Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 Y_RNA.540-201ENST00000384638 111 ntBASIC0.68□□□□□ -2.3
PPP4R4Q6NUP7 MIR508-201ENST00000384857 115 ntBASIC0.68□□□□□ -2.3
PPP4R4Q6NUP7 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.68□□□□□ -2.3
PPP4R4Q6NUP7 AL353813.1-201ENST00000440700 253 ntBASIC0.68□□□□□ -2.3
PPP4R4Q6NUP7 PVT1_3.1-201ENST00000620853 95 ntBASIC0.68□□□□□ -2.3
PPP4R4Q6NUP7 AP001362.1-201ENST00000625165 124 ntBASIC0.68□□□□□ -2.3
PPP4R4Q6NUP7 Y_RNA.71-201ENST00000362892 104 ntBASIC0.67□□□□□ -2.3
PPP4R4Q6NUP7 MIR34C-201ENST00000384831 77 ntBASIC0.67□□□□□ -2.3
PPP4R4Q6NUP7 RNU6-679P-201ENST00000391003 106 ntBASIC0.67□□□□□ -2.3
PPP4R4Q6NUP7 SUMO1P3-201ENST00000439961 304 ntBASIC0.67□□□□□ -2.3
PPP4R4Q6NUP7 RNU6-659P-201ENST00000516454 104 ntBASIC0.67□□□□□ -2.3
PPP4R4Q6NUP7 RNU6-521P-201ENST00000516663 105 ntBASIC0.67□□□□□ -2.3
PPP4R4Q6NUP7 Y_RNA.712-201ENST00000517011 92 ntBASIC0.67□□□□□ -2.3
PPP4R4Q6NUP7 MIR3914-2-201ENST00000637339 95 ntBASIC0.67□□□□□ -2.3
PPP4R4Q6NUP7 AL157777.2-201ENST00000258070 137 ntBASIC0.66□□□□□ -2.3
PPP4R4Q6NUP7 RNU6-733P-201ENST00000410759 104 ntBASIC0.66□□□□□ -2.3
PPP4R4Q6NUP7 uc_338.17-201ENST00000619633 179 ntBASIC0.66□□□□□ -2.3
PPP4R4Q6NUP7 Y_RNA.56-201ENST00000362798 112 ntBASIC0.65□□□□□ -2.31
PPP4R4Q6NUP7 MIR759-201ENST00000390224 91 ntBASIC0.65□□□□□ -2.31
PPP4R4Q6NUP7 MIR548M-201ENST00000408260 86 ntBASIC0.65□□□□□ -2.31
PPP4R4Q6NUP7 RNU6-865P-201ENST00000364772 107 ntBASIC0.64□□□□□ -2.31
PPP4R4Q6NUP7 Y_RNA.567-201ENST00000384736 106 ntBASIC0.64□□□□□ -2.31
PPP4R4Q6NUP7 MIR4500-201ENST00000579472 76 ntBASIC0.64□□□□□ -2.31
PPP4R4Q6NUP7 MIR4714-201ENST00000580728 77 ntBASIC0.64□□□□□ -2.31
PPP4R4Q6NUP7 AC092634.7-201ENST00000621022 103 ntBASIC0.64□□□□□ -2.31
PPP4R4Q6NUP7 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
PPP4R4Q6NUP7 Y_RNA.346-201ENST00000365385 112 ntBASIC0.63□□□□□ -2.31
PPP4R4Q6NUP7 SNORA8.2-201ENST00000384372 139 ntBASIC0.63□□□□□ -2.31
PPP4R4Q6NUP7 MIR216A-201ENST00000385063 110 ntBASIC0.63□□□□□ -2.31
PPP4R4Q6NUP7 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.63□□□□□ -2.31
PPP4R4Q6NUP7 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.63□□□□□ -2.31
PPP4R4Q6NUP7 SNORA68.3-201ENST00000515906 83 ntBASIC0.63□□□□□ -2.31
PPP4R4Q6NUP7 RN7SL793P-201ENST00000583259 296 ntBASIC0.63□□□□□ -2.31
PPP4R4Q6NUP7 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.63□□□□□ -2.31
PPP4R4Q6NUP7 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
PPP4R4Q6NUP7 MIR101-2-201ENST00000362195 79 ntBASIC0.62□□□□□ -2.31
PPP4R4Q6NUP7 RNU4-67P-201ENST00000364569 141 ntBASIC0.62□□□□□ -2.31
PPP4R4Q6NUP7 Y_RNA.360-201ENST00000365512 102 ntBASIC0.62□□□□□ -2.31
PPP4R4Q6NUP7 SNORD116-14-201ENST00000383894 92 ntBASIC0.62□□□□□ -2.31
PPP4R4Q6NUP7 SNORD116-17-201ENST00000383929 92 ntBASIC0.62□□□□□ -2.31
PPP4R4Q6NUP7 SNORD116-15-201ENST00000384445 92 ntBASIC0.62□□□□□ -2.31
PPP4R4Q6NUP7 SNORD28-201ENST00000384706 75 ntBASIC0.62□□□□□ -2.31
PPP4R4Q6NUP7 SNORD116-19-201ENST00000384729 92 ntBASIC0.62□□□□□ -2.31
PPP4R4Q6NUP7 BX276092.1-201ENST00000427368 251 ntBASIC0.62□□□□□ -2.31
PPP4R4Q6NUP7 AC244505.6-201ENST00000452829 130 ntBASIC0.62□□□□□ -2.31
PPP4R4Q6NUP7 RNU6-1006P-201ENST00000516998 103 ntBASIC0.62□□□□□ -2.31
PPP4R4Q6NUP7 RNA5SP47-201ENST00000517230 109 ntBASIC0.62□□□□□ -2.31
PPP4R4Q6NUP7 AL035470.1-201ENST00000622571 220 ntBASIC0.62□□□□□ -2.31
PPP4R4Q6NUP7 RNU6-363P-201ENST00000362895 105 ntBASIC0.61□□□□□ -2.31
PPP4R4Q6NUP7 RNY4P6-201ENST00000363667 96 ntBASIC0.61□□□□□ -2.31
PPP4R4Q6NUP7 Y_RNA.362-201ENST00000365518 110 ntBASIC0.61□□□□□ -2.31
PPP4R4Q6NUP7 RNU6-81P-201ENST00000365608 104 ntBASIC0.61□□□□□ -2.31
PPP4R4Q6NUP7 AC092628.1-201ENST00000436250 252 ntBASIC0.61□□□□□ -2.31
PPP4R4Q6NUP7 SNORD33.1-201ENST00000516213 88 ntBASIC0.61□□□□□ -2.31
PPP4R4Q6NUP7 RNU6-469P-201ENST00000516253 101 ntBASIC0.61□□□□□ -2.31
PPP4R4Q6NUP7 MIR6828-201ENST00000636181 60 ntBASIC0.61□□□□□ -2.31
PPP4R4Q6NUP7 SNRPGP12-201ENST00000449481 213 ntBASIC0.6□□□□□ -2.31
PPP4R4Q6NUP7 TRAJ51-201ENST00000504127 63 ntBASIC0.6□□□□□ -2.31
PPP4R4Q6NUP7 RNU6-135P-201ENST00000516769 101 ntBASIC0.6□□□□□ -2.31
PPP4R4Q6NUP7 MIR4639-201ENST00000584938 69 ntBASIC0.6□□□□□ -2.31
PPP4R4Q6NUP7 SNORA25.18-201ENST00000607153 114 ntBASIC0.6□□□□□ -2.31
PPP4R4Q6NUP7 SNORD118-201ENST00000363593 134 ntBASIC0.59□□□□□ -2.31
PPP4R4Q6NUP7 SNORA7.5-201ENST00000410672 110 ntBASIC0.59□□□□□ -2.31
PPP4R4Q6NUP7 RNA5SP436-201ENST00000516020 115 ntBASIC0.59□□□□□ -2.31
PPP4R4Q6NUP7 SCARNA16.5-201ENST00000517114 183 ntBASIC0.59□□□□□ -2.31
PPP4R4Q6NUP7 MIR6513-201ENST00000621188 64 ntBASIC0.59□□□□□ -2.31
PPP4R4Q6NUP7 RNU6-1313P-201ENST00000362622 102 ntBASIC0.58□□□□□ -2.32
PPP4R4Q6NUP7 RNY1P4-201ENST00000384595 115 ntBASIC0.58□□□□□ -2.32
PPP4R4Q6NUP7 RNU6-959P-201ENST00000384671 107 ntBASIC0.58□□□□□ -2.32
PPP4R4Q6NUP7 MIR518A1-201ENST00000385068 85 ntBASIC0.58□□□□□ -2.32
PPP4R4Q6NUP7 MIR92A1-201ENST00000385233 78 ntBASIC0.58□□□□□ -2.32
PPP4R4Q6NUP7 SNORA40.8-201ENST00000411034 126 ntBASIC0.58□□□□□ -2.32
PPP4R4Q6NUP7 MIR548H5-201ENST00000580314 60 ntBASIC0.58□□□□□ -2.32
PPP4R4Q6NUP7 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.58□□□□□ -2.32
PPP4R4Q6NUP7 MIR6779-201ENST00000617283 64 ntBASIC0.58□□□□□ -2.32
PPP4R4Q6NUP7 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.58□□□□□ -2.32
PPP4R4Q6NUP7 MIR4679-2-201ENST00000578358 77 ntBASIC0.57□□□□□ -2.32
PPP4R4Q6NUP7 MIR7107-201ENST00000611489 80 ntBASIC0.57□□□□□ -2.32
PPP4R4Q6NUP7 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.57□□□□□ -2.32
PPP4R4Q6NUP7 AC244669.1-204ENST00000621564 178 ntBASIC0.57□□□□□ -2.32
PPP4R4Q6NUP7 RNA5SP347-201ENST00000362445 119 ntBASIC0.56□□□□□ -2.32
PPP4R4Q6NUP7 Y_RNA.247-201ENST00000364500 92 ntBASIC0.56□□□□□ -2.32
PPP4R4Q6NUP7 Y_RNA.353-201ENST00000365440 108 ntBASIC0.56□□□□□ -2.32
PPP4R4Q6NUP7 Y_RNA.549-201ENST00000384657 102 ntBASIC0.56□□□□□ -2.32
PPP4R4Q6NUP7 AC098934.3-201ENST00000430450 190 ntBASIC0.56□□□□□ -2.32
PPP4R4Q6NUP7 Y_RNA.649-201ENST00000459077 103 ntBASIC0.56□□□□□ -2.32
PPP4R4Q6NUP7 RNA5SP268-201ENST00000516828 124 ntBASIC0.56□□□□□ -2.32
PPP4R4Q6NUP7 AC138869.1-201ENST00000568623 124 ntBASIC0.56□□□□□ -2.32
PPP4R4Q6NUP7 AL162726.3-218ENST00000636401 95 ntBASIC0.56□□□□□ -2.32
PPP4R4Q6NUP7 MIRLET7D-201ENST00000362263 87 ntBASIC0.55□□□□□ -2.32
PPP4R4Q6NUP7 Y_RNA.85-201ENST00000363014 111 ntBASIC0.55□□□□□ -2.32
PPP4R4Q6NUP7 RNU6-571P-201ENST00000384128 107 ntBASIC0.55□□□□□ -2.32
PPP4R4Q6NUP7 MIR548I2-201ENST00000408348 149 ntBASIC0.55□□□□□ -2.32
PPP4R4Q6NUP7 TMSB4XP3-201ENST00000445144 114 ntBASIC0.55□□□□□ -2.32
PPP4R4Q6NUP7 RNU6-1333P-201ENST00000516162 93 ntBASIC0.55□□□□□ -2.32
PPP4R4Q6NUP7 RNU6-229P-201ENST00000516614 102 ntBASIC0.55□□□□□ -2.32
PPP4R4Q6NUP7 AC007012.1-201ENST00000567192 175 ntBASIC0.55□□□□□ -2.32
PPP4R4Q6NUP7 U6.95-201ENST00000636931 70 ntBASIC0.55□□□□□ -2.32
PPP4R4Q6NUP7 SNORD114-23-201ENST00000363536 72 ntBASIC0.54□□□□□ -2.32
PPP4R4Q6NUP7 Y_RNA.205-201ENST00000364128 113 ntBASIC0.54□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 204.4 ms