAAF1Q9BRP4 U8.6-201ENST00000364939 135 ntBASIC0.66□□□□□ -2.3
PAAF1Q9BRP4 RNU6-1144P-201ENST00000384247 104 ntBASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 180.3 ms