Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MIR517C-201ENST00000385103 95 ntBASIC1.61□□□□□ -2.15
USP39Q53GS9 RNU7-85P-201ENST00000458851 63 ntBASIC1.61□□□□□ -2.15
USP39Q53GS9 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.61□□□□□ -2.15
USP39Q53GS9 RNU6-65P-201ENST00000516332 98 ntBASIC1.61□□□□□ -2.15
USP39Q53GS9 RNU7-153P-201ENST00000516455 62 ntBASIC1.61□□□□□ -2.15
USP39Q53GS9 MIR4500-201ENST00000579472 76 ntBASIC1.61□□□□□ -2.15
USP39Q53GS9 MIR4712-201ENST00000583750 82 ntBASIC1.61□□□□□ -2.15
USP39Q53GS9 GHRLOS.1-201ENST00000610995 70 ntBASIC1.61□□□□□ -2.15
USP39Q53GS9 AC008163.1-202ENST00000636004 2889 ntBASIC1.61□□□□□ -2.15
USP39Q53GS9 SNORA7.1-201ENST00000363750 139 ntBASIC1.6□□□□□ -2.15
USP39Q53GS9 RNU6-776P-201ENST00000364403 104 ntBASIC1.6□□□□□ -2.15
USP39Q53GS9 RNU6-392P-201ENST00000364926 101 ntBASIC1.6□□□□□ -2.15
USP39Q53GS9 RNU6-1022P-201ENST00000365049 104 ntBASIC1.6□□□□□ -2.15
USP39Q53GS9 RNU6-396P-201ENST00000365369 105 ntBASIC1.6□□□□□ -2.15
USP39Q53GS9 RNU6-997P-201ENST00000384725 107 ntBASIC1.6□□□□□ -2.15
USP39Q53GS9 RNU6-1165P-201ENST00000410119 107 ntBASIC1.6□□□□□ -2.15
USP39Q53GS9 AC245517.4-201ENST00000448601 281 ntBASIC1.6□□□□□ -2.15
USP39Q53GS9 HSPE1P24-201ENST00000450782 238 ntBASIC1.6□□□□□ -2.15
USP39Q53GS9 AC005908.1-201ENST00000468701 347 ntBASIC1.6□□□□□ -2.15
USP39Q53GS9 RNU6-850P-201ENST00000516934 103 ntBASIC1.6□□□□□ -2.15
USP39Q53GS9 RNU1-92P-201ENST00000517017 135 ntBASIC1.6□□□□□ -2.15
USP39Q53GS9 MIR4264-201ENST00000583520 66 ntBASIC1.6□□□□□ -2.15
USP39Q53GS9 SNORA4-201ENST00000584302 138 ntBASIC1.6□□□□□ -2.15
USP39Q53GS9 AL357312.1-201ENST00000603879 298 ntBASIC1.6□□□□□ -2.15
USP39Q53GS9 AP000753.3-201ENST00000604083 169 ntBASIC1.6□□□□□ -2.15
USP39Q53GS9 MIR8066-201ENST00000617280 78 ntBASIC1.6□□□□□ -2.15
USP39Q53GS9 U6.109-201ENST00000636749 87 ntBASIC1.6□□□□□ -2.15
USP39Q53GS9 ZNF209P-201ENST00000593450 2304 ntBASIC1.59□□□□□ -2.15
USP39Q53GS9 RNU6-205P-201ENST00000390858 107 ntBASIC1.59□□□□□ -2.15
USP39Q53GS9 MIR1185-1-201ENST00000408598 86 ntBASIC1.59□□□□□ -2.15
USP39Q53GS9 RNU6-519P-201ENST00000410590 108 ntBASIC1.59□□□□□ -2.15
USP39Q53GS9 BX276092.1-201ENST00000427368 251 ntBASIC1.59□□□□□ -2.15
USP39Q53GS9 Y_RNA.57-201ENST00000362806 113 ntBASIC1.58□□□□□ -2.16
USP39Q53GS9 Y_RNA.119-201ENST00000363301 96 ntBASIC1.58□□□□□ -2.16
USP39Q53GS9 RNU6-571P-201ENST00000384128 107 ntBASIC1.58□□□□□ -2.16
USP39Q53GS9 MT-TN-201ENST00000387400 73 ntBASIC1.58□□□□□ -2.16
USP39Q53GS9 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.58□□□□□ -2.16
USP39Q53GS9 snoU13.9-201ENST00000458927 103 ntBASIC1.58□□□□□ -2.16
USP39Q53GS9 MIR6516-201ENST00000630554 81 ntBASIC1.58□□□□□ -2.16
USP39Q53GS9 MIR302D-201ENST00000362275 68 ntBASIC1.57□□□□□ -2.16
USP39Q53GS9 Y_RNA.224-201ENST00000364308 111 ntBASIC1.57□□□□□ -2.16
USP39Q53GS9 SNORA31.24-201ENST00000517232 57 ntBASIC1.57□□□□□ -2.16
USP39Q53GS9 MIR4662A-201ENST00000637499 67 ntBASIC1.57□□□□□ -2.16
USP39Q53GS9 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.57□□□□□ -2.16
USP39Q53GS9 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
USP39Q53GS9 RNU6-654P-201ENST00000364373 107 ntBASIC1.56□□□□□ -2.16
USP39Q53GS9 RNU1-78P-201ENST00000391248 165 ntBASIC1.56□□□□□ -2.16
USP39Q53GS9 RNU7-62P-201ENST00000458856 62 ntBASIC1.56□□□□□ -2.16
USP39Q53GS9 RPL30P7-201ENST00000479312 323 ntBASIC1.56□□□□□ -2.16
USP39Q53GS9 AL133373.1-201ENST00000497098 94 ntBASIC1.56□□□□□ -2.16
USP39Q53GS9 SNORA25.13-201ENST00000516395 103 ntBASIC1.56□□□□□ -2.16
USP39Q53GS9 MIR2115-201ENST00000516657 100 ntBASIC1.56□□□□□ -2.16
USP39Q53GS9 MIR6504-201ENST00000613520 61 ntBASIC1.56□□□□□ -2.16
USP39Q53GS9 AL157834.3-201ENST00000615543 103 ntBASIC1.56□□□□□ -2.16
USP39Q53GS9 SNORD36A-201ENST00000362874 73 ntBASIC1.55□□□□□ -2.16
USP39Q53GS9 RNU6-478P-201ENST00000363904 110 ntBASIC1.55□□□□□ -2.16
USP39Q53GS9 RNU6-580P-201ENST00000365159 107 ntBASIC1.55□□□□□ -2.16
USP39Q53GS9 MT-TF-201ENST00000387314 71 ntBASIC1.55□□□□□ -2.16
USP39Q53GS9 MIR889-201ENST00000401280 79 ntBASIC1.55□□□□□ -2.16
USP39Q53GS9 MIR1236-201ENST00000408340 102 ntBASIC1.55□□□□□ -2.16
USP39Q53GS9 MIR1276-201ENST00000408707 83 ntBASIC1.55□□□□□ -2.16
USP39Q53GS9 Y_RNA.648-201ENST00000459455 110 ntBASIC1.55□□□□□ -2.16
USP39Q53GS9 snoU13.18-201ENST00000459483 104 ntBASIC1.55□□□□□ -2.16
USP39Q53GS9 RNU6-947P-201ENST00000516264 106 ntBASIC1.55□□□□□ -2.16
USP39Q53GS9 MIR4421-201ENST00000578133 69 ntBASIC1.55□□□□□ -2.16
USP39Q53GS9 MIR377-201ENST00000362145 69 ntBASIC1.54□□□□□ -2.16
USP39Q53GS9 RNA5SP264-201ENST00000363115 107 ntBASIC1.54□□□□□ -2.16
USP39Q53GS9 RNU4-32P-201ENST00000363404 141 ntBASIC1.54□□□□□ -2.16
USP39Q53GS9 RNU6-624P-201ENST00000363411 107 ntBASIC1.54□□□□□ -2.16
USP39Q53GS9 RNU6-1229P-201ENST00000364295 107 ntBASIC1.54□□□□□ -2.16
USP39Q53GS9 Y_RNA.588-201ENST00000391254 102 ntBASIC1.54□□□□□ -2.16
USP39Q53GS9 RNA5SP95-201ENST00000410319 137 ntBASIC1.54□□□□□ -2.16
USP39Q53GS9 RNU11-2P-201ENST00000516898 142 ntBASIC1.54□□□□□ -2.16
USP39Q53GS9 MIR4491-201ENST00000581087 68 ntBASIC1.54□□□□□ -2.16
USP39Q53GS9 SNORD115-37-201ENST00000363768 82 ntBASIC1.53□□□□□ -2.16
USP39Q53GS9 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
USP39Q53GS9 MIR516A2-201ENST00000384888 90 ntBASIC1.53□□□□□ -2.16
USP39Q53GS9 MIR516A1-201ENST00000385033 90 ntBASIC1.53□□□□□ -2.16
USP39Q53GS9 snoU13.11-201ENST00000459219 104 ntBASIC1.53□□□□□ -2.16
USP39Q53GS9 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.53□□□□□ -2.16
USP39Q53GS9 RNU6-315P-201ENST00000362666 107 ntBASIC1.52□□□□□ -2.17
USP39Q53GS9 AL450471.1-201ENST00000447509 127 ntBASIC1.52□□□□□ -2.17
USP39Q53GS9 RNU7-106P-201ENST00000459514 67 ntBASIC1.52□□□□□ -2.17
USP39Q53GS9 AC023790.1-201ENST00000482174 347 ntBASIC1.52□□□□□ -2.17
USP39Q53GS9 RNU6-75P-201ENST00000515944 104 ntBASIC1.52□□□□□ -2.17
USP39Q53GS9 RNU6-531P-201ENST00000516694 104 ntBASIC1.52□□□□□ -2.17
USP39Q53GS9 SNORA25.16-201ENST00000516741 121 ntBASIC1.52□□□□□ -2.17
USP39Q53GS9 RNU6-165P-201ENST00000517170 99 ntBASIC1.52□□□□□ -2.17
USP39Q53GS9 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.52□□□□□ -2.17
USP39Q53GS9 AL161722.3-201ENST00000605789 2983 ntBASIC1.51□□□□□ -2.17
USP39Q53GS9 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
USP39Q53GS9 MIR103A2-201ENST00000362154 78 ntBASIC1.51□□□□□ -2.17
USP39Q53GS9 AL353770.2-201ENST00000620024 78 ntBASIC1.51□□□□□ -2.17
USP39Q53GS9 SNORD1A-201ENST00000364968 72 ntBASIC1.5□□□□□ -2.17
USP39Q53GS9 SNORA72.6-201ENST00000384520 129 ntBASIC1.5□□□□□ -2.17
USP39Q53GS9 MIR489-201ENST00000384923 84 ntBASIC1.5□□□□□ -2.17
USP39Q53GS9 RNA5SP292-201ENST00000390974 118 ntBASIC1.5□□□□□ -2.17
USP39Q53GS9 RNU6-129P-201ENST00000391022 107 ntBASIC1.5□□□□□ -2.17
USP39Q53GS9 RNU6-1254P-201ENST00000391266 104 ntBASIC1.5□□□□□ -2.17
USP39Q53GS9 MIR1323-201ENST00000408090 73 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 235.3 ms