Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.54□□□□□ -2.16
BRF1Q92994 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
BRF1Q92994 SNORD116-22-201ENST00000384430 92 ntBASIC1.53□□□□□ -2.16
BRF1Q92994 SNORA26.2-201ENST00000390922 122 ntBASIC1.53□□□□□ -2.16
BRF1Q92994 Y_RNA.593-201ENST00000410292 98 ntBASIC1.53□□□□□ -2.16
BRF1Q92994 RNY4P29-201ENST00000410801 97 ntBASIC1.53□□□□□ -2.16
BRF1Q92994 BX276092.1-201ENST00000427368 251 ntBASIC1.53□□□□□ -2.16
BRF1Q92994 RPS29P23-201ENST00000458635 123 ntBASIC1.53□□□□□ -2.16
BRF1Q92994 RNU7-95P-201ENST00000459222 64 ntBASIC1.53□□□□□ -2.16
BRF1Q92994 RNU6-765P-201ENST00000516916 99 ntBASIC1.53□□□□□ -2.16
BRF1Q92994 MIR4421-201ENST00000578133 69 ntBASIC1.53□□□□□ -2.16
BRF1Q92994 MIR4524B-201ENST00000581569 115 ntBASIC1.53□□□□□ -2.16
BRF1Q92994 AC020891.4-201ENST00000605745 93 ntBASIC1.53□□□□□ -2.16
BRF1Q92994 AL512598.1-201ENST00000610158 273 ntBASIC1.53□□□□□ -2.16
BRF1Q92994 RNU6-403P-201ENST00000363163 104 ntBASIC1.52□□□□□ -2.17
BRF1Q92994 RNU6-675P-201ENST00000384236 104 ntBASIC1.52□□□□□ -2.17
BRF1Q92994 MIR4771-2-201ENST00000577758 74 ntBASIC1.52□□□□□ -2.17
BRF1Q92994 MIR4771-1-201ENST00000582617 74 ntBASIC1.52□□□□□ -2.17
BRF1Q92994 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.52□□□□□ -2.17
BRF1Q92994 MIR6082-201ENST00000613604 109 ntBASIC1.52□□□□□ -2.17
BRF1Q92994 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.52□□□□□ -2.17
BRF1Q92994 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.52□□□□□ -2.17
BRF1Q92994 RNU7-40P-201ENST00000516397 64 ntBASIC1.51□□□□□ -2.17
BRF1Q92994 AC062037.1-201ENST00000605302 128 ntBASIC1.51□□□□□ -2.17
BRF1Q92994 AC025521.1-201ENST00000621624 286 ntBASIC1.51□□□□□ -2.17
BRF1Q92994 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
BRF1Q92994 Y_RNA.13-201ENST00000362403 112 ntBASIC1.5□□□□□ -2.17
BRF1Q92994 RNU6-369P-201ENST00000362515 102 ntBASIC1.5□□□□□ -2.17
BRF1Q92994 Y_RNA.57-201ENST00000362806 113 ntBASIC1.5□□□□□ -2.17
BRF1Q92994 SNORA72.6-201ENST00000384520 129 ntBASIC1.5□□□□□ -2.17
BRF1Q92994 SNORA40.6-201ENST00000391153 128 ntBASIC1.5□□□□□ -2.17
BRF1Q92994 MIR3660-201ENST00000584845 100 ntBASIC1.5□□□□□ -2.17
BRF1Q92994 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
BRF1Q92994 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.5□□□□□ -2.17
BRF1Q92994 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
BRF1Q92994 Y_RNA.42-201ENST00000362660 108 ntBASIC1.49□□□□□ -2.17
BRF1Q92994 Y_RNA.388-201ENST00000383919 113 ntBASIC1.49□□□□□ -2.17
BRF1Q92994 SNORA25-201ENST00000384384 134 ntBASIC1.49□□□□□ -2.17
BRF1Q92994 RNU6-955P-201ENST00000410497 104 ntBASIC1.49□□□□□ -2.17
BRF1Q92994 RN7SKP12-201ENST00000516275 143 ntBASIC1.49□□□□□ -2.17
BRF1Q92994 MIR3124-201ENST00000582636 67 ntBASIC1.49□□□□□ -2.17
BRF1Q92994 MIR4676-201ENST00000583078 72 ntBASIC1.49□□□□□ -2.17
BRF1Q92994 SNORD92-201ENST00000585078 85 ntBASIC1.49□□□□□ -2.17
BRF1Q92994 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
BRF1Q92994 RNY1P10-201ENST00000363268 113 ntBASIC1.48□□□□□ -2.17
BRF1Q92994 RNU6-219P-201ENST00000364728 107 ntBASIC1.48□□□□□ -2.17
BRF1Q92994 AC002429.1-201ENST00000437672 148 ntBASIC1.48□□□□□ -2.17
BRF1Q92994 RNU7-156P-201ENST00000517214 74 ntBASIC1.48□□□□□ -2.17
BRF1Q92994 MIR4668-201ENST00000582284 70 ntBASIC1.48□□□□□ -2.17
BRF1Q92994 AC013244.2-201ENST00000603396 103 ntBASIC1.48□□□□□ -2.17
BRF1Q92994 RNU7-10P-201ENST00000607194 63 ntBASIC1.48□□□□□ -2.17
BRF1Q92994 Y_RNA.56-201ENST00000362798 112 ntBASIC1.47□□□□□ -2.17
BRF1Q92994 SNORA7.1-201ENST00000363750 139 ntBASIC1.47□□□□□ -2.17
BRF1Q92994 SNORD26-201ENST00000384147 75 ntBASIC1.47□□□□□ -2.17
BRF1Q92994 RNU6-1152P-201ENST00000384576 107 ntBASIC1.47□□□□□ -2.17
BRF1Q92994 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
BRF1Q92994 MIR938-201ENST00000401216 83 ntBASIC1.47□□□□□ -2.17
BRF1Q92994 RNU6-994P-201ENST00000410507 111 ntBASIC1.47□□□□□ -2.17
BRF1Q92994 RNU6-402P-201ENST00000410678 103 ntBASIC1.47□□□□□ -2.17
BRF1Q92994 Y_RNA.620-201ENST00000411009 88 ntBASIC1.47□□□□□ -2.17
BRF1Q92994 AC015818.7-201ENST00000428754 109 ntBASIC1.47□□□□□ -2.17
BRF1Q92994 AC087499.7-201ENST00000441958 109 ntBASIC1.47□□□□□ -2.17
BRF1Q92994 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.47□□□□□ -2.17
BRF1Q92994 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
BRF1Q92994 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
BRF1Q92994 MIR101-2-201ENST00000362195 79 ntBASIC1.46□□□□□ -2.18
BRF1Q92994 RNA5SP327-201ENST00000362494 101 ntBASIC1.46□□□□□ -2.18
BRF1Q92994 RNU6-482P-201ENST00000391068 107 ntBASIC1.46□□□□□ -2.18
BRF1Q92994 RNU6-1254P-201ENST00000391266 104 ntBASIC1.46□□□□□ -2.18
BRF1Q92994 SNORD100-201ENST00000408573 76 ntBASIC1.46□□□□□ -2.18
BRF1Q92994 AP1B1P2-201ENST00000416196 106 ntBASIC1.46□□□□□ -2.18
BRF1Q92994 AL161932.1-201ENST00000437408 146 ntBASIC1.46□□□□□ -2.18
BRF1Q92994 MIR548H5-201ENST00000580314 60 ntBASIC1.46□□□□□ -2.18
BRF1Q92994 IGLL4P-201ENST00000614590 133 ntBASIC1.46□□□□□ -2.18
BRF1Q92994 SNORD36A-201ENST00000362874 73 ntBASIC1.45□□□□□ -2.18
BRF1Q92994 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
BRF1Q92994 MIR519A1-201ENST00000385257 85 ntBASIC1.45□□□□□ -2.18
BRF1Q92994 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.45□□□□□ -2.18
BRF1Q92994 Y_RNA.609-201ENST00000410669 89 ntBASIC1.45□□□□□ -2.18
BRF1Q92994 MIR4804-201ENST00000581683 73 ntBASIC1.45□□□□□ -2.18
BRF1Q92994 MIR4781-201ENST00000585250 76 ntBASIC1.45□□□□□ -2.18
BRF1Q92994 AC027335.2-201ENST00000624030 375 ntBASIC1.45□□□□□ -2.18
BRF1Q92994 MIR1-1-201ENST00000362147 71 ntBASIC1.44□□□□□ -2.18
BRF1Q92994 RNY1P1-201ENST00000364372 112 ntBASIC1.44□□□□□ -2.18
BRF1Q92994 RNU6-497P-201ENST00000365316 104 ntBASIC1.44□□□□□ -2.18
BRF1Q92994 RNU6-364P-201ENST00000384387 107 ntBASIC1.44□□□□□ -2.18
BRF1Q92994 MIR19B1-201ENST00000384829 87 ntBASIC1.44□□□□□ -2.18
BRF1Q92994 MIR635-201ENST00000384830 98 ntBASIC1.44□□□□□ -2.18
BRF1Q92994 MIR516A2-201ENST00000384888 90 ntBASIC1.44□□□□□ -2.18
BRF1Q92994 MIR222-201ENST00000384992 110 ntBASIC1.44□□□□□ -2.18
BRF1Q92994 MIR516A1-201ENST00000385033 90 ntBASIC1.44□□□□□ -2.18
BRF1Q92994 MIR1827-201ENST00000408549 66 ntBASIC1.44□□□□□ -2.18
BRF1Q92994 Y_RNA.648-201ENST00000459455 110 ntBASIC1.44□□□□□ -2.18
BRF1Q92994 snoMBII-202.2-201ENST00000517263 86 ntBASIC1.44□□□□□ -2.18
BRF1Q92994 MIR494-201ENST00000349529 81 ntBASIC1.43□□□□□ -2.18
BRF1Q92994 RNU6-633P-201ENST00000362612 103 ntBASIC1.43□□□□□ -2.18
BRF1Q92994 RNY1P4-201ENST00000384595 115 ntBASIC1.43□□□□□ -2.18
BRF1Q92994 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.43□□□□□ -2.18
BRF1Q92994 SNORD63B-201ENST00000411005 70 ntBASIC1.43□□□□□ -2.18
BRF1Q92994 RNU7-56P-201ENST00000458744 62 ntBASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 166.2 ms