Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 AL158147.1-201ENST00000443970 75 ntBASIC0.44□□□□□ -2.34
PDX1P52945 RNU6-469P-201ENST00000516253 101 ntBASIC0.44□□□□□ -2.34
PDX1P52945 AC087741.2-201ENST00000619415 172 ntBASIC0.44□□□□□ -2.34
PDX1P52945 RNU6-235P-201ENST00000362644 107 ntBASIC0.43□□□□□ -2.34
PDX1P52945 Y_RNA.174-201ENST00000363781 105 ntBASIC0.43□□□□□ -2.34
PDX1P52945 RNY1P5-201ENST00000383890 115 ntBASIC0.43□□□□□ -2.34
PDX1P52945 AC114737.2-201ENST00000421583 173 ntBASIC0.43□□□□□ -2.34
PDX1P52945 RNU7-48P-201ENST00000458875 63 ntBASIC0.43□□□□□ -2.34
PDX1P52945 RNU7-2P-201ENST00000516096 62 ntBASIC0.43□□□□□ -2.34
PDX1P52945 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.43□□□□□ -2.34
PDX1P52945 Y_RNA.568-201ENST00000384742 113 ntBASIC0.42□□□□□ -2.34
PDX1P52945 RNU6-257P-201ENST00000410238 98 ntBASIC0.42□□□□□ -2.34
PDX1P52945 RNU7-6P-201ENST00000516845 62 ntBASIC0.42□□□□□ -2.34
PDX1P52945 Y_RNA.773-201ENST00000607168 90 ntBASIC0.42□□□□□ -2.34
PDX1P52945 MIR2909-201ENST00000617113 69 ntBASIC0.42□□□□□ -2.34
PDX1P52945 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.41□□□□□ -2.34
PDX1P52945 MIRLET7D-201ENST00000362263 87 ntBASIC0.41□□□□□ -2.34
PDX1P52945 SNORA50A-201ENST00000384225 134 ntBASIC0.41□□□□□ -2.34
PDX1P52945 MIR518A1-201ENST00000385068 85 ntBASIC0.41□□□□□ -2.34
PDX1P52945 MIR1197-201ENST00000408818 88 ntBASIC0.41□□□□□ -2.34
PDX1P52945 SNORA40.8-201ENST00000411034 126 ntBASIC0.41□□□□□ -2.34
PDX1P52945 MIR101-2-201ENST00000362195 79 ntBASIC0.4□□□□□ -2.35
PDX1P52945 SNORD115-19-201ENST00000363098 82 ntBASIC0.4□□□□□ -2.35
PDX1P52945 SNORD115-18-201ENST00000363293 82 ntBASIC0.4□□□□□ -2.35
PDX1P52945 SNORD115-17-201ENST00000364612 82 ntBASIC0.4□□□□□ -2.35
PDX1P52945 SUMO1P3-201ENST00000439961 304 ntBASIC0.4□□□□□ -2.35
PDX1P52945 MIR3163-201ENST00000581592 73 ntBASIC0.4□□□□□ -2.35
PDX1P52945 MIR376B-201ENST00000614515 100 ntBASIC0.4□□□□□ -2.35
PDX1P52945 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.4□□□□□ -2.35
PDX1P52945 MIR1255B1-201ENST00000636325 63 ntBASIC0.4□□□□□ -2.35
PDX1P52945 Y_RNA.198-201ENST00000364013 98 ntBASIC0.39□□□□□ -2.35
PDX1P52945 Y_RNA.213-201ENST00000364178 111 ntBASIC0.39□□□□□ -2.35
PDX1P52945 SNORD115-35-201ENST00000365122 82 ntBASIC0.39□□□□□ -2.35
PDX1P52945 SNORD58C-201ENST00000365223 64 ntBASIC0.39□□□□□ -2.35
PDX1P52945 Y_RNA.343-201ENST00000365354 112 ntBASIC0.39□□□□□ -2.35
PDX1P52945 MIRLET7F2-201ENST00000385277 83 ntBASIC0.39□□□□□ -2.35
PDX1P52945 SNORA40-201ENST00000388090 126 ntBASIC0.39□□□□□ -2.35
PDX1P52945 RNA5SP136-201ENST00000410906 107 ntBASIC0.39□□□□□ -2.35
PDX1P52945 SNORD71-201ENST00000411292 86 ntBASIC0.39□□□□□ -2.35
PDX1P52945 RNU6-1234P-201ENST00000516877 103 ntBASIC0.39□□□□□ -2.35
PDX1P52945 RNA5SP47-201ENST00000517230 109 ntBASIC0.39□□□□□ -2.35
PDX1P52945 MIR7107-201ENST00000611489 80 ntBASIC0.39□□□□□ -2.35
PDX1P52945 AP001362.1-201ENST00000625165 124 ntBASIC0.39□□□□□ -2.35
PDX1P52945 MIR103A1-201ENST00000362165 78 ntBASIC0.38□□□□□ -2.35
PDX1P52945 RNA5SP257-201ENST00000363023 116 ntBASIC0.38□□□□□ -2.35
PDX1P52945 Y_RNA.127-201ENST00000363386 109 ntBASIC0.38□□□□□ -2.35
PDX1P52945 SNORD118-201ENST00000363593 134 ntBASIC0.38□□□□□ -2.35
PDX1P52945 RNU6-865P-201ENST00000364772 107 ntBASIC0.38□□□□□ -2.35
PDX1P52945 Y_RNA.328-201ENST00000365208 113 ntBASIC0.38□□□□□ -2.35
PDX1P52945 Y_RNA.528-201ENST00000384575 108 ntBASIC0.38□□□□□ -2.35
PDX1P52945 RNU6-429P-201ENST00000384582 108 ntBASIC0.38□□□□□ -2.35
PDX1P52945 SNORD28-201ENST00000384706 75 ntBASIC0.38□□□□□ -2.35
PDX1P52945 RNA5SP268-201ENST00000516828 124 ntBASIC0.38□□□□□ -2.35
PDX1P52945 SCARNA16.5-201ENST00000517114 183 ntBASIC0.38□□□□□ -2.35
PDX1P52945 TUG1_4.1-201ENST00000619464 181 ntBASIC0.38□□□□□ -2.35
PDX1P52945 MIR34C-201ENST00000384831 77 ntBASIC0.37□□□□□ -2.35
PDX1P52945 BX276092.1-201ENST00000427368 251 ntBASIC0.37□□□□□ -2.35
PDX1P52945 RNU6-772P-201ENST00000516042 105 ntBASIC0.37□□□□□ -2.35
PDX1P52945 RNU6-1061P-201ENST00000516530 99 ntBASIC0.37□□□□□ -2.35
PDX1P52945 RNU6-135P-201ENST00000516769 101 ntBASIC0.37□□□□□ -2.35
PDX1P52945 MIR4500-201ENST00000579472 76 ntBASIC0.37□□□□□ -2.35
PDX1P52945 MIR4639-201ENST00000584938 69 ntBASIC0.37□□□□□ -2.35
PDX1P52945 AC244669.1-204ENST00000621564 178 ntBASIC0.37□□□□□ -2.35
PDX1P52945 MIR6828-201ENST00000636181 60 ntBASIC0.37□□□□□ -2.35
PDX1P52945 Y_RNA.56-201ENST00000362798 112 ntBASIC0.36□□□□□ -2.35
PDX1P52945 Y_RNA.85-201ENST00000363014 111 ntBASIC0.36□□□□□ -2.35
PDX1P52945 Y_RNA.98-201ENST00000363109 102 ntBASIC0.36□□□□□ -2.35
PDX1P52945 RNU6-1229P-201ENST00000364295 107 ntBASIC0.36□□□□□ -2.35
PDX1P52945 Y_RNA.525-201ENST00000384570 113 ntBASIC0.36□□□□□ -2.35
PDX1P52945 Y_RNA.630-201ENST00000411370 108 ntBASIC0.36□□□□□ -2.35
PDX1P52945 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.36□□□□□ -2.35
PDX1P52945 MIR4514-201ENST00000581410 57 ntBASIC0.36□□□□□ -2.35
PDX1P52945 SNORD44.1-201ENST00000363202 61 ntBASIC0.35□□□□□ -2.35
PDX1P52945 RNU6-774P-201ENST00000363238 107 ntBASIC0.35□□□□□ -2.35
PDX1P52945 MIR548D2-201ENST00000384955 97 ntBASIC0.35□□□□□ -2.35
PDX1P52945 Y_RNA.586-201ENST00000391146 98 ntBASIC0.35□□□□□ -2.35
PDX1P52945 AC244505.6-201ENST00000452829 130 ntBASIC0.35□□□□□ -2.35
PDX1P52945 RNU6-521P-201ENST00000516663 105 ntBASIC0.35□□□□□ -2.35
PDX1P52945 RNU6-971P-201ENST00000516920 106 ntBASIC0.35□□□□□ -2.35
PDX1P52945 MIR3133-201ENST00000583157 78 ntBASIC0.35□□□□□ -2.35
PDX1P52945 AC025166.1-201ENST00000612411 163 ntBASIC0.35□□□□□ -2.35
PDX1P52945 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.35□□□□□ -2.35
PDX1P52945 Y_RNA.344-201ENST00000365381 112 ntBASIC0.34□□□□□ -2.36
PDX1P52945 RNU7-107P-201ENST00000459121 61 ntBASIC0.34□□□□□ -2.36
PDX1P52945 RNU6-1211P-201ENST00000459179 105 ntBASIC0.34□□□□□ -2.36
PDX1P52945 TRAJ51-201ENST00000504127 63 ntBASIC0.34□□□□□ -2.36
PDX1P52945 RNA5SP227-201ENST00000516184 113 ntBASIC0.34□□□□□ -2.36
PDX1P52945 AC023932.2-201ENST00000603176 175 ntBASIC0.34□□□□□ -2.36
PDX1P52945 SNORD115-24-201ENST00000363528 82 ntBASIC0.33□□□□□ -2.36
PDX1P52945 SNRPGP12-201ENST00000449481 213 ntBASIC0.33□□□□□ -2.36
PDX1P52945 Y_RNA.703-201ENST00000516846 111 ntBASIC0.33□□□□□ -2.36
PDX1P52945 MIR548H5-201ENST00000580314 60 ntBASIC0.33□□□□□ -2.36
PDX1P52945 MTND5P18-201ENST00000445624 1801 ntBASIC0.33□□□□□ -2.36
PDX1P52945 Y_RNA.49-201ENST00000362714 112 ntBASIC0.32□□□□□ -2.36
PDX1P52945 Y_RNA.360-201ENST00000365512 102 ntBASIC0.32□□□□□ -2.36
PDX1P52945 AL353813.1-201ENST00000440700 253 ntBASIC0.32□□□□□ -2.36
PDX1P52945 Y_RNA.681-201ENST00000516445 113 ntBASIC0.32□□□□□ -2.36
PDX1P52945 RNU7-161P-201ENST00000517289 62 ntBASIC0.32□□□□□ -2.36
PDX1P52945 AC138869.1-201ENST00000568623 124 ntBASIC0.32□□□□□ -2.36
PDX1P52945 RNU6-187P-201ENST00000384139 106 ntBASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 176 ms