Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 Y_RNA.337-201ENST00000365312 102 ntBASIC-0.36□□□□□ -2.47
RFX3P48380 Y_RNA.435-201ENST00000384095 112 ntBASIC-0.36□□□□□ -2.47
RFX3P48380 Y_RNA.478-201ENST00000384358 107 ntBASIC-0.36□□□□□ -2.47
RFX3P48380 RNU6-768P-201ENST00000384683 107 ntBASIC-0.36□□□□□ -2.47
RFX3P48380 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC-0.36□□□□□ -2.47
RFX3P48380 AC107027.2-201ENST00000512197 115 ntBASIC-0.36□□□□□ -2.47
RFX3P48380 RNU6-240P-201ENST00000516098 97 ntBASIC-0.36□□□□□ -2.47
RFX3P48380 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-0.36□□□□□ -2.47
RFX3P48380 MIR3149-201ENST00000584629 83 ntBASIC-0.36□□□□□ -2.47
RFX3P48380 AP001180.6-201ENST00000584918 159 ntBASIC-0.36□□□□□ -2.47
RFX3P48380 AP001362.1-201ENST00000625165 124 ntBASIC-0.36□□□□□ -2.47
RFX3P48380 Y_RNA.47-201ENST00000362697 108 ntBASIC-0.37□□□□□ -2.47
RFX3P48380 RNU6-1082P-201ENST00000364574 107 ntBASIC-0.37□□□□□ -2.47
RFX3P48380 MIR206-201ENST00000384872 86 ntBASIC-0.37□□□□□ -2.47
RFX3P48380 RNU6-1307P-201ENST00000391012 103 ntBASIC-0.37□□□□□ -2.47
RFX3P48380 MIR876-201ENST00000401147 81 ntBASIC-0.37□□□□□ -2.47
RFX3P48380 MTND2P23-201ENST00000422990 651 ntBASIC-0.37□□□□□ -2.47
RFX3P48380 AC109327.2-201ENST00000448339 378 ntBASIC-0.37□□□□□ -2.47
RFX3P48380 RNU4-71P-201ENST00000516258 113 ntBASIC-0.37□□□□□ -2.47
RFX3P48380 RNU6-320P-201ENST00000516511 106 ntBASIC-0.37□□□□□ -2.47
RFX3P48380 MIR3646-201ENST00000578301 84 ntBASIC-0.37□□□□□ -2.47
RFX3P48380 MIR8064-201ENST00000612863 90 ntBASIC-0.37□□□□□ -2.47
RFX3P48380 Y_RNA.65-201ENST00000362846 100 ntBASIC-0.38□□□□□ -2.47
RFX3P48380 SNORD114-28-201ENST00000363610 72 ntBASIC-0.38□□□□□ -2.47
RFX3P48380 SNORD27-201ENST00000363981 72 ntBASIC-0.38□□□□□ -2.47
RFX3P48380 RNU6-312P-201ENST00000364629 107 ntBASIC-0.38□□□□□ -2.47
RFX3P48380 Y_RNA.323-201ENST00000365157 109 ntBASIC-0.38□□□□□ -2.47
RFX3P48380 Y_RNA.448-201ENST00000384185 108 ntBASIC-0.38□□□□□ -2.47
RFX3P48380 Y_RNA.477-201ENST00000384352 108 ntBASIC-0.38□□□□□ -2.47
RFX3P48380 RNU7-123P-201ENST00000515911 60 ntBASIC-0.38□□□□□ -2.47
RFX3P48380 RNA5SP476-201ENST00000516613 103 ntBASIC-0.38□□□□□ -2.47
RFX3P48380 AC084368.1-201ENST00000620935 65 ntBASIC-0.38□□□□□ -2.47
RFX3P48380 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.38□□□□□ -2.47
RFX3P48380 SNORD49B-201ENST00000365172 72 ntBASIC-0.39□□□□□ -2.47
RFX3P48380 MIR516B1-201ENST00000385211 90 ntBASIC-0.39□□□□□ -2.47
RFX3P48380 Y_RNA.604-201ENST00000410574 102 ntBASIC-0.39□□□□□ -2.47
RFX3P48380 AC244250.2-201ENST00000418731 148 ntBASIC-0.39□□□□□ -2.47
RFX3P48380 RNU6-758P-201ENST00000516292 89 ntBASIC-0.39□□□□□ -2.47
RFX3P48380 SNORA25.13-201ENST00000516395 103 ntBASIC-0.39□□□□□ -2.47
RFX3P48380 RNU6-1153P-201ENST00000516760 105 ntBASIC-0.39□□□□□ -2.47
RFX3P48380 MIR3666-201ENST00000607845 111 ntBASIC-0.39□□□□□ -2.47
RFX3P48380 RN7SL660P-201ENST00000614852 299 ntBASIC-0.39□□□□□ -2.47
RFX3P48380 Y_RNA.127-201ENST00000363386 109 ntBASIC-0.4□□□□□ -2.47
RFX3P48380 Y_RNA.298-201ENST00000364960 107 ntBASIC-0.4□□□□□ -2.47
RFX3P48380 Y_RNA.326-201ENST00000365176 113 ntBASIC-0.4□□□□□ -2.47
RFX3P48380 SNORD18B-201ENST00000365659 72 ntBASIC-0.4□□□□□ -2.47
RFX3P48380 Y_RNA.497-201ENST00000384447 98 ntBASIC-0.4□□□□□ -2.47
RFX3P48380 MIR606-201ENST00000384851 96 ntBASIC-0.4□□□□□ -2.47
RFX3P48380 Y_RNA.793-201ENST00000411222 111 ntBASIC-0.4□□□□□ -2.47
RFX3P48380 Y_RNA.809-201ENST00000516058 95 ntBASIC-0.4□□□□□ -2.47
RFX3P48380 RNU7-2P-201ENST00000516096 62 ntBASIC-0.4□□□□□ -2.47
RFX3P48380 RNU7-13P-201ENST00000516413 62 ntBASIC-0.4□□□□□ -2.47
RFX3P48380 MIR3920-201ENST00000581751 86 ntBASIC-0.4□□□□□ -2.47
RFX3P48380 MIR4473-201ENST00000583731 91 ntBASIC-0.4□□□□□ -2.47
RFX3P48380 MIR4493-201ENST00000584016 73 ntBASIC-0.4□□□□□ -2.47
RFX3P48380 AC008737.2-201ENST00000599446 118 ntBASIC-0.4□□□□□ -2.47
RFX3P48380 MIR6844-201ENST00000637122 62 ntBASIC-0.4□□□□□ -2.47
RFX3P48380 RNU6-170P-201ENST00000362832 104 ntBASIC-0.41□□□□□ -2.48
RFX3P48380 RNU6-1260P-201ENST00000362944 107 ntBASIC-0.41□□□□□ -2.48
RFX3P48380 RNA5SP275-201ENST00000363936 118 ntBASIC-0.41□□□□□ -2.48
RFX3P48380 Y_RNA.328-201ENST00000365208 113 ntBASIC-0.41□□□□□ -2.48
RFX3P48380 RNU6-918P-201ENST00000391219 106 ntBASIC-0.41□□□□□ -2.48
RFX3P48380 RNA5SP25-201ENST00000410815 110 ntBASIC-0.41□□□□□ -2.48
RFX3P48380 RNU7-195P-201ENST00000458793 62 ntBASIC-0.41□□□□□ -2.48
RFX3P48380 MIR6507-201ENST00000613630 70 ntBASIC-0.41□□□□□ -2.48
RFX3P48380 SNORD114-11-201ENST00000363738 75 ntBASIC-0.42□□□□□ -2.48
RFX3P48380 Y_RNA.270-201ENST00000364693 104 ntBASIC-0.42□□□□□ -2.48
RFX3P48380 U8.6-201ENST00000364939 135 ntBASIC-0.42□□□□□ -2.48
RFX3P48380 RNU6-571P-201ENST00000384128 107 ntBASIC-0.42□□□□□ -2.48
RFX3P48380 SNORD63B-201ENST00000411005 70 ntBASIC-0.42□□□□□ -2.48
RFX3P48380 AC096531.1-201ENST00000419107 107 ntBASIC-0.42□□□□□ -2.48
RFX3P48380 MIR655-201ENST00000362159 97 ntBASIC-0.43□□□□□ -2.48
RFX3P48380 SNORD115-35-201ENST00000365122 82 ntBASIC-0.43□□□□□ -2.48
RFX3P48380 Y_RNA.350-201ENST00000365409 98 ntBASIC-0.43□□□□□ -2.48
RFX3P48380 RNU6-811P-201ENST00000384069 107 ntBASIC-0.43□□□□□ -2.48
RFX3P48380 RNU6-1201P-201ENST00000384227 107 ntBASIC-0.43□□□□□ -2.48
RFX3P48380 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.43□□□□□ -2.48
RFX3P48380 MIR604-201ENST00000384880 94 ntBASIC-0.43□□□□□ -2.48
RFX3P48380 RNA5SP300-201ENST00000391197 107 ntBASIC-0.43□□□□□ -2.48
RFX3P48380 MIR1302-3-201ENST00000408128 138 ntBASIC-0.43□□□□□ -2.48
RFX3P48380 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-0.43□□□□□ -2.48
RFX3P48380 MTND5P40-201ENST00000559945 246 ntBASIC-0.43□□□□□ -2.48
RFX3P48380 MIR548AG2-201ENST00000581228 64 ntBASIC-0.43□□□□□ -2.48
RFX3P48380 Y_RNA.812-201ENST00000610788 101 ntBASIC-0.43□□□□□ -2.48
RFX3P48380 Y_RNA.784-201ENST00000613803 101 ntBASIC-0.43□□□□□ -2.48
RFX3P48380 Y_RNA.787-201ENST00000616522 101 ntBASIC-0.43□□□□□ -2.48
RFX3P48380 Y_RNA.780-201ENST00000617336 101 ntBASIC-0.43□□□□□ -2.48
RFX3P48380 Y_RNA.801-201ENST00000619005 101 ntBASIC-0.43□□□□□ -2.48
RFX3P48380 MIR4788-201ENST00000639104 80 ntBASIC-0.43□□□□□ -2.48
RFX3P48380 MIR101-1-201ENST00000362265 75 ntBASIC-0.44□□□□□ -2.48
RFX3P48380 SNORA63-201ENST00000363450 132 ntBASIC-0.44□□□□□ -2.48
RFX3P48380 RNA5SP205-201ENST00000364653 136 ntBASIC-0.44□□□□□ -2.48
RFX3P48380 Y_RNA.668-201ENST00000516233 93 ntBASIC-0.44□□□□□ -2.48
RFX3P48380 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.44□□□□□ -2.48
RFX3P48380 RNU7-188P-201ENST00000517063 64 ntBASIC-0.44□□□□□ -2.48
RFX3P48380 MIR4263-201ENST00000584745 83 ntBASIC-0.44□□□□□ -2.48
RFX3P48380 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC-0.45□□□□□ -2.48
RFX3P48380 RNU6-508P-201ENST00000363231 103 ntBASIC-0.45□□□□□ -2.48
RFX3P48380 SNORD115-44-201ENST00000365391 82 ntBASIC-0.45□□□□□ -2.48
RFX3P48380 AL603914.1-201ENST00000401964 204 ntBASIC-0.45□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms