Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC-1.75□□□□□ -2.69
USP54Q70EL1 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC-1.75□□□□□ -2.69
USP54Q70EL1 Y_RNA.190-201ENST00000363964 101 ntBASIC-1.76□□□□□ -2.69
USP54Q70EL1 Y_RNA.569-201ENST00000384749 103 ntBASIC-1.76□□□□□ -2.69
USP54Q70EL1 Y_RNA.646-201ENST00000410980 101 ntBASIC-1.76□□□□□ -2.69
USP54Q70EL1 RNU6-453P-201ENST00000516819 85 ntBASIC-1.76□□□□□ -2.69
USP54Q70EL1 RNU6-699P-201ENST00000517081 110 ntBASIC-1.76□□□□□ -2.69
USP54Q70EL1 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.76□□□□□ -2.69
USP54Q70EL1 Y_RNA.114-201ENST00000363265 113 ntBASIC-1.77□□□□□ -2.69
USP54Q70EL1 SNORD113-8-201ENST00000363497 74 ntBASIC-1.77□□□□□ -2.69
USP54Q70EL1 Y_RNA.813-201ENST00000364639 102 ntBASIC-1.77□□□□□ -2.69
USP54Q70EL1 MIR1270-201ENST00000459320 83 ntBASIC-1.77□□□□□ -2.69
USP54Q70EL1 SNORD116-25-201ENST00000516517 92 ntBASIC-1.77□□□□□ -2.69
USP54Q70EL1 Y_RNA.9-201ENST00000362354 101 ntBASIC-1.77□□□□□ -2.69
USP54Q70EL1 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC-1.77□□□□□ -2.69
USP54Q70EL1 Y_RNA.653-201ENST00000459091 95 ntBASIC-1.77□□□□□ -2.69
USP54Q70EL1 RNA5SP272-201ENST00000516095 111 ntBASIC-1.77□□□□□ -2.69
USP54Q70EL1 RNU6-479P-201ENST00000516348 105 ntBASIC-1.77□□□□□ -2.69
USP54Q70EL1 SNORA40.14-201ENST00000516543 86 ntBASIC-1.77□□□□□ -2.69
USP54Q70EL1 RNU6-1213P-201ENST00000517075 94 ntBASIC-1.77□□□□□ -2.69
USP54Q70EL1 Y_RNA.360-201ENST00000365512 102 ntBASIC-1.78□□□□□ -2.69
USP54Q70EL1 MIR889-201ENST00000401280 79 ntBASIC-1.78□□□□□ -2.69
USP54Q70EL1 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-1.78□□□□□ -2.69
USP54Q70EL1 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.79□□□□□ -2.7
USP54Q70EL1 MIR3611-201ENST00000584484 83 ntBASIC-1.79□□□□□ -2.7
USP54Q70EL1 AC022079.1-201ENST00000621546 602 ntBASIC-1.79□□□□□ -2.7
USP54Q70EL1 Y_RNA.214-201ENST00000364201 112 ntBASIC-1.8□□□□□ -2.7
USP54Q70EL1 Y_RNA.352-201ENST00000365439 102 ntBASIC-1.8□□□□□ -2.7
USP54Q70EL1 RNU6-337P-201ENST00000391243 106 ntBASIC-1.8□□□□□ -2.7
USP54Q70EL1 MIR548E-201ENST00000408287 88 ntBASIC-1.8□□□□□ -2.7
USP54Q70EL1 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC-1.8□□□□□ -2.7
USP54Q70EL1 HSPE1P25-201ENST00000455484 251 ntBASIC-1.8□□□□□ -2.7
USP54Q70EL1 Y_RNA.89-201ENST00000363031 102 ntBASIC-1.8□□□□□ -2.7
USP54Q70EL1 Y_RNA.176-201ENST00000363815 109 ntBASIC-1.8□□□□□ -2.7
USP54Q70EL1 SNORD27-201ENST00000363981 72 ntBASIC-1.8□□□□□ -2.7
USP54Q70EL1 RNU6-310P-201ENST00000384655 107 ntBASIC-1.8□□□□□ -2.7
USP54Q70EL1 MIRLET7B-201ENST00000385140 83 ntBASIC-1.8□□□□□ -2.7
USP54Q70EL1 RNU2-4P-201ENST00000606190 192 ntBASIC-1.8□□□□□ -2.7
USP54Q70EL1 MIR376B-201ENST00000614515 100 ntBASIC-1.8□□□□□ -2.7
USP54Q70EL1 AL138825.1-201ENST00000618587 192 ntBASIC-1.8□□□□□ -2.7
USP54Q70EL1 U6.100-201ENST00000636230 99 ntBASIC-1.8□□□□□ -2.7
USP54Q70EL1 MIR527-201ENST00000385244 85 ntBASIC-1.81□□□□□ -2.7
USP54Q70EL1 RNU6-588P-201ENST00000410281 105 ntBASIC-1.81□□□□□ -2.7
USP54Q70EL1 RNU4-14P-201ENST00000410858 122 ntBASIC-1.81□□□□□ -2.7
USP54Q70EL1 AC022028.1-201ENST00000412054 408 ntBASIC-1.81□□□□□ -2.7
USP54Q70EL1 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC-1.81□□□□□ -2.7
USP54Q70EL1 RNU7-30P-201ENST00000516835 62 ntBASIC-1.81□□□□□ -2.7
USP54Q70EL1 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC-1.81□□□□□ -2.7
USP54Q70EL1 MIR6773-201ENST00000612812 74 ntBASIC-1.81□□□□□ -2.7
USP54Q70EL1 Y_RNA.573-201ENST00000384763 105 ntBASIC-1.82□□□□□ -2.7
USP54Q70EL1 AC082651.2-201ENST00000496833 166 ntBASIC-1.82□□□□□ -2.7
USP54Q70EL1 RNU2-35P-201ENST00000516446 142 ntBASIC-1.82□□□□□ -2.7
USP54Q70EL1 AL353803.5-201ENST00000599815 141 ntBASIC-1.82□□□□□ -2.7
USP54Q70EL1 AC025253.1-201ENST00000613623 543 ntBASIC-1.82□□□□□ -2.7
USP54Q70EL1 RNU6-472P-201ENST00000384299 107 ntBASIC-1.83□□□□□ -2.7
USP54Q70EL1 RNU7-134P-201ENST00000458997 64 ntBASIC-1.83□□□□□ -2.7
USP54Q70EL1 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.83□□□□□ -2.7
USP54Q70EL1 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.83□□□□□ -2.7
USP54Q70EL1 MIR616-201ENST00000385293 97 ntBASIC-1.83□□□□□ -2.7
USP54Q70EL1 RNU6-1149P-201ENST00000516810 97 ntBASIC-1.83□□□□□ -2.7
USP54Q70EL1 AC103591.3-201ENST00000608684 209 ntBASIC-1.83□□□□□ -2.7
USP54Q70EL1 TRDV1-202ENST00000621643 102 ntBASIC-1.83□□□□□ -2.7
USP54Q70EL1 RNU6-1272P-201ENST00000362776 107 ntBASIC-1.84□□□□□ -2.7
USP54Q70EL1 Y_RNA.602-201ENST00000410535 92 ntBASIC-1.84□□□□□ -2.7
USP54Q70EL1 Y_RNA.679-201ENST00000516416 91 ntBASIC-1.84□□□□□ -2.7
USP54Q70EL1 AC087741.2-201ENST00000619415 172 ntBASIC-1.84□□□□□ -2.7
USP54Q70EL1 RNU6-208P-201ENST00000362431 107 ntBASIC-1.85□□□□□ -2.71
USP54Q70EL1 RNU6-845P-201ENST00000362578 103 ntBASIC-1.85□□□□□ -2.71
USP54Q70EL1 RNU6-690P-201ENST00000365242 106 ntBASIC-1.85□□□□□ -2.71
USP54Q70EL1 RNU6-662P-201ENST00000384253 104 ntBASIC-1.85□□□□□ -2.71
USP54Q70EL1 SNORD38.2-201ENST00000384470 69 ntBASIC-1.85□□□□□ -2.71
USP54Q70EL1 SNORD77B-201ENST00000391112 67 ntBASIC-1.85□□□□□ -2.71
USP54Q70EL1 U3.27-201ENST00000391237 200 ntBASIC-1.85□□□□□ -2.71
USP54Q70EL1 RNU6-561P-201ENST00000516222 102 ntBASIC-1.85□□□□□ -2.71
USP54Q70EL1 MIR4308-201ENST00000580634 81 ntBASIC-1.85□□□□□ -2.71
USP54Q70EL1 AC084782.3-201ENST00000612282 578 ntBASIC-1.86□□□□□ -2.71
USP54Q70EL1 MIR6502-201ENST00000617296 76 ntBASIC-1.86□□□□□ -2.71
USP54Q70EL1 MIR4272-201ENST00000635924 64 ntBASIC-1.86□□□□□ -2.71
USP54Q70EL1 RNU6-924P-201ENST00000362926 108 ntBASIC-1.86□□□□□ -2.71
USP54Q70EL1 Y_RNA.353-201ENST00000365440 108 ntBASIC-1.86□□□□□ -2.71
USP54Q70EL1 Y_RNA.389-201ENST00000383924 113 ntBASIC-1.86□□□□□ -2.71
USP54Q70EL1 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.86□□□□□ -2.71
USP54Q70EL1 RNU6-890P-201ENST00000384121 107 ntBASIC-1.86□□□□□ -2.71
USP54Q70EL1 MIR496-201ENST00000385226 102 ntBASIC-1.86□□□□□ -2.71
USP54Q70EL1 RNU6-576P-201ENST00000390854 102 ntBASIC-1.86□□□□□ -2.71
USP54Q70EL1 RNU6-592P-201ENST00000411333 103 ntBASIC-1.86□□□□□ -2.71
USP54Q70EL1 Y_RNA.639-201ENST00000458981 102 ntBASIC-1.86□□□□□ -2.71
USP54Q70EL1 AC245505.1-201ENST00000556398 224 ntBASIC-1.86□□□□□ -2.71
USP54Q70EL1 Y_RNA.80-201ENST00000362996 102 ntBASIC-1.87□□□□□ -2.71
USP54Q70EL1 RNU6-211P-201ENST00000384047 107 ntBASIC-1.87□□□□□ -2.71
USP54Q70EL1 Y_RNA.485-201ENST00000384395 102 ntBASIC-1.87□□□□□ -2.71
USP54Q70EL1 SNORA20.3-201ENST00000516880 132 ntBASIC-1.87□□□□□ -2.71
USP54Q70EL1 AC084781.2-201ENST00000615568 161 ntBASIC-1.87□□□□□ -2.71
USP54Q70EL1 MIR376A1-201ENST00000616574 68 ntBASIC-1.87□□□□□ -2.71
USP54Q70EL1 AC078883.4-201ENST00000623218 367 ntBASIC-1.87□□□□□ -2.71
USP54Q70EL1 SNORD18.1-201ENST00000363807 70 ntBASIC-1.88□□□□□ -2.71
USP54Q70EL1 Y_RNA.217-201ENST00000364214 105 ntBASIC-1.88□□□□□ -2.71
USP54Q70EL1 RNU6-326P-201ENST00000365480 107 ntBASIC-1.88□□□□□ -2.71
USP54Q70EL1 Y_RNA.426-201ENST00000384068 113 ntBASIC-1.88□□□□□ -2.71
USP54Q70EL1 SNORD115-46-201ENST00000390982 71 ntBASIC-1.88□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 192.9 ms