Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 Y_RNA.270-201ENST00000364693 104 ntBASIC-0.4□□□□□ -2.47
FOXA1P55317 Y_RNA.299-201ENST00000364973 94 ntBASIC-0.4□□□□□ -2.47
FOXA1P55317 Y_RNA.574-201ENST00000384766 95 ntBASIC-0.4□□□□□ -2.47
FOXA1P55317 MIR519A1-201ENST00000385257 85 ntBASIC-0.4□□□□□ -2.47
FOXA1P55317 RNU6-1307P-201ENST00000391012 103 ntBASIC-0.4□□□□□ -2.47
FOXA1P55317 RNA5SP300-201ENST00000391197 107 ntBASIC-0.4□□□□□ -2.47
FOXA1P55317 SNORD63B-201ENST00000411005 70 ntBASIC-0.4□□□□□ -2.47
FOXA1P55317 RNU7-195P-201ENST00000458793 62 ntBASIC-0.4□□□□□ -2.47
FOXA1P55317 AL117351.2-201ENST00000513571 157 ntBASIC-0.4□□□□□ -2.47
FOXA1P55317 Y_RNA.809-201ENST00000516058 95 ntBASIC-0.4□□□□□ -2.47
FOXA1P55317 RNU7-13P-201ENST00000516413 62 ntBASIC-0.4□□□□□ -2.47
FOXA1P55317 IGHVII-40-1-201ENST00000517316 58 ntBASIC-0.4□□□□□ -2.47
FOXA1P55317 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.4□□□□□ -2.47
FOXA1P55317 MIR8064-201ENST00000612863 90 ntBASIC-0.4□□□□□ -2.47
FOXA1P55317 AP001362.1-201ENST00000625165 124 ntBASIC-0.4□□□□□ -2.47
FOXA1P55317 U6.106-201ENST00000636360 105 ntBASIC-0.4□□□□□ -2.47
FOXA1P55317 AL162726.3-218ENST00000636401 95 ntBASIC-0.4□□□□□ -2.47
FOXA1P55317 RNA5SP275-201ENST00000363936 118 ntBASIC-0.41□□□□□ -2.48
FOXA1P55317 SNORD114-15-201ENST00000364687 72 ntBASIC-0.41□□□□□ -2.48
FOXA1P55317 Y_RNA.477-201ENST00000384352 108 ntBASIC-0.41□□□□□ -2.48
FOXA1P55317 Y_RNA.562-201ENST00000384695 113 ntBASIC-0.41□□□□□ -2.48
FOXA1P55317 RNU2-38P-201ENST00000410856 79 ntBASIC-0.41□□□□□ -2.48
FOXA1P55317 RNU7-74P-201ENST00000459104 62 ntBASIC-0.41□□□□□ -2.48
FOXA1P55317 Y_RNA.701-201ENST00000516812 110 ntBASIC-0.41□□□□□ -2.48
FOXA1P55317 MIR4263-201ENST00000584745 83 ntBASIC-0.41□□□□□ -2.48
FOXA1P55317 Y_RNA.75-201ENST00000362927 97 ntBASIC-0.42□□□□□ -2.48
FOXA1P55317 Y_RNA.127-201ENST00000363386 109 ntBASIC-0.42□□□□□ -2.48
FOXA1P55317 RNU1-141P-201ENST00000364623 158 ntBASIC-0.42□□□□□ -2.48
FOXA1P55317 RNU6-818P-201ENST00000364837 108 ntBASIC-0.42□□□□□ -2.48
FOXA1P55317 RNU6-867P-201ENST00000364956 107 ntBASIC-0.42□□□□□ -2.48
FOXA1P55317 SNORD77B-201ENST00000391112 67 ntBASIC-0.42□□□□□ -2.48
FOXA1P55317 Y_RNA.793-201ENST00000411222 111 ntBASIC-0.42□□□□□ -2.48
FOXA1P55317 Y_RNA.626-201ENST00000411288 95 ntBASIC-0.42□□□□□ -2.48
FOXA1P55317 AC096531.1-201ENST00000419107 107 ntBASIC-0.42□□□□□ -2.48
FOXA1P55317 MTATP6P21-201ENST00000440681 189 ntBASIC-0.42□□□□□ -2.48
FOXA1P55317 RNU7-2P-201ENST00000516096 62 ntBASIC-0.42□□□□□ -2.48
FOXA1P55317 MTND5P40-201ENST00000559945 246 ntBASIC-0.42□□□□□ -2.48
FOXA1P55317 AC044792.1-201ENST00000593294 196 ntBASIC-0.42□□□□□ -2.48
FOXA1P55317 AC009779.6-201ENST00000603972 165 ntBASIC-0.42□□□□□ -2.48
FOXA1P55317 RN7SL660P-201ENST00000614852 299 ntBASIC-0.42□□□□□ -2.48
FOXA1P55317 RNU6-170P-201ENST00000362832 104 ntBASIC-0.43□□□□□ -2.48
FOXA1P55317 Y_RNA.328-201ENST00000365208 113 ntBASIC-0.43□□□□□ -2.48
FOXA1P55317 RNU6-524P-201ENST00000384270 107 ntBASIC-0.43□□□□□ -2.48
FOXA1P55317 MIR548H3-201ENST00000408771 118 ntBASIC-0.43□□□□□ -2.48
FOXA1P55317 MTND2P23-201ENST00000422990 651 ntBASIC-0.43□□□□□ -2.48
FOXA1P55317 Y_RNA.720-201ENST00000517166 92 ntBASIC-0.43□□□□□ -2.48
FOXA1P55317 MIR6507-201ENST00000613630 70 ntBASIC-0.43□□□□□ -2.48
FOXA1P55317 RNU6-1260P-201ENST00000362944 107 ntBASIC-0.44□□□□□ -2.48
FOXA1P55317 U8.6-201ENST00000364939 135 ntBASIC-0.44□□□□□ -2.48
FOXA1P55317 Y_RNA.298-201ENST00000364960 107 ntBASIC-0.44□□□□□ -2.48
FOXA1P55317 RNU6-811P-201ENST00000384069 107 ntBASIC-0.44□□□□□ -2.48
FOXA1P55317 Y_RNA.497-201ENST00000384447 98 ntBASIC-0.44□□□□□ -2.48
FOXA1P55317 MIR548F4-201ENST00000408515 105 ntBASIC-0.44□□□□□ -2.48
FOXA1P55317 AC244250.2-201ENST00000418731 148 ntBASIC-0.44□□□□□ -2.48
FOXA1P55317 RPS29P8-201ENST00000445109 171 ntBASIC-0.44□□□□□ -2.48
FOXA1P55317 SNORD127-201ENST00000458892 86 ntBASIC-0.44□□□□□ -2.48
FOXA1P55317 MIR4473-201ENST00000583731 91 ntBASIC-0.44□□□□□ -2.48
FOXA1P55317 MIR3149-201ENST00000584629 83 ntBASIC-0.44□□□□□ -2.48
FOXA1P55317 MIR376B-201ENST00000614515 100 ntBASIC-0.44□□□□□ -2.48
FOXA1P55317 MIR4788-201ENST00000639104 80 ntBASIC-0.44□□□□□ -2.48
FOXA1P55317 MIR655-201ENST00000362159 97 ntBASIC-0.45□□□□□ -2.48
FOXA1P55317 Y_RNA.65-201ENST00000362846 100 ntBASIC-0.45□□□□□ -2.48
FOXA1P55317 SNORD27-201ENST00000363981 72 ntBASIC-0.45□□□□□ -2.48
FOXA1P55317 SNORD14C-201ENST00000365382 88 ntBASIC-0.45□□□□□ -2.48
FOXA1P55317 RNU7-106P-201ENST00000459514 67 ntBASIC-0.45□□□□□ -2.48
FOXA1P55317 RNU7-188P-201ENST00000517063 64 ntBASIC-0.45□□□□□ -2.48
FOXA1P55317 MTRNR2L2-201ENST00000604882 87 ntBASIC-0.45□□□□□ -2.48
FOXA1P55317 RNA5SP205-201ENST00000364653 136 ntBASIC-0.46□□□□□ -2.48
FOXA1P55317 SNORD115-35-201ENST00000365122 82 ntBASIC-0.46□□□□□ -2.48
FOXA1P55317 RNU6-1227P-201ENST00000383981 107 ntBASIC-0.46□□□□□ -2.48
FOXA1P55317 RNU6-571P-201ENST00000384128 107 ntBASIC-0.46□□□□□ -2.48
FOXA1P55317 RNU6-1201P-201ENST00000384227 107 ntBASIC-0.46□□□□□ -2.48
FOXA1P55317 RNU6-616P-201ENST00000384353 107 ntBASIC-0.46□□□□□ -2.48
FOXA1P55317 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.46□□□□□ -2.48
FOXA1P55317 MIR224-201ENST00000384889 81 ntBASIC-0.46□□□□□ -2.48
FOXA1P55317 MIR519E-201ENST00000385075 84 ntBASIC-0.46□□□□□ -2.48
FOXA1P55317 SNORA75.5-201ENST00000391291 81 ntBASIC-0.46□□□□□ -2.48
FOXA1P55317 Y_RNA.651-201ENST00000459380 103 ntBASIC-0.46□□□□□ -2.48
FOXA1P55317 SNORD126-201ENST00000459475 77 ntBASIC-0.46□□□□□ -2.48
FOXA1P55317 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC-0.46□□□□□ -2.48
FOXA1P55317 RNU6-1153P-201ENST00000516760 105 ntBASIC-0.46□□□□□ -2.48
FOXA1P55317 MIR548AG2-201ENST00000581228 64 ntBASIC-0.46□□□□□ -2.48
FOXA1P55317 RNU6-508P-201ENST00000363231 103 ntBASIC-0.47□□□□□ -2.48
FOXA1P55317 Y_RNA.422-201ENST00000384054 114 ntBASIC-0.47□□□□□ -2.48
FOXA1P55317 MIR181B2-201ENST00000385004 89 ntBASIC-0.47□□□□□ -2.48
FOXA1P55317 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.47□□□□□ -2.48
FOXA1P55317 AC107027.2-201ENST00000512197 115 ntBASIC-0.47□□□□□ -2.48
FOXA1P55317 AP001094.1-201ENST00000579805 193 ntBASIC-0.47□□□□□ -2.48
FOXA1P55317 YWHAEP2-201ENST00000580066 112 ntBASIC-0.47□□□□□ -2.48
FOXA1P55317 AC069503.3-201ENST00000618674 145 ntBASIC-0.47□□□□□ -2.48
FOXA1P55317 uc_338.10-201ENST00000621872 182 ntBASIC-0.47□□□□□ -2.48
FOXA1P55317 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC-0.47□□□□□ -2.48
FOXA1P55317 RNU6-797P-201ENST00000363101 109 ntBASIC-0.48□□□□□ -2.49
FOXA1P55317 Y_RNA.288-201ENST00000364854 92 ntBASIC-0.48□□□□□ -2.49
FOXA1P55317 Y_RNA.337-201ENST00000365312 102 ntBASIC-0.48□□□□□ -2.49
FOXA1P55317 RNU6-1104P-201ENST00000384723 104 ntBASIC-0.48□□□□□ -2.49
FOXA1P55317 MIR617-201ENST00000385030 97 ntBASIC-0.48□□□□□ -2.49
FOXA1P55317 SNORD58.1-201ENST00000391313 66 ntBASIC-0.48□□□□□ -2.49
FOXA1P55317 RNU6-588P-201ENST00000410281 105 ntBASIC-0.48□□□□□ -2.49
FOXA1P55317 AC093423.1-201ENST00000440817 142 ntBASIC-0.48□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 173.9 ms