Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RNU7-107P-201ENST00000459121 61 ntBASIC0.42□□□□□ -2.34
NKX3-1Q99801 RN7SKP12-201ENST00000516275 143 ntBASIC0.42□□□□□ -2.34
NKX3-1Q99801 MIR376B-201ENST00000614515 100 ntBASIC0.42□□□□□ -2.34
NKX3-1Q99801 MIR101-2-201ENST00000362195 79 ntBASIC0.41□□□□□ -2.34
NKX3-1Q99801 Y_RNA.98-201ENST00000363109 102 ntBASIC0.41□□□□□ -2.34
NKX3-1Q99801 Y_RNA.174-201ENST00000363781 105 ntBASIC0.41□□□□□ -2.34
NKX3-1Q99801 SNORD58C-201ENST00000365223 64 ntBASIC0.41□□□□□ -2.34
NKX3-1Q99801 SNORA8.2-201ENST00000384372 139 ntBASIC0.41□□□□□ -2.34
NKX3-1Q99801 RNU6-429P-201ENST00000384582 108 ntBASIC0.41□□□□□ -2.34
NKX3-1Q99801 AC114737.2-201ENST00000421583 173 ntBASIC0.41□□□□□ -2.34
NKX3-1Q99801 SUMO1P3-201ENST00000439961 304 ntBASIC0.41□□□□□ -2.34
NKX3-1Q99801 RNU6-469P-201ENST00000516253 101 ntBASIC0.41□□□□□ -2.34
NKX3-1Q99801 RNU6-521P-201ENST00000516663 105 ntBASIC0.41□□□□□ -2.34
NKX3-1Q99801 MIR3163-201ENST00000581592 73 ntBASIC0.41□□□□□ -2.34
NKX3-1Q99801 AC025166.1-201ENST00000612411 163 ntBASIC0.41□□□□□ -2.34
NKX3-1Q99801 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.41□□□□□ -2.34
NKX3-1Q99801 SNORD115-19-201ENST00000363098 82 ntBASIC0.4□□□□□ -2.35
NKX3-1Q99801 SNORD115-18-201ENST00000363293 82 ntBASIC0.4□□□□□ -2.35
NKX3-1Q99801 Y_RNA.127-201ENST00000363386 109 ntBASIC0.4□□□□□ -2.35
NKX3-1Q99801 SNORD114-23-201ENST00000363536 72 ntBASIC0.4□□□□□ -2.35
NKX3-1Q99801 SNORD115-17-201ENST00000364612 82 ntBASIC0.4□□□□□ -2.35
NKX3-1Q99801 RNU6-187P-201ENST00000384139 106 ntBASIC0.4□□□□□ -2.35
NKX3-1Q99801 MIR34C-201ENST00000384831 77 ntBASIC0.4□□□□□ -2.35
NKX3-1Q99801 BX276092.1-201ENST00000427368 251 ntBASIC0.4□□□□□ -2.35
NKX3-1Q99801 MTND5P18-201ENST00000445624 1801 ntBASIC0.4□□□□□ -2.35
NKX3-1Q99801 Y_RNA.56-201ENST00000362798 112 ntBASIC0.39□□□□□ -2.35
NKX3-1Q99801 Y_RNA.213-201ENST00000364178 111 ntBASIC0.39□□□□□ -2.35
NKX3-1Q99801 RNU6-1062P-201ENST00000383908 107 ntBASIC0.39□□□□□ -2.35
NKX3-1Q99801 SNORD28-201ENST00000384706 75 ntBASIC0.39□□□□□ -2.35
NKX3-1Q99801 MIR518A1-201ENST00000385068 85 ntBASIC0.39□□□□□ -2.35
NKX3-1Q99801 AC092628.1-201ENST00000436250 252 ntBASIC0.39□□□□□ -2.35
NKX3-1Q99801 MIR103A1-201ENST00000362165 78 ntBASIC0.38□□□□□ -2.35
NKX3-1Q99801 Y_RNA.49-201ENST00000362714 112 ntBASIC0.38□□□□□ -2.35
NKX3-1Q99801 SNORD118-201ENST00000363593 134 ntBASIC0.38□□□□□ -2.35
NKX3-1Q99801 RNU6-865P-201ENST00000364772 107 ntBASIC0.38□□□□□ -2.35
NKX3-1Q99801 Y_RNA.344-201ENST00000365381 112 ntBASIC0.38□□□□□ -2.35
NKX3-1Q99801 MIR548D2-201ENST00000384955 97 ntBASIC0.38□□□□□ -2.35
NKX3-1Q99801 MIR759-201ENST00000390224 91 ntBASIC0.38□□□□□ -2.35
NKX3-1Q99801 SNORA40.8-201ENST00000411034 126 ntBASIC0.38□□□□□ -2.35
NKX3-1Q99801 RNU6-772P-201ENST00000516042 105 ntBASIC0.38□□□□□ -2.35
NKX3-1Q99801 RNA5SP47-201ENST00000517230 109 ntBASIC0.38□□□□□ -2.35
NKX3-1Q99801 AC244669.1-204ENST00000621564 178 ntBASIC0.38□□□□□ -2.35
NKX3-1Q99801 AP001362.1-201ENST00000625165 124 ntBASIC0.38□□□□□ -2.35
NKX3-1Q99801 MIRLET7D-201ENST00000362263 87 ntBASIC0.37□□□□□ -2.35
NKX3-1Q99801 SNORD44.1-201ENST00000363202 61 ntBASIC0.37□□□□□ -2.35
NKX3-1Q99801 MIR7-2-201ENST00000384970 110 ntBASIC0.37□□□□□ -2.35
NKX3-1Q99801 SNORA7.5-201ENST00000410672 110 ntBASIC0.37□□□□□ -2.35
NKX3-1Q99801 TRAJ51-201ENST00000504127 63 ntBASIC0.37□□□□□ -2.35
NKX3-1Q99801 RNA5SP268-201ENST00000516828 124 ntBASIC0.37□□□□□ -2.35
NKX3-1Q99801 Y_RNA.703-201ENST00000516846 111 ntBASIC0.37□□□□□ -2.35
NKX3-1Q99801 MIR4711-201ENST00000578274 70 ntBASIC0.37□□□□□ -2.35
NKX3-1Q99801 SNORD114-26-201ENST00000363543 72 ntBASIC0.36□□□□□ -2.35
NKX3-1Q99801 Y_RNA.205-201ENST00000364128 113 ntBASIC0.36□□□□□ -2.35
NKX3-1Q99801 Y_RNA.360-201ENST00000365512 102 ntBASIC0.36□□□□□ -2.35
NKX3-1Q99801 MIR193B-201ENST00000384907 83 ntBASIC0.36□□□□□ -2.35
NKX3-1Q99801 AL353813.1-201ENST00000440700 253 ntBASIC0.36□□□□□ -2.35
NKX3-1Q99801 MIR7107-201ENST00000611489 80 ntBASIC0.36□□□□□ -2.35
NKX3-1Q99801 AC243829.6-201ENST00000612652 106 ntBASIC0.36□□□□□ -2.35
NKX3-1Q99801 SNORD115-24-201ENST00000363528 82 ntBASIC0.35□□□□□ -2.35
NKX3-1Q99801 Y_RNA.218-201ENST00000364218 104 ntBASIC0.35□□□□□ -2.35
NKX3-1Q99801 RNU6-746P-201ENST00000384112 109 ntBASIC0.35□□□□□ -2.35
NKX3-1Q99801 SCARNA16.5-201ENST00000517114 183 ntBASIC0.35□□□□□ -2.35
NKX3-1Q99801 MIR4639-201ENST00000584938 69 ntBASIC0.35□□□□□ -2.35
NKX3-1Q99801 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.35□□□□□ -2.35
NKX3-1Q99801 MIR6828-201ENST00000636181 60 ntBASIC0.35□□□□□ -2.35
NKX3-1Q99801 AL157777.2-201ENST00000258070 137 ntBASIC0.34□□□□□ -2.36
NKX3-1Q99801 AC090625.1-201ENST00000357130 210 ntBASIC0.34□□□□□ -2.36
NKX3-1Q99801 RNU6-1229P-201ENST00000364295 107 ntBASIC0.34□□□□□ -2.36
NKX3-1Q99801 MIR539-201ENST00000365690 78 ntBASIC0.34□□□□□ -2.36
NKX3-1Q99801 MIR635-201ENST00000384830 98 ntBASIC0.34□□□□□ -2.36
NKX3-1Q99801 RNA5SP193-201ENST00000410353 107 ntBASIC0.34□□□□□ -2.36
NKX3-1Q99801 AC069271.1-201ENST00000445577 156 ntBASIC0.34□□□□□ -2.36
NKX3-1Q99801 AC244505.6-201ENST00000452829 130 ntBASIC0.34□□□□□ -2.36
NKX3-1Q99801 MIR548H5-201ENST00000580314 60 ntBASIC0.34□□□□□ -2.36
NKX3-1Q99801 MIR6779-201ENST00000617283 64 ntBASIC0.34□□□□□ -2.36
NKX3-1Q99801 RNU6-363P-201ENST00000362895 105 ntBASIC0.33□□□□□ -2.36
NKX3-1Q99801 Y_RNA.247-201ENST00000364500 92 ntBASIC0.33□□□□□ -2.36
NKX3-1Q99801 RNU4-67P-201ENST00000364569 141 ntBASIC0.33□□□□□ -2.36
NKX3-1Q99801 SNORD71-201ENST00000411292 86 ntBASIC0.33□□□□□ -2.36
NKX3-1Q99801 RNA5SP227-201ENST00000516184 113 ntBASIC0.33□□□□□ -2.36
NKX3-1Q99801 RNU6-135P-201ENST00000516769 101 ntBASIC0.33□□□□□ -2.36
NKX3-1Q99801 RNU7-161P-201ENST00000517289 62 ntBASIC0.33□□□□□ -2.36
NKX3-1Q99801 AC138869.1-201ENST00000568623 124 ntBASIC0.33□□□□□ -2.36
NKX3-1Q99801 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.33□□□□□ -2.36
NKX3-1Q99801 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.33□□□□□ -2.36
NKX3-1Q99801 Y_RNA.71-201ENST00000362892 104 ntBASIC0.32□□□□□ -2.36
NKX3-1Q99801 RNY4P6-201ENST00000363667 96 ntBASIC0.32□□□□□ -2.36
NKX3-1Q99801 RNU6-704P-201ENST00000364162 103 ntBASIC0.32□□□□□ -2.36
NKX3-1Q99801 Y_RNA.221-201ENST00000364248 96 ntBASIC0.32□□□□□ -2.36
NKX3-1Q99801 RNU6-716P-201ENST00000365621 103 ntBASIC0.32□□□□□ -2.36
NKX3-1Q99801 SNORA50A-201ENST00000384225 134 ntBASIC0.32□□□□□ -2.36
NKX3-1Q99801 SNRPGP12-201ENST00000449481 213 ntBASIC0.32□□□□□ -2.36
NKX3-1Q99801 RNU7-106P-201ENST00000459514 67 ntBASIC0.32□□□□□ -2.36
NKX3-1Q99801 AC010487.4-201ENST00000637027 61 ntBASIC0.32□□□□□ -2.36
NKX3-1Q99801 Y_RNA.346-201ENST00000365385 112 ntBASIC0.31□□□□□ -2.36
NKX3-1Q99801 Y_RNA.362-201ENST00000365518 110 ntBASIC0.31□□□□□ -2.36
NKX3-1Q99801 RNU6-80P-201ENST00000384195 107 ntBASIC0.31□□□□□ -2.36
NKX3-1Q99801 Y_RNA.540-201ENST00000384638 111 ntBASIC0.31□□□□□ -2.36
NKX3-1Q99801 RNU6-1006P-201ENST00000516998 103 ntBASIC0.31□□□□□ -2.36
NKX3-1Q99801 MIR1273G-201ENST00000577677 100 ntBASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 221 ms