Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2□□□□□ -2.09
DEPDC4Q8N2C3 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
DEPDC4Q8N2C3 MIR101-2-201ENST00000362195 79 ntBASIC2□□□□□ -2.09
DEPDC4Q8N2C3 Y_RNA.56-201ENST00000362798 112 ntBASIC2□□□□□ -2.09
DEPDC4Q8N2C3 Y_RNA.437-201ENST00000384113 113 ntBASIC2□□□□□ -2.09
DEPDC4Q8N2C3 MIR516A2-201ENST00000384888 90 ntBASIC2□□□□□ -2.09
DEPDC4Q8N2C3 MIR516A1-201ENST00000385033 90 ntBASIC2□□□□□ -2.09
DEPDC4Q8N2C3 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2□□□□□ -2.09
DEPDC4Q8N2C3 RNU6-279P-201ENST00000391297 101 ntBASIC2□□□□□ -2.09
DEPDC4Q8N2C3 SNORD100-201ENST00000408573 76 ntBASIC2□□□□□ -2.09
DEPDC4Q8N2C3 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2□□□□□ -2.09
DEPDC4Q8N2C3 RNU7-90P-201ENST00000459216 62 ntBASIC2□□□□□ -2.09
DEPDC4Q8N2C3 AL353997.5-201ENST00000618886 171 ntBASIC2□□□□□ -2.09
DEPDC4Q8N2C3 uc_338.20-201ENST00000621563 178 ntBASIC2□□□□□ -2.09
DEPDC4Q8N2C3 SNORD63B-201ENST00000411005 70 ntBASIC1.99□□□□□ -2.09
DEPDC4Q8N2C3 RPS26P5-201ENST00000418544 335 ntBASIC1.99□□□□□ -2.09
DEPDC4Q8N2C3 RNU7-85P-201ENST00000458851 63 ntBASIC1.99□□□□□ -2.09
DEPDC4Q8N2C3 Y_RNA.13-201ENST00000362403 112 ntBASIC1.98□□□□□ -2.09
DEPDC4Q8N2C3 RNU6-524P-201ENST00000384270 107 ntBASIC1.98□□□□□ -2.09
DEPDC4Q8N2C3 MIR635-201ENST00000384830 98 ntBASIC1.98□□□□□ -2.09
DEPDC4Q8N2C3 SNORD12-201ENST00000391002 90 ntBASIC1.98□□□□□ -2.09
DEPDC4Q8N2C3 SNORD79.1-201ENST00000516069 84 ntBASIC1.98□□□□□ -2.09
DEPDC4Q8N2C3 RNA5SP200-201ENST00000516360 103 ntBASIC1.98□□□□□ -2.09
DEPDC4Q8N2C3 MIR4771-2-201ENST00000577758 74 ntBASIC1.98□□□□□ -2.09
DEPDC4Q8N2C3 MIR4771-1-201ENST00000582617 74 ntBASIC1.98□□□□□ -2.09
DEPDC4Q8N2C3 AC013244.2-201ENST00000603396 103 ntBASIC1.98□□□□□ -2.09
DEPDC4Q8N2C3 Y_RNA.42-201ENST00000362660 108 ntBASIC1.97□□□□□ -2.09
DEPDC4Q8N2C3 RNU6-910P-201ENST00000390844 107 ntBASIC1.97□□□□□ -2.09
DEPDC4Q8N2C3 MIR5002-201ENST00000584713 97 ntBASIC1.97□□□□□ -2.09
DEPDC4Q8N2C3 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
DEPDC4Q8N2C3 Y_RNA.536-201ENST00000384621 113 ntBASIC1.96□□□□□ -2.1
DEPDC4Q8N2C3 U8.13-201ENST00000390842 128 ntBASIC1.96□□□□□ -2.1
DEPDC4Q8N2C3 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.95□□□□□ -2.1
DEPDC4Q8N2C3 RNU6-466P-201ENST00000391224 103 ntBASIC1.95□□□□□ -2.1
DEPDC4Q8N2C3 RNA5SP225-201ENST00000410874 135 ntBASIC1.95□□□□□ -2.1
DEPDC4Q8N2C3 RNU7-106P-201ENST00000459514 67 ntBASIC1.95□□□□□ -2.1
DEPDC4Q8N2C3 AC140658.3-201ENST00000567603 271 ntBASIC1.95□□□□□ -2.1
DEPDC4Q8N2C3 MIR4536-1-201ENST00000583537 88 ntBASIC1.95□□□□□ -2.1
DEPDC4Q8N2C3 SNORD92-201ENST00000585078 85 ntBASIC1.95□□□□□ -2.1
DEPDC4Q8N2C3 Y_RNA.283-201ENST00000364798 112 ntBASIC1.94□□□□□ -2.1
DEPDC4Q8N2C3 RNA5SP160-201ENST00000364866 120 ntBASIC1.94□□□□□ -2.1
DEPDC4Q8N2C3 Y_RNA.313-201ENST00000365095 103 ntBASIC1.94□□□□□ -2.1
DEPDC4Q8N2C3 snoU13.11-201ENST00000459219 104 ntBASIC1.94□□□□□ -2.1
DEPDC4Q8N2C3 AC023790.1-201ENST00000482174 347 ntBASIC1.94□□□□□ -2.1
DEPDC4Q8N2C3 RNU6-65P-201ENST00000516332 98 ntBASIC1.94□□□□□ -2.1
DEPDC4Q8N2C3 RNU7-40P-201ENST00000516397 64 ntBASIC1.94□□□□□ -2.1
DEPDC4Q8N2C3 AC023827.1-201ENST00000569247 97 ntBASIC1.94□□□□□ -2.1
DEPDC4Q8N2C3 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.94□□□□□ -2.1
DEPDC4Q8N2C3 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.93□□□□□ -2.1
DEPDC4Q8N2C3 TRAJ51-201ENST00000504127 63 ntBASIC1.93□□□□□ -2.1
DEPDC4Q8N2C3 RNU7-156P-201ENST00000517214 74 ntBASIC1.93□□□□□ -2.1
DEPDC4Q8N2C3 MIR4676-201ENST00000583078 72 ntBASIC1.93□□□□□ -2.1
DEPDC4Q8N2C3 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
DEPDC4Q8N2C3 RNU6-1260P-201ENST00000362944 107 ntBASIC1.92□□□□□ -2.1
DEPDC4Q8N2C3 Y_RNA.316-201ENST00000365118 111 ntBASIC1.92□□□□□ -2.1
DEPDC4Q8N2C3 MIR938-201ENST00000401216 83 ntBASIC1.92□□□□□ -2.1
DEPDC4Q8N2C3 AC092628.1-201ENST00000436250 252 ntBASIC1.92□□□□□ -2.1
DEPDC4Q8N2C3 SNORA70.22-201ENST00000517160 124 ntBASIC1.92□□□□□ -2.1
DEPDC4Q8N2C3 MIR219B-201ENST00000637023 88 ntBASIC1.92□□□□□ -2.1
DEPDC4Q8N2C3 RNU4-32P-201ENST00000363404 141 ntBASIC1.91□□□□□ -2.1
DEPDC4Q8N2C3 Y_RNA.338-201ENST00000365320 114 ntBASIC1.91□□□□□ -2.1
DEPDC4Q8N2C3 RNU6-652P-201ENST00000365488 107 ntBASIC1.91□□□□□ -2.1
DEPDC4Q8N2C3 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC1.91□□□□□ -2.1
DEPDC4Q8N2C3 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.91□□□□□ -2.1
DEPDC4Q8N2C3 MIR4285-201ENST00000581001 85 ntBASIC1.91□□□□□ -2.1
DEPDC4Q8N2C3 AL645939.4-201ENST00000604495 135 ntBASIC1.91□□□□□ -2.1
DEPDC4Q8N2C3 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.9□□□□□ -2.1
DEPDC4Q8N2C3 RNU6-811P-201ENST00000384069 107 ntBASIC1.9□□□□□ -2.11
DEPDC4Q8N2C3 RNU6-24P-201ENST00000384440 107 ntBASIC1.9□□□□□ -2.11
DEPDC4Q8N2C3 RNU6-994P-201ENST00000410507 111 ntBASIC1.9□□□□□ -2.11
DEPDC4Q8N2C3 AC097635.1-201ENST00000450678 155 ntBASIC1.9□□□□□ -2.11
DEPDC4Q8N2C3 RNU6-75P-201ENST00000515944 104 ntBASIC1.9□□□□□ -2.11
DEPDC4Q8N2C3 Y_RNA.697-201ENST00000516776 113 ntBASIC1.9□□□□□ -2.11
DEPDC4Q8N2C3 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC1.9□□□□□ -2.11
DEPDC4Q8N2C3 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.9□□□□□ -2.11
DEPDC4Q8N2C3 AC012493.3-201ENST00000604494 112 ntBASIC1.9□□□□□ -2.11
DEPDC4Q8N2C3 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
DEPDC4Q8N2C3 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
DEPDC4Q8N2C3 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
DEPDC4Q8N2C3 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
DEPDC4Q8N2C3 RNU6-369P-201ENST00000362515 102 ntBASIC1.89□□□□□ -2.11
DEPDC4Q8N2C3 RNU6-364P-201ENST00000384387 107 ntBASIC1.89□□□□□ -2.11
DEPDC4Q8N2C3 Y_RNA.508-201ENST00000384502 114 ntBASIC1.89□□□□□ -2.11
DEPDC4Q8N2C3 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.89□□□□□ -2.11
DEPDC4Q8N2C3 SUMO2P12-201ENST00000405924 140 ntBASIC1.89□□□□□ -2.11
DEPDC4Q8N2C3 RNU6-857P-201ENST00000515893 110 ntBASIC1.89□□□□□ -2.11
DEPDC4Q8N2C3 Y_RNA.809-201ENST00000516058 95 ntBASIC1.89□□□□□ -2.11
DEPDC4Q8N2C3 SNORA25.13-201ENST00000516395 103 ntBASIC1.89□□□□□ -2.11
DEPDC4Q8N2C3 RNU6-448P-201ENST00000517052 107 ntBASIC1.89□□□□□ -2.11
DEPDC4Q8N2C3 AC138907.6-201ENST00000568401 126 ntBASIC1.89□□□□□ -2.11
DEPDC4Q8N2C3 AC138869.1-201ENST00000568623 124 ntBASIC1.89□□□□□ -2.11
DEPDC4Q8N2C3 AC027335.2-201ENST00000624030 375 ntBASIC1.89□□□□□ -2.11
DEPDC4Q8N2C3 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
DEPDC4Q8N2C3 Y_RNA.164-201ENST00000363709 102 ntBASIC1.88□□□□□ -2.11
DEPDC4Q8N2C3 MIR548U-201ENST00000390728 81 ntBASIC1.88□□□□□ -2.11
DEPDC4Q8N2C3 RNU7-195P-201ENST00000458793 62 ntBASIC1.88□□□□□ -2.11
DEPDC4Q8N2C3 AL359821.1-201ENST00000605519 182 ntBASIC1.88□□□□□ -2.11
DEPDC4Q8N2C3 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.88□□□□□ -2.11
DEPDC4Q8N2C3 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.87□□□□□ -2.11
DEPDC4Q8N2C3 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 212.3 ms