Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC0.97□□□□□ -2.25
PDLIM4P50479 MIR125B2-201ENST00000385128 89 ntBASIC0.96□□□□□ -2.26
PDLIM4P50479 RNA5SP89-201ENST00000410300 108 ntBASIC0.96□□□□□ -2.26
PDLIM4P50479 SNORA19.1-201ENST00000410656 129 ntBASIC0.96□□□□□ -2.26
PDLIM4P50479 Y_RNA.694-201ENST00000516677 117 ntBASIC0.96□□□□□ -2.26
PDLIM4P50479 MIR96-201ENST00000362288 78 ntBASIC0.95□□□□□ -2.26
PDLIM4P50479 Y_RNA.95-201ENST00000363079 95 ntBASIC0.95□□□□□ -2.26
PDLIM4P50479 Y_RNA.96-201ENST00000363092 109 ntBASIC0.95□□□□□ -2.26
PDLIM4P50479 SNORD114-27-201ENST00000363766 70 ntBASIC0.95□□□□□ -2.26
PDLIM4P50479 Y_RNA.173-201ENST00000363776 113 ntBASIC0.95□□□□□ -2.26
PDLIM4P50479 Y_RNA.247-201ENST00000364500 92 ntBASIC0.95□□□□□ -2.26
PDLIM4P50479 MIR1257-201ENST00000408490 117 ntBASIC0.95□□□□□ -2.26
PDLIM4P50479 MIR1827-201ENST00000408549 66 ntBASIC0.95□□□□□ -2.26
PDLIM4P50479 SNORD93-201ENST00000408813 74 ntBASIC0.95□□□□□ -2.26
PDLIM4P50479 RNU6-994P-201ENST00000410507 111 ntBASIC0.95□□□□□ -2.26
PDLIM4P50479 AC004941.2-201ENST00000427009 228 ntBASIC0.95□□□□□ -2.26
PDLIM4P50479 MTATP8P2-201ENST00000435212 202 ntBASIC0.95□□□□□ -2.26
PDLIM4P50479 SNORA40.13-201ENST00000516379 120 ntBASIC0.95□□□□□ -2.26
PDLIM4P50479 RNU7-40P-201ENST00000516397 64 ntBASIC0.95□□□□□ -2.26
PDLIM4P50479 SNORD92-201ENST00000585078 85 ntBASIC0.95□□□□□ -2.26
PDLIM4P50479 AC020891.4-201ENST00000605745 93 ntBASIC0.95□□□□□ -2.26
PDLIM4P50479 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.95□□□□□ -2.26
PDLIM4P50479 AC023934.1-201ENST00000574529 2389 ntBASIC0.94□□□□□ -2.26
PDLIM4P50479 RNU6-170P-201ENST00000362832 104 ntBASIC0.94□□□□□ -2.26
PDLIM4P50479 RNU4-58P-201ENST00000363192 141 ntBASIC0.94□□□□□ -2.26
PDLIM4P50479 Y_RNA.119-201ENST00000363301 96 ntBASIC0.94□□□□□ -2.26
PDLIM4P50479 RNA5SP133-201ENST00000363368 119 ntBASIC0.94□□□□□ -2.26
PDLIM4P50479 MIR200A-201ENST00000384875 90 ntBASIC0.94□□□□□ -2.26
PDLIM4P50479 MIR548G-201ENST00000408442 89 ntBASIC0.94□□□□□ -2.26
PDLIM4P50479 SNORD83.1-201ENST00000411362 77 ntBASIC0.94□□□□□ -2.26
PDLIM4P50479 SNRPGP12-201ENST00000449481 213 ntBASIC0.94□□□□□ -2.26
PDLIM4P50479 MIR4676-201ENST00000583078 72 ntBASIC0.94□□□□□ -2.26
PDLIM4P50479 RNU6-90P-201ENST00000606352 106 ntBASIC0.94□□□□□ -2.26
PDLIM4P50479 MIR6082-201ENST00000613604 109 ntBASIC0.94□□□□□ -2.26
PDLIM4P50479 MIR8066-201ENST00000617280 78 ntBASIC0.94□□□□□ -2.26
PDLIM4P50479 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.94□□□□□ -2.26
PDLIM4P50479 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.93□□□□□ -2.26
PDLIM4P50479 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
PDLIM4P50479 Y_RNA.42-201ENST00000362660 108 ntBASIC0.93□□□□□ -2.26
PDLIM4P50479 Y_RNA.107-201ENST00000363190 121 ntBASIC0.93□□□□□ -2.26
PDLIM4P50479 RNU6-1163P-201ENST00000364516 107 ntBASIC0.93□□□□□ -2.26
PDLIM4P50479 RNU6-571P-201ENST00000384128 107 ntBASIC0.93□□□□□ -2.26
PDLIM4P50479 RNU6-905P-201ENST00000384434 107 ntBASIC0.93□□□□□ -2.26
PDLIM4P50479 FABP5P4-201ENST00000437203 171 ntBASIC0.93□□□□□ -2.26
PDLIM4P50479 AC067940.1-201ENST00000458411 300 ntBASIC0.93□□□□□ -2.26
PDLIM4P50479 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.93□□□□□ -2.26
PDLIM4P50479 Y_RNA.677-201ENST00000516401 85 ntBASIC0.93□□□□□ -2.26
PDLIM4P50479 RNU6-1110P-201ENST00000516462 101 ntBASIC0.93□□□□□ -2.26
PDLIM4P50479 MIR4771-2-201ENST00000577758 74 ntBASIC0.93□□□□□ -2.26
PDLIM4P50479 MIR4771-1-201ENST00000582617 74 ntBASIC0.93□□□□□ -2.26
PDLIM4P50479 MIR4777-201ENST00000583710 86 ntBASIC0.93□□□□□ -2.26
PDLIM4P50479 AC103810.9-201ENST00000606688 112 ntBASIC0.93□□□□□ -2.26
PDLIM4P50479 U6.109-201ENST00000636749 87 ntBASIC0.93□□□□□ -2.26
PDLIM4P50479 RNU6-640P-201ENST00000363693 105 ntBASIC0.92□□□□□ -2.26
PDLIM4P50479 RNU1-93P-201ENST00000364704 169 ntBASIC0.92□□□□□ -2.26
PDLIM4P50479 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
PDLIM4P50479 MIR938-201ENST00000401216 83 ntBASIC0.92□□□□□ -2.26
PDLIM4P50479 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.92□□□□□ -2.26
PDLIM4P50479 RNU4-83P-201ENST00000410863 133 ntBASIC0.92□□□□□ -2.26
PDLIM4P50479 RNU7-56P-201ENST00000458744 62 ntBASIC0.92□□□□□ -2.26
PDLIM4P50479 U7.7-201ENST00000459276 60 ntBASIC0.92□□□□□ -2.26
PDLIM4P50479 RNU6-109P-201ENST00000516364 107 ntBASIC0.92□□□□□ -2.26
PDLIM4P50479 RNU6-184P-201ENST00000516514 107 ntBASIC0.92□□□□□ -2.26
PDLIM4P50479 RNA5SP404-201ENST00000517118 132 ntBASIC0.92□□□□□ -2.26
PDLIM4P50479 MIR4804-201ENST00000581683 73 ntBASIC0.92□□□□□ -2.26
PDLIM4P50479 AC012531.4-201ENST00000616509 177 ntBASIC0.92□□□□□ -2.26
PDLIM4P50479 MIR1-1-201ENST00000362147 71 ntBASIC0.91□□□□□ -2.26
PDLIM4P50479 AP003327.1-201ENST00000529684 127 ntBASIC0.91□□□□□ -2.26
PDLIM4P50479 AC090897.1-201ENST00000580909 226 ntBASIC0.91□□□□□ -2.26
PDLIM4P50479 AL136317.1-201ENST00000612653 226 ntBASIC0.91□□□□□ -2.26
PDLIM4P50479 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
PDLIM4P50479 RNU6-1298P-201ENST00000362456 101 ntBASIC0.9□□□□□ -2.27
PDLIM4P50479 RNU6-1244P-201ENST00000363614 108 ntBASIC0.9□□□□□ -2.27
PDLIM4P50479 Y_RNA.567-201ENST00000384736 106 ntBASIC0.9□□□□□ -2.27
PDLIM4P50479 MIR520E-201ENST00000384867 87 ntBASIC0.9□□□□□ -2.27
PDLIM4P50479 AC109327.2-201ENST00000448339 378 ntBASIC0.9□□□□□ -2.27
PDLIM4P50479 Y_RNA.659-201ENST00000515994 113 ntBASIC0.9□□□□□ -2.27
PDLIM4P50479 RNU6-531P-201ENST00000516694 104 ntBASIC0.9□□□□□ -2.27
PDLIM4P50479 SNORA25.16-201ENST00000516741 121 ntBASIC0.9□□□□□ -2.27
PDLIM4P50479 RNU7-156P-201ENST00000517214 74 ntBASIC0.9□□□□□ -2.27
PDLIM4P50479 MIR4500-201ENST00000579472 76 ntBASIC0.9□□□□□ -2.27
PDLIM4P50479 RMST_2.1-201ENST00000617263 136 ntBASIC0.9□□□□□ -2.27
PDLIM4P50479 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.9□□□□□ -2.27
PDLIM4P50479 AC091304.10-201ENST00000641554 121 ntBASIC0.9□□□□□ -2.27
PDLIM4P50479 Y_RNA.13-201ENST00000362403 112 ntBASIC0.89□□□□□ -2.27
PDLIM4P50479 Y_RNA.56-201ENST00000362798 112 ntBASIC0.89□□□□□ -2.27
PDLIM4P50479 RNU6-813P-201ENST00000384691 107 ntBASIC0.89□□□□□ -2.27
PDLIM4P50479 MIR519A1-201ENST00000385257 85 ntBASIC0.89□□□□□ -2.27
PDLIM4P50479 RNU6-972P-201ENST00000391208 107 ntBASIC0.89□□□□□ -2.27
PDLIM4P50479 RPS29P1-201ENST00000465274 159 ntBASIC0.89□□□□□ -2.27
PDLIM4P50479 Y_RNA.705-201ENST00000516862 110 ntBASIC0.89□□□□□ -2.27
PDLIM4P50479 MTND5P40-201ENST00000559945 246 ntBASIC0.89□□□□□ -2.27
PDLIM4P50479 RNU7-10P-201ENST00000607194 63 ntBASIC0.89□□□□□ -2.27
PDLIM4P50479 RNU6-403P-201ENST00000363163 104 ntBASIC0.88□□□□□ -2.27
PDLIM4P50479 RNU6-1187P-201ENST00000364771 110 ntBASIC0.88□□□□□ -2.27
PDLIM4P50479 SNORD114-24-201ENST00000365029 72 ntBASIC0.88□□□□□ -2.27
PDLIM4P50479 MIR100-201ENST00000385259 80 ntBASIC0.88□□□□□ -2.27
PDLIM4P50479 MIR942-201ENST00000401111 86 ntBASIC0.88□□□□□ -2.27
PDLIM4P50479 SPINT5P-201ENST00000448174 155 ntBASIC0.88□□□□□ -2.27
PDLIM4P50479 RNU6-795P-201ENST00000516323 103 ntBASIC0.88□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 193.1 ms